Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G35340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042820: vitamin B6 catabolic process0.00E+00
2GO:0090042: tubulin deacetylation0.00E+00
3GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
4GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0042821: pyridoxal biosynthetic process0.00E+00
8GO:0005996: monosaccharide metabolic process0.00E+00
9GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
10GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
11GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
12GO:0015979: photosynthesis4.21E-15
13GO:0009658: chloroplast organization6.26E-11
14GO:0009773: photosynthetic electron transport in photosystem I2.06E-10
15GO:0032544: plastid translation2.61E-07
16GO:0019464: glycine decarboxylation via glycine cleavage system6.93E-07
17GO:0009853: photorespiration1.10E-06
18GO:0010027: thylakoid membrane organization5.73E-06
19GO:0030388: fructose 1,6-bisphosphate metabolic process5.84E-06
20GO:1902326: positive regulation of chlorophyll biosynthetic process5.84E-06
21GO:0010196: nonphotochemical quenching8.28E-06
22GO:0018298: protein-chromophore linkage1.13E-05
23GO:0031022: nuclear migration along microfilament2.05E-05
24GO:0006000: fructose metabolic process2.05E-05
25GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.51E-05
26GO:0006810: transport6.51E-05
27GO:0009765: photosynthesis, light harvesting8.00E-05
28GO:0045727: positive regulation of translation8.00E-05
29GO:0006546: glycine catabolic process8.00E-05
30GO:0006094: gluconeogenesis8.21E-05
31GO:0019253: reductive pentose-phosphate cycle9.92E-05
32GO:0010207: photosystem II assembly9.92E-05
33GO:0009735: response to cytokinin1.17E-04
34GO:0009904: chloroplast accumulation movement1.25E-04
35GO:0016123: xanthophyll biosynthetic process1.25E-04
36GO:0010190: cytochrome b6f complex assembly1.80E-04
37GO:0061077: chaperone-mediated protein folding2.13E-04
38GO:0009903: chloroplast avoidance movement2.44E-04
39GO:0009854: oxidative photosynthetic carbon pathway2.44E-04
40GO:0016117: carotenoid biosynthetic process3.42E-04
41GO:0071277: cellular response to calcium ion3.60E-04
42GO:0000481: maturation of 5S rRNA3.60E-04
43GO:1902458: positive regulation of stomatal opening3.60E-04
44GO:0034337: RNA folding3.60E-04
45GO:0051180: vitamin transport3.60E-04
46GO:0009443: pyridoxal 5'-phosphate salvage3.60E-04
47GO:0030974: thiamine pyrophosphate transport3.60E-04
48GO:0009704: de-etiolation3.97E-04
49GO:0006002: fructose 6-phosphate metabolic process4.86E-04
50GO:0071482: cellular response to light stimulus4.86E-04
51GO:0015893: drug transport7.83E-04
52GO:0034755: iron ion transmembrane transport7.83E-04
53GO:0097054: L-glutamate biosynthetic process7.83E-04
54GO:1903426: regulation of reactive oxygen species biosynthetic process7.83E-04
55GO:0080005: photosystem stoichiometry adjustment7.83E-04
56GO:0018119: peptidyl-cysteine S-nitrosylation9.22E-04
57GO:0009767: photosynthetic electron transport chain1.19E-03
58GO:0005986: sucrose biosynthetic process1.19E-03
59GO:0071492: cellular response to UV-A1.27E-03
60GO:0006696: ergosterol biosynthetic process1.27E-03
61GO:0000913: preprophase band assembly1.27E-03
62GO:0006954: inflammatory response1.27E-03
63GO:0006518: peptide metabolic process1.27E-03
64GO:0010020: chloroplast fission1.34E-03
65GO:0006636: unsaturated fatty acid biosynthetic process1.67E-03
66GO:0043572: plastid fission1.83E-03
67GO:0046836: glycolipid transport1.83E-03
68GO:0006537: glutamate biosynthetic process1.83E-03
69GO:0009800: cinnamic acid biosynthetic process1.83E-03
70GO:0010731: protein glutathionylation1.83E-03
71GO:0006424: glutamyl-tRNA aminoacylation1.83E-03
72GO:0009409: response to cold1.92E-03
73GO:0009768: photosynthesis, light harvesting in photosystem I2.05E-03
74GO:0055114: oxidation-reduction process2.18E-03
75GO:0010037: response to carbon dioxide2.45E-03
76GO:0006808: regulation of nitrogen utilization2.45E-03
77GO:0019676: ammonia assimilation cycle2.45E-03
78GO:0015976: carbon utilization2.45E-03
79GO:0071486: cellular response to high light intensity2.45E-03
80GO:0015994: chlorophyll metabolic process2.45E-03
81GO:2000122: negative regulation of stomatal complex development2.45E-03
82GO:0016226: iron-sulfur cluster assembly2.46E-03
83GO:0009644: response to high light intensity2.51E-03
84GO:0016120: carotene biosynthetic process3.14E-03
85GO:0032543: mitochondrial translation3.14E-03
86GO:0006544: glycine metabolic process3.14E-03
87GO:0006564: L-serine biosynthetic process3.14E-03
88GO:0043097: pyrimidine nucleoside salvage3.14E-03
89GO:0010236: plastoquinone biosynthetic process3.14E-03
90GO:0045038: protein import into chloroplast thylakoid membrane3.14E-03
91GO:0031365: N-terminal protein amino acid modification3.14E-03
92GO:0006461: protein complex assembly3.14E-03
93GO:0006364: rRNA processing3.32E-03
94GO:0042631: cellular response to water deprivation3.42E-03
95GO:0032973: amino acid export3.88E-03
96GO:0018258: protein O-linked glycosylation via hydroxyproline3.88E-03
97GO:0006563: L-serine metabolic process3.88E-03
98GO:0010405: arabinogalactan protein metabolic process3.88E-03
99GO:0042549: photosystem II stabilization3.88E-03
100GO:0016554: cytidine to uridine editing3.88E-03
101GO:0006559: L-phenylalanine catabolic process3.88E-03
102GO:0006206: pyrimidine nucleobase metabolic process3.88E-03
103GO:0007018: microtubule-based movement3.96E-03
104GO:0042254: ribosome biogenesis4.41E-03
105GO:1901259: chloroplast rRNA processing4.67E-03
106GO:0010189: vitamin E biosynthetic process4.67E-03
107GO:0009955: adaxial/abaxial pattern specification4.67E-03
108GO:0042026: protein refolding4.67E-03
109GO:0006458: 'de novo' protein folding4.67E-03
110GO:0006400: tRNA modification5.52E-03
111GO:0006401: RNA catabolic process5.52E-03
112GO:0043090: amino acid import5.52E-03
113GO:0009645: response to low light intensity stimulus5.52E-03
114GO:0032508: DNA duplex unwinding6.41E-03
115GO:2000070: regulation of response to water deprivation6.41E-03
116GO:0009231: riboflavin biosynthetic process6.41E-03
117GO:0048564: photosystem I assembly6.41E-03
118GO:0017004: cytochrome complex assembly7.36E-03
119GO:0015996: chlorophyll catabolic process7.36E-03
120GO:0007186: G-protein coupled receptor signaling pathway7.36E-03
121GO:0009657: plastid organization7.36E-03
122GO:0000373: Group II intron splicing8.35E-03
123GO:0009051: pentose-phosphate shunt, oxidative branch8.35E-03
124GO:0090305: nucleic acid phosphodiester bond hydrolysis8.35E-03
125GO:0006098: pentose-phosphate shunt8.35E-03
126GO:0010206: photosystem II repair8.35E-03
127GO:0080144: amino acid homeostasis8.35E-03
128GO:0090333: regulation of stomatal closure8.35E-03
129GO:0006412: translation8.56E-03
130GO:0010205: photoinhibition9.38E-03
131GO:0035999: tetrahydrofolate interconversion9.38E-03
132GO:1900865: chloroplast RNA modification9.38E-03
133GO:0007623: circadian rhythm1.05E-02
134GO:0055085: transmembrane transport1.16E-02
135GO:0006879: cellular iron ion homeostasis1.16E-02
136GO:0000272: polysaccharide catabolic process1.16E-02
137GO:0019684: photosynthesis, light reaction1.16E-02
138GO:0009089: lysine biosynthetic process via diaminopimelate1.16E-02
139GO:0009073: aromatic amino acid family biosynthetic process1.16E-02
140GO:0043085: positive regulation of catalytic activity1.16E-02
141GO:0045037: protein import into chloroplast stroma1.28E-02
142GO:0006006: glucose metabolic process1.40E-02
143GO:0009636: response to toxic substance1.59E-02
144GO:0090351: seedling development1.65E-02
145GO:0005985: sucrose metabolic process1.65E-02
146GO:0016575: histone deacetylation2.06E-02
147GO:0031408: oxylipin biosynthetic process2.20E-02
148GO:0006730: one-carbon metabolic process2.35E-02
149GO:0080092: regulation of pollen tube growth2.35E-02
150GO:0009416: response to light stimulus2.54E-02
151GO:0042742: defense response to bacterium2.58E-02
152GO:0009561: megagametogenesis2.65E-02
153GO:0045454: cell redox homeostasis3.00E-02
154GO:0006662: glycerol ether metabolic process3.13E-02
155GO:0010182: sugar mediated signaling pathway3.13E-02
156GO:0006520: cellular amino acid metabolic process3.13E-02
157GO:0006508: proteolysis3.14E-02
158GO:0015986: ATP synthesis coupled proton transport3.30E-02
159GO:0019252: starch biosynthetic process3.47E-02
160GO:0009791: post-embryonic development3.47E-02
161GO:0016132: brassinosteroid biosynthetic process3.64E-02
162GO:0002229: defense response to oomycetes3.64E-02
163GO:0032259: methylation3.68E-02
164GO:0007264: small GTPase mediated signal transduction3.81E-02
165GO:0016032: viral process3.81E-02
166GO:1901657: glycosyl compound metabolic process3.99E-02
167GO:0006633: fatty acid biosynthetic process4.26E-02
168GO:0006413: translational initiation4.36E-02
169GO:0000910: cytokinesis4.54E-02
170GO:0016126: sterol biosynthetic process4.72E-02
171GO:0001666: response to hypoxia4.72E-02
RankGO TermAdjusted P value
1GO:0043014: alpha-tubulin binding0.00E+00
2GO:0008974: phosphoribulokinase activity0.00E+00
3GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
4GO:0046905: phytoene synthase activity0.00E+00
5GO:0008465: glycerate dehydrogenase activity0.00E+00
6GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
7GO:0051738: xanthophyll binding0.00E+00
8GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
9GO:0008859: exoribonuclease II activity0.00E+00
10GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
11GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
12GO:0008887: glycerate kinase activity0.00E+00
13GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
14GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
15GO:0051721: protein phosphatase 2A binding0.00E+00
16GO:0042903: tubulin deacetylase activity0.00E+00
17GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
18GO:0045435: lycopene epsilon cyclase activity0.00E+00
19GO:0019843: rRNA binding4.06E-10
20GO:0016168: chlorophyll binding8.17E-09
21GO:0022891: substrate-specific transmembrane transporter activity4.91E-07
22GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.84E-06
23GO:0004375: glycine dehydrogenase (decarboxylating) activity4.51E-05
24GO:0043495: protein anchor8.00E-05
25GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor8.00E-05
26GO:0031072: heat shock protein binding8.21E-05
27GO:0008266: poly(U) RNA binding9.92E-05
28GO:0005528: FK506 binding1.62E-04
29GO:0004222: metalloendopeptidase activity1.82E-04
30GO:0019899: enzyme binding3.16E-04
31GO:0005080: protein kinase C binding3.60E-04
32GO:0051996: squalene synthase activity3.60E-04
33GO:0016041: glutamate synthase (ferredoxin) activity3.60E-04
34GO:0000248: C-5 sterol desaturase activity3.60E-04
35GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.60E-04
36GO:0090422: thiamine pyrophosphate transporter activity3.60E-04
37GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.60E-04
38GO:0009496: plastoquinol--plastocyanin reductase activity3.60E-04
39GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.60E-04
40GO:0004033: aldo-keto reductase (NADP) activity3.97E-04
41GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.48E-04
42GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.86E-04
43GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.83E-04
44GO:0008967: phosphoglycolate phosphatase activity7.83E-04
45GO:0010291: carotene beta-ring hydroxylase activity7.83E-04
46GO:0047746: chlorophyllase activity7.83E-04
47GO:0042389: omega-3 fatty acid desaturase activity7.83E-04
48GO:0010297: heteropolysaccharide binding7.83E-04
49GO:0004326: tetrahydrofolylpolyglutamate synthase activity7.83E-04
50GO:0004617: phosphoglycerate dehydrogenase activity7.83E-04
51GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity7.83E-04
52GO:0004047: aminomethyltransferase activity7.83E-04
53GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.83E-04
54GO:0051082: unfolded protein binding9.59E-04
55GO:0003935: GTP cyclohydrolase II activity1.27E-03
56GO:0030267: glyoxylate reductase (NADP) activity1.27E-03
57GO:0070402: NADPH binding1.27E-03
58GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.27E-03
59GO:0017150: tRNA dihydrouridine synthase activity1.27E-03
60GO:0045548: phenylalanine ammonia-lyase activity1.27E-03
61GO:0032947: protein complex scaffold1.27E-03
62GO:0004148: dihydrolipoyl dehydrogenase activity1.27E-03
63GO:0031409: pigment binding1.67E-03
64GO:0017089: glycolipid transporter activity1.83E-03
65GO:0048487: beta-tubulin binding1.83E-03
66GO:0051536: iron-sulfur cluster binding1.85E-03
67GO:0004345: glucose-6-phosphate dehydrogenase activity2.45E-03
68GO:0051861: glycolipid binding2.45E-03
69GO:0051538: 3 iron, 4 sulfur cluster binding3.14E-03
70GO:0004372: glycine hydroxymethyltransferase activity3.14E-03
71GO:0016773: phosphotransferase activity, alcohol group as acceptor3.14E-03
72GO:0042578: phosphoric ester hydrolase activity3.88E-03
73GO:1990714: hydroxyproline O-galactosyltransferase activity3.88E-03
74GO:0004332: fructose-bisphosphate aldolase activity3.88E-03
75GO:0050662: coenzyme binding3.96E-03
76GO:0048038: quinone binding4.55E-03
77GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.67E-03
78GO:0004849: uridine kinase activity4.67E-03
79GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.67E-03
80GO:0003735: structural constituent of ribosome4.78E-03
81GO:0008235: metalloexopeptidase activity5.52E-03
82GO:0016787: hydrolase activity5.69E-03
83GO:0008237: metallopeptidase activity5.86E-03
84GO:0008135: translation factor activity, RNA binding7.36E-03
85GO:0015078: hydrogen ion transmembrane transporter activity7.36E-03
86GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.36E-03
87GO:0005381: iron ion transmembrane transporter activity9.38E-03
88GO:0008047: enzyme activator activity1.05E-02
89GO:0004177: aminopeptidase activity1.16E-02
90GO:0044183: protein binding involved in protein folding1.16E-02
91GO:0047372: acylglycerol lipase activity1.16E-02
92GO:0005089: Rho guanyl-nucleotide exchange factor activity1.16E-02
93GO:0015386: potassium:proton antiporter activity1.16E-02
94GO:0004364: glutathione transferase activity1.36E-02
95GO:0004022: alcohol dehydrogenase (NAD) activity1.40E-02
96GO:0004089: carbonate dehydratase activity1.40E-02
97GO:0000175: 3'-5'-exoribonuclease activity1.40E-02
98GO:0042802: identical protein binding1.42E-02
99GO:0051537: 2 iron, 2 sulfur cluster binding1.53E-02
100GO:0046872: metal ion binding1.54E-02
101GO:0005198: structural molecule activity1.59E-02
102GO:0008146: sulfotransferase activity1.65E-02
103GO:0051287: NAD binding1.71E-02
104GO:0008168: methyltransferase activity1.74E-02
105GO:0004407: histone deacetylase activity1.92E-02
106GO:0043424: protein histidine kinase binding2.06E-02
107GO:0015079: potassium ion transmembrane transporter activity2.06E-02
108GO:0016887: ATPase activity2.08E-02
109GO:0003777: microtubule motor activity2.11E-02
110GO:0004176: ATP-dependent peptidase activity2.20E-02
111GO:0004540: ribonuclease activity2.20E-02
112GO:0005509: calcium ion binding2.25E-02
113GO:0047134: protein-disulfide reductase activity2.81E-02
114GO:0003824: catalytic activity3.01E-02
115GO:0004791: thioredoxin-disulfide reductase activity3.30E-02
116GO:0005515: protein binding3.43E-02
117GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.49E-02
118GO:0004518: nuclease activity3.81E-02
119GO:0003924: GTPase activity3.89E-02
120GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.99E-02
121GO:0008483: transaminase activity4.35E-02
122GO:0016597: amino acid binding4.54E-02
123GO:0008017: microtubule binding4.89E-02
124GO:0003723: RNA binding4.97E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009507: chloroplast1.17E-90
3GO:0009535: chloroplast thylakoid membrane1.31E-41
4GO:0009570: chloroplast stroma1.07E-31
5GO:0009941: chloroplast envelope5.49E-30
6GO:0009579: thylakoid8.83E-23
7GO:0009543: chloroplast thylakoid lumen1.30E-20
8GO:0009534: chloroplast thylakoid7.73E-19
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.19E-11
10GO:0031977: thylakoid lumen9.84E-11
11GO:0009523: photosystem II1.20E-09
12GO:0009654: photosystem II oxygen evolving complex4.12E-09
13GO:0042651: thylakoid membrane2.24E-07
14GO:0031969: chloroplast membrane6.30E-07
15GO:0019898: extrinsic component of membrane1.78E-06
16GO:0030095: chloroplast photosystem II3.34E-06
17GO:0010319: stromule4.22E-06
18GO:0005960: glycine cleavage complex4.51E-05
19GO:0005840: ribosome8.11E-05
20GO:0009706: chloroplast inner membrane1.55E-04
21GO:0048046: apoplast1.68E-04
22GO:0010287: plastoglobule2.19E-04
23GO:0009344: nitrite reductase complex [NAD(P)H]3.60E-04
24GO:0009782: photosystem I antenna complex3.60E-04
25GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.60E-04
26GO:0042170: plastid membrane7.83E-04
27GO:0000427: plastid-encoded plastid RNA polymerase complex7.83E-04
28GO:0009528: plastid inner membrane1.27E-03
29GO:0015934: large ribosomal subunit1.46E-03
30GO:0030076: light-harvesting complex1.50E-03
31GO:0005759: mitochondrial matrix1.91E-03
32GO:0009532: plastid stroma2.25E-03
33GO:0009527: plastid outer membrane2.45E-03
34GO:0009517: PSII associated light-harvesting complex II2.45E-03
35GO:0009512: cytochrome b6f complex3.14E-03
36GO:0000178: exosome (RNase complex)3.14E-03
37GO:0005871: kinesin complex3.16E-03
38GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.88E-03
39GO:0009533: chloroplast stromal thylakoid5.52E-03
40GO:0009539: photosystem II reaction center7.36E-03
41GO:0005763: mitochondrial small ribosomal subunit8.35E-03
42GO:0016324: apical plasma membrane1.05E-02
43GO:0016020: membrane1.20E-02
44GO:0032040: small-subunit processome1.28E-02
45GO:0016021: integral component of membrane1.30E-02
46GO:0015935: small ribosomal subunit2.20E-02
47GO:0005874: microtubule2.29E-02
48GO:0009522: photosystem I3.30E-02
49GO:0009504: cell plate3.47E-02
50GO:0005623: cell3.49E-02
51GO:0009536: plastid3.61E-02
52GO:0005694: chromosome3.81E-02
53GO:0005778: peroxisomal membrane4.35E-02
54GO:0000932: P-body4.72E-02
55GO:0030529: intracellular ribonucleoprotein complex4.72E-02
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Gene type



Gene DE type