Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G32060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
2GO:0046471: phosphatidylglycerol metabolic process0.00E+00
3GO:0006982: response to lipid hydroperoxide0.00E+00
4GO:0010335: response to non-ionic osmotic stress0.00E+00
5GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
6GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
7GO:0042821: pyridoxal biosynthetic process0.00E+00
8GO:0005996: monosaccharide metabolic process0.00E+00
9GO:0042820: vitamin B6 catabolic process0.00E+00
10GO:0090393: sepal giant cell development0.00E+00
11GO:0090042: tubulin deacetylation0.00E+00
12GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly9.53E-08
13GO:0019464: glycine decarboxylation via glycine cleavage system2.78E-07
14GO:0006546: glycine catabolic process2.78E-07
15GO:0009773: photosynthetic electron transport in photosystem I4.34E-07
16GO:0006094: gluconeogenesis8.26E-07
17GO:0006810: transport1.11E-06
18GO:0010275: NAD(P)H dehydrogenase complex assembly3.02E-06
19GO:0009658: chloroplast organization5.98E-06
20GO:0055114: oxidation-reduction process8.77E-06
21GO:0046686: response to cadmium ion9.87E-06
22GO:0006098: pentose-phosphate shunt1.07E-05
23GO:0009767: photosynthetic electron transport chain3.79E-05
24GO:0005986: sucrose biosynthetic process3.79E-05
25GO:0006021: inositol biosynthetic process4.46E-05
26GO:0009902: chloroplast relocation4.46E-05
27GO:0009853: photorespiration9.61E-05
28GO:0016117: carotenoid biosynthetic process1.72E-04
29GO:0010196: nonphotochemical quenching1.88E-04
30GO:0048564: photosystem I assembly2.38E-04
31GO:0009704: de-etiolation2.38E-04
32GO:0006723: cuticle hydrocarbon biosynthetic process2.55E-04
33GO:0006659: phosphatidylserine biosynthetic process2.55E-04
34GO:0051775: response to redox state2.55E-04
35GO:0071277: cellular response to calcium ion2.55E-04
36GO:0080093: regulation of photorespiration2.55E-04
37GO:0031998: regulation of fatty acid beta-oxidation2.55E-04
38GO:0010362: negative regulation of anion channel activity by blue light2.55E-04
39GO:0051180: vitamin transport2.55E-04
40GO:0009443: pyridoxal 5'-phosphate salvage2.55E-04
41GO:0030974: thiamine pyrophosphate transport2.55E-04
42GO:0019252: starch biosynthetic process2.61E-04
43GO:0009791: post-embryonic development2.61E-04
44GO:0006096: glycolytic process3.31E-04
45GO:0097054: L-glutamate biosynthetic process5.64E-04
46GO:1904143: positive regulation of carotenoid biosynthetic process5.64E-04
47GO:0030388: fructose 1,6-bisphosphate metabolic process5.64E-04
48GO:0042819: vitamin B6 biosynthetic process5.64E-04
49GO:1902326: positive regulation of chlorophyll biosynthetic process5.64E-04
50GO:0015893: drug transport5.64E-04
51GO:0034755: iron ion transmembrane transport5.64E-04
52GO:0006108: malate metabolic process7.37E-04
53GO:0009416: response to light stimulus8.08E-04
54GO:0019253: reductive pentose-phosphate cycle8.30E-04
55GO:0010207: photosystem II assembly8.30E-04
56GO:0006696: ergosterol biosynthetic process9.15E-04
57GO:0005977: glycogen metabolic process9.15E-04
58GO:0006011: UDP-glucose metabolic process9.15E-04
59GO:0000913: preprophase band assembly9.15E-04
60GO:0031022: nuclear migration along microfilament9.15E-04
61GO:0006000: fructose metabolic process9.15E-04
62GO:0043447: alkane biosynthetic process9.15E-04
63GO:0007623: circadian rhythm1.02E-03
64GO:0032877: positive regulation of DNA endoreduplication1.31E-03
65GO:0046836: glycolipid transport1.31E-03
66GO:0006020: inositol metabolic process1.31E-03
67GO:0006107: oxaloacetate metabolic process1.31E-03
68GO:0006537: glutamate biosynthetic process1.31E-03
69GO:0009800: cinnamic acid biosynthetic process1.31E-03
70GO:0008615: pyridoxine biosynthetic process1.31E-03
71GO:0010731: protein glutathionylation1.31E-03
72GO:0042823: pyridoxal phosphate biosynthetic process1.31E-03
73GO:0080092: regulation of pollen tube growth1.50E-03
74GO:0016226: iron-sulfur cluster assembly1.50E-03
75GO:0010021: amylopectin biosynthetic process1.75E-03
76GO:0019676: ammonia assimilation cycle1.75E-03
77GO:0045727: positive regulation of translation1.75E-03
78GO:0015994: chlorophyll metabolic process1.75E-03
79GO:0006734: NADH metabolic process1.75E-03
80GO:0042631: cellular response to water deprivation2.07E-03
81GO:0006097: glyoxylate cycle2.23E-03
82GO:0016123: xanthophyll biosynthetic process2.23E-03
83GO:0009247: glycolipid biosynthetic process2.23E-03
84GO:0016120: carotene biosynthetic process2.23E-03
85GO:0006564: L-serine biosynthetic process2.23E-03
86GO:0009904: chloroplast accumulation movement2.23E-03
87GO:0006544: glycine metabolic process2.23E-03
88GO:0006520: cellular amino acid metabolic process2.24E-03
89GO:0009646: response to absence of light2.40E-03
90GO:0009735: response to cytokinin2.69E-03
91GO:0046855: inositol phosphate dephosphorylation2.75E-03
92GO:0010942: positive regulation of cell death2.75E-03
93GO:0006563: L-serine metabolic process2.75E-03
94GO:0010304: PSII associated light-harvesting complex II catabolic process2.75E-03
95GO:0042549: photosystem II stabilization2.75E-03
96GO:0080167: response to karrikin2.75E-03
97GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.75E-03
98GO:0070814: hydrogen sulfide biosynthetic process2.75E-03
99GO:0006559: L-phenylalanine catabolic process2.75E-03
100GO:0030163: protein catabolic process3.13E-03
101GO:1901259: chloroplast rRNA processing3.30E-03
102GO:0009903: chloroplast avoidance movement3.30E-03
103GO:0009854: oxidative photosynthetic carbon pathway3.30E-03
104GO:0042026: protein refolding3.30E-03
105GO:0006458: 'de novo' protein folding3.30E-03
106GO:0015979: photosynthesis3.36E-03
107GO:0009645: response to low light intensity stimulus3.89E-03
108GO:0010027: thylakoid membrane organization3.97E-03
109GO:0052543: callose deposition in cell wall4.52E-03
110GO:0008610: lipid biosynthetic process4.52E-03
111GO:0005978: glycogen biosynthetic process4.52E-03
112GO:0019375: galactolipid biosynthetic process4.52E-03
113GO:0032544: plastid translation5.18E-03
114GO:0018298: protein-chromophore linkage5.18E-03
115GO:0017004: cytochrome complex assembly5.18E-03
116GO:0006002: fructose 6-phosphate metabolic process5.18E-03
117GO:0071482: cellular response to light stimulus5.18E-03
118GO:0009657: plastid organization5.18E-03
119GO:0000373: Group II intron splicing5.86E-03
120GO:0009056: catabolic process5.86E-03
121GO:0009821: alkaloid biosynthetic process5.86E-03
122GO:0010206: photosystem II repair5.86E-03
123GO:0090333: regulation of stomatal closure5.86E-03
124GO:0005982: starch metabolic process6.58E-03
125GO:0010205: photoinhibition6.58E-03
126GO:0009638: phototropism6.58E-03
127GO:0035999: tetrahydrofolate interconversion6.58E-03
128GO:0006099: tricarboxylic acid cycle6.86E-03
129GO:0045036: protein targeting to chloroplast7.33E-03
130GO:0009970: cellular response to sulfate starvation7.33E-03
131GO:0000103: sulfate assimilation7.33E-03
132GO:0006415: translational termination8.11E-03
133GO:0018119: peptidyl-cysteine S-nitrosylation8.11E-03
134GO:0019684: photosynthesis, light reaction8.11E-03
135GO:0006879: cellular iron ion homeostasis8.11E-03
136GO:0000272: polysaccharide catabolic process8.11E-03
137GO:0009744: response to sucrose8.47E-03
138GO:0006790: sulfur compound metabolic process8.92E-03
139GO:0006006: glucose metabolic process9.75E-03
140GO:0042742: defense response to bacterium1.08E-02
141GO:0046854: phosphatidylinositol phosphorylation1.15E-02
142GO:0042343: indole glucosinolate metabolic process1.15E-02
143GO:0009611: response to wounding1.23E-02
144GO:0010025: wax biosynthetic process1.24E-02
145GO:0006636: unsaturated fatty acid biosynthetic process1.24E-02
146GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.32E-02
147GO:0046777: protein autophosphorylation1.37E-02
148GO:0016575: histone deacetylation1.43E-02
149GO:0009768: photosynthesis, light harvesting in photosystem I1.43E-02
150GO:0007017: microtubule-based process1.43E-02
151GO:0098542: defense response to other organism1.53E-02
152GO:0061077: chaperone-mediated protein folding1.53E-02
153GO:0006730: one-carbon metabolic process1.64E-02
154GO:0030433: ubiquitin-dependent ERAD pathway1.64E-02
155GO:0006457: protein folding1.75E-02
156GO:0006629: lipid metabolic process2.06E-02
157GO:0010118: stomatal movement2.07E-02
158GO:0042335: cuticle development2.07E-02
159GO:0009741: response to brassinosteroid2.18E-02
160GO:0015986: ATP synthesis coupled proton transport2.29E-02
161GO:0007018: microtubule-based movement2.29E-02
162GO:0006814: sodium ion transport2.29E-02
163GO:0008654: phospholipid biosynthetic process2.41E-02
164GO:0002229: defense response to oomycetes2.53E-02
165GO:0032502: developmental process2.65E-02
166GO:0016032: viral process2.65E-02
167GO:0048235: pollen sperm cell differentiation2.65E-02
168GO:0010090: trichome morphogenesis2.78E-02
169GO:0000910: cytokinesis3.16E-02
170GO:0001666: response to hypoxia3.29E-02
171GO:0009816: defense response to bacterium, incompatible interaction3.42E-02
172GO:0042128: nitrate assimilation3.56E-02
173GO:0009817: defense response to fungus, incompatible interaction3.97E-02
174GO:0030244: cellulose biosynthetic process3.97E-02
175GO:0000160: phosphorelay signal transduction system4.12E-02
176GO:0009637: response to blue light4.70E-02
177GO:0016051: carbohydrate biosynthetic process4.70E-02
RankGO TermAdjusted P value
1GO:0046905: phytoene synthase activity0.00E+00
2GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
3GO:0008465: glycerate dehydrogenase activity0.00E+00
4GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
5GO:0051738: xanthophyll binding0.00E+00
6GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
7GO:0050281: serine-glyoxylate transaminase activity0.00E+00
8GO:0016719: carotene 7,8-desaturase activity0.00E+00
9GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
10GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
11GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
12GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
13GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
14GO:0051721: protein phosphatase 2A binding0.00E+00
15GO:0043014: alpha-tubulin binding0.00E+00
16GO:0042903: tubulin deacetylase activity0.00E+00
17GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
18GO:0004760: serine-pyruvate transaminase activity0.00E+00
19GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
20GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.78E-07
21GO:0004332: fructose-bisphosphate aldolase activity1.23E-06
22GO:0050307: sucrose-phosphate phosphatase activity1.09E-05
23GO:0048038: quinone binding1.74E-05
24GO:0004375: glycine dehydrogenase (decarboxylating) activity2.46E-05
25GO:0051861: glycolipid binding4.46E-05
26GO:0016615: malate dehydrogenase activity1.04E-04
27GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.43E-04
28GO:0030060: L-malate dehydrogenase activity1.43E-04
29GO:0004033: aldo-keto reductase (NADP) activity2.38E-04
30GO:0051996: squalene synthase activity2.55E-04
31GO:0008746: NAD(P)+ transhydrogenase activity2.55E-04
32GO:0016041: glutamate synthase (ferredoxin) activity2.55E-04
33GO:0030941: chloroplast targeting sequence binding2.55E-04
34GO:0090422: thiamine pyrophosphate transporter activity2.55E-04
35GO:0009496: plastoquinol--plastocyanin reductase activity2.55E-04
36GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.55E-04
37GO:0016787: hydrolase activity5.53E-04
38GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.64E-04
39GO:0008967: phosphoglycolate phosphatase activity5.64E-04
40GO:0010291: carotene beta-ring hydroxylase activity5.64E-04
41GO:0010297: heteropolysaccharide binding5.64E-04
42GO:0004617: phosphoglycerate dehydrogenase activity5.64E-04
43GO:0004047: aminomethyltransferase activity5.64E-04
44GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity5.64E-04
45GO:0052832: inositol monophosphate 3-phosphatase activity5.64E-04
46GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.64E-04
47GO:0003844: 1,4-alpha-glucan branching enzyme activity5.64E-04
48GO:0008934: inositol monophosphate 1-phosphatase activity5.64E-04
49GO:0052833: inositol monophosphate 4-phosphatase activity5.64E-04
50GO:0004512: inositol-3-phosphate synthase activity5.64E-04
51GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity5.64E-04
52GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.64E-04
53GO:0005089: Rho guanyl-nucleotide exchange factor activity5.68E-04
54GO:0031072: heat shock protein binding7.37E-04
55GO:0008266: poly(U) RNA binding8.30E-04
56GO:0004781: sulfate adenylyltransferase (ATP) activity9.15E-04
57GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity9.15E-04
58GO:0070402: NADPH binding9.15E-04
59GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity9.15E-04
60GO:0043169: cation binding9.15E-04
61GO:0045548: phenylalanine ammonia-lyase activity9.15E-04
62GO:0032947: protein complex scaffold9.15E-04
63GO:0004148: dihydrolipoyl dehydrogenase activity9.15E-04
64GO:0051536: iron-sulfur cluster binding1.14E-03
65GO:0009882: blue light photoreceptor activity1.31E-03
66GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.31E-03
67GO:0008508: bile acid:sodium symporter activity1.31E-03
68GO:0017089: glycolipid transporter activity1.31E-03
69GO:0035250: UDP-galactosyltransferase activity1.31E-03
70GO:0048487: beta-tubulin binding1.31E-03
71GO:0016149: translation release factor activity, codon specific1.31E-03
72GO:0004176: ATP-dependent peptidase activity1.37E-03
73GO:0051287: NAD binding1.53E-03
74GO:0016491: oxidoreductase activity1.73E-03
75GO:0008453: alanine-glyoxylate transaminase activity1.75E-03
76GO:0009011: starch synthase activity1.75E-03
77GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.75E-03
78GO:0051538: 3 iron, 4 sulfur cluster binding2.23E-03
79GO:0008374: O-acyltransferase activity2.23E-03
80GO:0004372: glycine hydroxymethyltransferase activity2.23E-03
81GO:0051082: unfolded protein binding2.74E-03
82GO:0042578: phosphoric ester hydrolase activity2.75E-03
83GO:0080030: methyl indole-3-acetate esterase activity2.75E-03
84GO:0000210: NAD+ diphosphatase activity2.75E-03
85GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.30E-03
86GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.30E-03
87GO:0019843: rRNA binding3.65E-03
88GO:0016168: chlorophyll binding4.20E-03
89GO:0043022: ribosome binding4.52E-03
90GO:0008135: translation factor activity, RNA binding5.18E-03
91GO:0015078: hydrogen ion transmembrane transporter activity5.18E-03
92GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.18E-03
93GO:0004222: metalloendopeptidase activity5.71E-03
94GO:0003747: translation release factor activity5.86E-03
95GO:0016614: oxidoreductase activity, acting on CH-OH group of donors5.99E-03
96GO:0016844: strictosidine synthase activity6.58E-03
97GO:0005381: iron ion transmembrane transporter activity6.58E-03
98GO:0044183: protein binding involved in protein folding8.11E-03
99GO:0047372: acylglycerol lipase activity8.11E-03
100GO:0015386: potassium:proton antiporter activity8.11E-03
101GO:0004860: protein kinase inhibitor activity8.11E-03
102GO:0051537: 2 iron, 2 sulfur cluster binding9.16E-03
103GO:0005198: structural molecule activity9.53E-03
104GO:0004089: carbonate dehydratase activity9.75E-03
105GO:0000155: phosphorelay sensor kinase activity9.75E-03
106GO:0050660: flavin adenine dinucleotide binding1.15E-02
107GO:0031409: pigment binding1.24E-02
108GO:0003777: microtubule motor activity1.27E-02
109GO:0004407: histone deacetylase activity1.34E-02
110GO:0043424: protein histidine kinase binding1.43E-02
111GO:0015079: potassium ion transmembrane transporter activity1.43E-02
112GO:0022891: substrate-specific transmembrane transporter activity1.74E-02
113GO:0003756: protein disulfide isomerase activity1.85E-02
114GO:0008080: N-acetyltransferase activity2.18E-02
115GO:0009055: electron carrier activity2.25E-02
116GO:0050662: coenzyme binding2.29E-02
117GO:0010181: FMN binding2.29E-02
118GO:0005509: calcium ion binding3.01E-02
119GO:0008237: metallopeptidase activity3.03E-02
120GO:0008483: transaminase activity3.03E-02
121GO:0016597: amino acid binding3.16E-02
122GO:0005506: iron ion binding3.31E-02
123GO:0009931: calcium-dependent protein serine/threonine kinase activity3.56E-02
124GO:0004683: calmodulin-dependent protein kinase activity3.70E-02
125GO:0003824: catalytic activity3.87E-02
126GO:0005215: transporter activity3.91E-02
127GO:0015238: drug transmembrane transporter activity4.12E-02
128GO:0008168: methyltransferase activity4.20E-02
129GO:0000287: magnesium ion binding4.28E-02
130GO:0050897: cobalt ion binding4.41E-02
131GO:0005524: ATP binding4.42E-02
132GO:0016788: hydrolase activity, acting on ester bonds4.44E-02
133GO:0003746: translation elongation factor activity4.70E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0042579: microbody0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0009575: chromoplast stroma0.00E+00
5GO:0009507: chloroplast9.58E-53
6GO:0009941: chloroplast envelope5.70E-26
7GO:0009535: chloroplast thylakoid membrane1.10E-24
8GO:0009570: chloroplast stroma1.07E-23
9GO:0009534: chloroplast thylakoid3.61E-17
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.24E-17
11GO:0048046: apoplast1.81E-09
12GO:0009579: thylakoid8.25E-09
13GO:0010287: plastoglobule3.70E-07
14GO:0031969: chloroplast membrane1.19E-05
15GO:0005960: glycine cleavage complex2.46E-05
16GO:0030095: chloroplast photosystem II4.63E-05
17GO:0009654: photosystem II oxygen evolving complex9.04E-05
18GO:0016020: membrane1.32E-04
19GO:0009782: photosystem I antenna complex2.55E-04
20GO:0019898: extrinsic component of membrane2.61E-04
21GO:0010319: stromule4.00E-04
22GO:0000427: plastid-encoded plastid RNA polymerase complex5.64E-04
23GO:0009543: chloroplast thylakoid lumen6.29E-04
24GO:0009707: chloroplast outer membrane6.53E-04
25GO:0009509: chromoplast9.15E-04
26GO:0030286: dynein complex1.75E-03
27GO:0009517: PSII associated light-harvesting complex II1.75E-03
28GO:0009512: cytochrome b6f complex2.23E-03
29GO:0009523: photosystem II2.57E-03
30GO:0009706: chloroplast inner membrane2.74E-03
31GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)2.75E-03
32GO:0031359: integral component of chloroplast outer membrane3.89E-03
33GO:0009501: amyloplast4.52E-03
34GO:0005759: mitochondrial matrix4.87E-03
35GO:0016324: apical plasma membrane7.33E-03
36GO:0009508: plastid chromosome9.75E-03
37GO:0019013: viral nucleocapsid9.75E-03
38GO:0030076: light-harvesting complex1.15E-02
39GO:0005875: microtubule associated complex1.24E-02
40GO:0042651: thylakoid membrane1.43E-02
41GO:0005777: peroxisome1.46E-02
42GO:0016021: integral component of membrane1.76E-02
43GO:0005871: kinesin complex1.95E-02
44GO:0005623: cell2.10E-02
45GO:0009504: cell plate2.41E-02
46GO:0005694: chromosome2.65E-02
47GO:0009295: nucleoid3.03E-02
48GO:0030529: intracellular ribonucleoprotein complex3.29E-02
49GO:0022626: cytosolic ribosome3.99E-02
50GO:0005829: cytosol4.01E-02
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Gene type



Gene DE type