co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G31920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033231: carbohydrate export	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0090706: specification of plant organ position	0.00E+00
4	GO:0010207: photosystem II assembly	1.46E-05
5	GO:0015979: photosynthesis	2.23E-05
6	GO:0016120: carotene biosynthetic process	3.07E-05
7	GO:0006655: phosphatidylglycerol biosynthetic process	4.59E-05
8	GO:0042549: photosystem II stabilization	4.59E-05
9	GO:1901259: chloroplast rRNA processing	6.42E-05
10	GO:0032544: plastid translation	1.39E-04
11	GO:0043953: protein transport by the Tat complex	1.54E-04
12	GO:1904966: positive regulation of vitamin E biosynthetic process	1.54E-04
13	GO:0010480: microsporocyte differentiation	1.54E-04
14	GO:1904964: positive regulation of phytol biosynthetic process	1.54E-04
15	GO:0065002: intracellular protein transmembrane transport	1.54E-04
16	GO:0043686: co-translational protein modification	1.54E-04
17	GO:0034337: RNA folding	1.54E-04
18	GO:0010450: inflorescence meristem growth	1.54E-04
19	GO:0000305: response to oxygen radical	1.54E-04
20	GO:1902334: fructose export from vacuole to cytoplasm	1.54E-04
21	GO:0015755: fructose transport	1.54E-04
22	GO:0015995: chlorophyll biosynthetic process	2.25E-04
23	GO:0009773: photosynthetic electron transport in photosystem I	2.81E-04
24	GO:0043085: positive regulation of catalytic activity	2.81E-04
25	GO:0009750: response to fructose	2.81E-04
26	GO:0016024: CDP-diacylglycerol biosynthetic process	3.23E-04
27	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.51E-04
28	GO:0035304: regulation of protein dephosphorylation	3.51E-04
29	GO:0080005: photosystem stoichiometry adjustment	3.51E-04
30	GO:0010115: regulation of abscisic acid biosynthetic process	3.51E-04
31	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.51E-04
32	GO:0090391: granum assembly	5.75E-04
33	GO:0045165: cell fate commitment	5.75E-04
34	GO:1902448: positive regulation of shade avoidance	5.75E-04
35	GO:0006364: rRNA processing	7.17E-04
36	GO:0009052: pentose-phosphate shunt, non-oxidative branch	8.23E-04
37	GO:0071369: cellular response to ethylene stimulus	8.23E-04
38	GO:0010371: regulation of gibberellin biosynthetic process	8.23E-04
39	GO:0010239: chloroplast mRNA processing	8.23E-04
40	GO:0080170: hydrogen peroxide transmembrane transport	8.23E-04
41	GO:0016117: carotenoid biosynthetic process	9.61E-04
42	GO:0006749: glutathione metabolic process	1.09E-03
43	GO:0009765: photosynthesis, light harvesting	1.09E-03
44	GO:0006109: regulation of carbohydrate metabolic process	1.09E-03
45	GO:0045727: positive regulation of translation	1.09E-03
46	GO:0055085: transmembrane transport	1.34E-03
47	GO:0031365: N-terminal protein amino acid modification	1.38E-03
48	GO:1902183: regulation of shoot apical meristem development	1.38E-03
49	GO:0010438: cellular response to sulfur starvation	1.38E-03
50	GO:0010158: abaxial cell fate specification	1.38E-03
51	GO:0009759: indole glucosinolate biosynthetic process	1.70E-03
52	GO:0006561: proline biosynthetic process	1.70E-03
53	GO:0016554: cytidine to uridine editing	1.70E-03
54	GO:0010027: thylakoid membrane organization	1.96E-03
55	GO:0010019: chloroplast-nucleus signaling pathway	2.03E-03
56	GO:0007623: circadian rhythm	2.20E-03
57	GO:0048437: floral organ development	2.39E-03
58	GO:0010196: nonphotochemical quenching	2.39E-03
59	GO:1900057: positive regulation of leaf senescence	2.39E-03
60	GO:0010444: guard mother cell differentiation	2.39E-03
61	GO:0018298: protein-chromophore linkage	2.54E-03
62	GO:0009642: response to light intensity	2.77E-03
63	GO:0006353: DNA-templated transcription, termination	2.77E-03
64	GO:0030091: protein repair	2.77E-03
65	GO:0010093: specification of floral organ identity	3.16E-03
66	GO:0010206: photosystem II repair	3.58E-03
67	GO:2000024: regulation of leaf development	3.58E-03
68	GO:1900865: chloroplast RNA modification	4.01E-03
69	GO:0010205: photoinhibition	4.01E-03
70	GO:0006995: cellular response to nitrogen starvation	4.46E-03
71	GO:0009688: abscisic acid biosynthetic process	4.46E-03
72	GO:0008285: negative regulation of cell proliferation	4.92E-03
73	GO:0019684: photosynthesis, light reaction	4.92E-03
74	GO:1903507: negative regulation of nucleic acid-templated transcription	4.92E-03
75	GO:0048229: gametophyte development	4.92E-03
76	GO:0002213: defense response to insect	5.41E-03
77	GO:0010152: pollen maturation	5.41E-03
78	GO:0010628: positive regulation of gene expression	5.91E-03
79	GO:0009718: anthocyanin-containing compound biosynthetic process	5.91E-03
80	GO:0010075: regulation of meristem growth	5.91E-03
81	GO:0009933: meristem structural organization	6.42E-03
82	GO:0009934: regulation of meristem structural organization	6.42E-03
83	GO:0071732: cellular response to nitric oxide	6.95E-03
84	GO:0010025: wax biosynthetic process	7.49E-03
85	GO:0009833: plant-type primary cell wall biogenesis	7.49E-03
86	GO:0006833: water transport	7.49E-03
87	GO:0000162: tryptophan biosynthetic process	7.49E-03
88	GO:0009944: polarity specification of adaxial/abaxial axis	8.05E-03
89	GO:0009695: jasmonic acid biosynthetic process	8.63E-03
90	GO:0010073: meristem maintenance	8.63E-03
91	GO:0031408: oxylipin biosynthetic process	9.22E-03
92	GO:0051260: protein homooligomerization	9.22E-03
93	GO:0008152: metabolic process	9.35E-03
94	GO:2000022: regulation of jasmonic acid mediated signaling pathway	9.82E-03
95	GO:0010227: floral organ abscission	1.04E-02
96	GO:0042127: regulation of cell proliferation	1.11E-02
97	GO:0048443: stamen development	1.11E-02
98	GO:0070417: cellular response to cold	1.17E-02
99	GO:0034220: ion transmembrane transport	1.24E-02
100	GO:0000413: protein peptidyl-prolyl isomerization	1.24E-02
101	GO:0048653: anther development	1.24E-02
102	GO:0010154: fruit development	1.31E-02
103	GO:0006662: glycerol ether metabolic process	1.31E-02
104	GO:0010182: sugar mediated signaling pathway	1.31E-02
105	GO:0009646: response to absence of light	1.37E-02
106	GO:0009735: response to cytokinin	1.53E-02
107	GO:0055114: oxidation-reduction process	1.55E-02
108	GO:0007166: cell surface receptor signaling pathway	1.57E-02
109	GO:0016032: viral process	1.59E-02
110	GO:0071281: cellular response to iron ion	1.66E-02
111	GO:0009567: double fertilization forming a zygote and endosperm	1.74E-02
112	GO:0071805: potassium ion transmembrane transport	1.81E-02
113	GO:0016126: sterol biosynthetic process	1.97E-02
114	GO:0045893: positive regulation of transcription, DNA-templated	2.04E-02
115	GO:0005975: carbohydrate metabolic process	2.16E-02
116	GO:0007049: cell cycle	2.37E-02
117	GO:0030244: cellulose biosynthetic process	2.38E-02
118	GO:0010311: lateral root formation	2.46E-02
119	GO:0000160: phosphorelay signal transduction system	2.46E-02
120	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.73E-02
121	GO:0034599: cellular response to oxidative stress	2.90E-02
122	GO:0045454: cell redox homeostasis	3.16E-02
123	GO:0009640: photomorphogenesis	3.37E-02
124	GO:0009644: response to high light intensity	3.56E-02
125	GO:0031347: regulation of defense response	3.86E-02
126	GO:0009753: response to jasmonic acid	4.16E-02
127	GO:0009585: red, far-red light phototransduction	4.17E-02
128	GO:0006813: potassium ion transport	4.17E-02
129	GO:0009736: cytokinin-activated signaling pathway	4.17E-02
130	GO:0006857: oligopeptide transport	4.37E-02
131	GO:0009909: regulation of flower development	4.48E-02
132	GO:0043086: negative regulation of catalytic activity	4.69E-02
133	GO:0048316: seed development	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0016166: phytoene dehydrogenase activity	0.00E+00
3	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
4	GO:0038198: auxin receptor activity	0.00E+00
5	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
6	GO:0015284: fructose uniporter activity	0.00E+00
7	GO:0045436: lycopene beta cyclase activity	0.00E+00
8	GO:0019899: enzyme binding	8.59E-05
9	GO:0010242: oxygen evolving activity	1.54E-04
10	GO:0042586: peptide deformylase activity	1.54E-04
11	GO:0004321: fatty-acyl-CoA synthase activity	1.54E-04
12	GO:0050139: nicotinate-N-glucosyltransferase activity	1.54E-04
13	GO:0046906: tetrapyrrole binding	1.54E-04
14	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.54E-04
15	GO:0019843: rRNA binding	2.00E-04
16	GO:0000822: inositol hexakisphosphate binding	3.51E-04
17	GO:0005353: fructose transmembrane transporter activity	3.51E-04
18	GO:0004362: glutathione-disulfide reductase activity	3.51E-04
19	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.51E-04
20	GO:0004565: beta-galactosidase activity	3.67E-04
21	GO:0008266: poly(U) RNA binding	4.15E-04
22	GO:0005528: FK506 binding	5.74E-04
23	GO:0004751: ribose-5-phosphate isomerase activity	5.75E-04
24	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.99E-04
25	GO:0016851: magnesium chelatase activity	8.23E-04
26	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	8.23E-04
27	GO:0022891: substrate-specific transmembrane transporter activity	8.23E-04
28	GO:0001872: (1->3)-beta-D-glucan binding	8.23E-04
29	GO:0004506: squalene monooxygenase activity	1.09E-03
30	GO:0043495: protein anchor	1.09E-03
31	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.09E-03
32	GO:0010011: auxin binding	1.09E-03
33	GO:0004045: aminoacyl-tRNA hydrolase activity	1.09E-03
34	GO:0016846: carbon-sulfur lyase activity	1.38E-03
35	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.52E-03
36	GO:0035673: oligopeptide transmembrane transporter activity	1.70E-03
37	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.70E-03
38	GO:0042578: phosphoric ester hydrolase activity	1.70E-03
39	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.03E-03
40	GO:0016168: chlorophyll binding	2.07E-03
41	GO:0043022: ribosome binding	2.77E-03
42	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.98E-03
43	GO:0042802: identical protein binding	2.98E-03
44	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.58E-03
45	GO:0016207: 4-coumarate-CoA ligase activity	3.58E-03
46	GO:0008047: enzyme activator activity	4.46E-03
47	GO:0015198: oligopeptide transporter activity	5.41E-03
48	GO:0004022: alcohol dehydrogenase (NAD) activity	5.91E-03
49	GO:0031072: heat shock protein binding	5.91E-03
50	GO:0009982: pseudouridine synthase activity	5.91E-03
51	GO:0051119: sugar transmembrane transporter activity	6.95E-03
52	GO:0003714: transcription corepressor activity	8.05E-03
53	GO:0004857: enzyme inhibitor activity	8.05E-03
54	GO:0015079: potassium ion transmembrane transporter activity	8.63E-03
55	GO:0043424: protein histidine kinase binding	8.63E-03
56	GO:0004176: ATP-dependent peptidase activity	9.22E-03
57	GO:0033612: receptor serine/threonine kinase binding	9.22E-03
58	GO:0016760: cellulose synthase (UDP-forming) activity	1.04E-02
59	GO:0003756: protein disulfide isomerase activity	1.11E-02
60	GO:0047134: protein-disulfide reductase activity	1.17E-02
61	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.28E-02
62	GO:0050662: coenzyme binding	1.37E-02
63	GO:0004791: thioredoxin-disulfide reductase activity	1.37E-02
64	GO:0019901: protein kinase binding	1.44E-02
65	GO:0005515: protein binding	1.54E-02
66	GO:0004518: nuclease activity	1.59E-02
67	GO:0000156: phosphorelay response regulator activity	1.66E-02
68	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.66E-02
69	GO:0016759: cellulose synthase activity	1.74E-02
70	GO:0015250: water channel activity	1.97E-02
71	GO:0003729: mRNA binding	2.09E-02
72	GO:0016788: hydrolase activity, acting on ester bonds	2.17E-02
73	GO:0030247: polysaccharide binding	2.21E-02
74	GO:0050660: flavin adenine dinucleotide binding	2.46E-02
75	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.55E-02
76	GO:0003746: translation elongation factor activity	2.81E-02
77	GO:0050661: NADP binding	3.09E-02
78	GO:0043621: protein self-association	3.56E-02
79	GO:0031625: ubiquitin protein ligase binding	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009507: chloroplast	3.58E-25
3	GO:0009534: chloroplast thylakoid	3.84E-13
4	GO:0009570: chloroplast stroma	5.70E-11
5	GO:0009535: chloroplast thylakoid membrane	2.26E-08
6	GO:0009543: chloroplast thylakoid lumen	3.48E-08
7	GO:0009941: chloroplast envelope	1.46E-06
8	GO:0009579: thylakoid	4.23E-05
9	GO:0009515: granal stacked thylakoid	1.54E-04
10	GO:0031361: integral component of thylakoid membrane	1.54E-04
11	GO:0010287: plastoglobule	1.83E-04
12	GO:0031977: thylakoid lumen	4.44E-04
13	GO:0010007: magnesium chelatase complex	5.75E-04
14	GO:0009509: chromoplast	5.75E-04
15	GO:0033281: TAT protein transport complex	5.75E-04
16	GO:0009654: photosystem II oxygen evolving complex	6.32E-04
17	GO:0009523: photosystem II	1.28E-03
18	GO:0019898: extrinsic component of membrane	1.28E-03
19	GO:0009533: chloroplast stromal thylakoid	2.39E-03
20	GO:0019005: SCF ubiquitin ligase complex	2.54E-03
21	GO:0008180: COP9 signalosome	3.58E-03
22	GO:0055028: cortical microtubule	4.46E-03
23	GO:0031969: chloroplast membrane	5.03E-03
24	GO:0032040: small-subunit processome	5.41E-03
25	GO:0030095: chloroplast photosystem II	6.42E-03
26	GO:0042651: thylakoid membrane	8.63E-03
27	GO:0005623: cell	1.02E-02
28	GO:0030529: intracellular ribonucleoprotein complex	1.97E-02
29	GO:0000151: ubiquitin ligase complex	2.38E-02
30	GO:0016021: integral component of membrane	2.82E-02
31	GO:0000502: proteasome complex	4.17E-02