Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G31800

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
2GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0042820: vitamin B6 catabolic process0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0009106: lipoate metabolic process0.00E+00
8GO:0006573: valine metabolic process0.00E+00
9GO:0090042: tubulin deacetylation0.00E+00
10GO:0008298: intracellular mRNA localization0.00E+00
11GO:0070125: mitochondrial translational elongation0.00E+00
12GO:0009249: protein lipoylation0.00E+00
13GO:0009658: chloroplast organization8.78E-10
14GO:0009773: photosynthetic electron transport in photosystem I1.72E-08
15GO:0019253: reductive pentose-phosphate cycle5.61E-08
16GO:0019464: glycine decarboxylation via glycine cleavage system6.41E-07
17GO:0009853: photorespiration9.66E-07
18GO:0009735: response to cytokinin2.32E-06
19GO:0030388: fructose 1,6-bisphosphate metabolic process5.51E-06
20GO:0015979: photosynthesis9.21E-06
21GO:0006810: transport1.13E-05
22GO:0006000: fructose metabolic process1.94E-05
23GO:0016117: carotenoid biosynthetic process2.06E-05
24GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.29E-05
25GO:0018119: peptidyl-cysteine S-nitrosylation5.04E-05
26GO:0006546: glycine catabolic process7.62E-05
27GO:0009902: chloroplast relocation7.62E-05
28GO:0019676: ammonia assimilation cycle7.62E-05
29GO:0009767: photosynthetic electron transport chain7.71E-05
30GO:0016120: carotene biosynthetic process1.19E-04
31GO:0009409: response to cold1.67E-04
32GO:0061077: chaperone-mediated protein folding2.01E-04
33GO:0042026: protein refolding2.33E-04
34GO:0009854: oxidative photosynthetic carbon pathway2.33E-04
35GO:0010196: nonphotochemical quenching3.02E-04
36GO:0009443: pyridoxal 5'-phosphate salvage3.50E-04
37GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.50E-04
38GO:0010362: negative regulation of anion channel activity by blue light3.50E-04
39GO:0006438: valyl-tRNA aminoacylation3.50E-04
40GO:0006551: leucine metabolic process3.50E-04
41GO:0048564: photosystem I assembly3.80E-04
42GO:0006002: fructose 6-phosphate metabolic process4.65E-04
43GO:0071482: cellular response to light stimulus4.65E-04
44GO:0097054: L-glutamate biosynthetic process7.62E-04
45GO:0080183: response to photooxidative stress7.62E-04
46GO:0010275: NAD(P)H dehydrogenase complex assembly7.62E-04
47GO:0046686: response to cadmium ion8.23E-04
48GO:0019684: photosynthesis, light reaction8.86E-04
49GO:0006094: gluconeogenesis1.14E-03
50GO:0005986: sucrose biosynthetic process1.14E-03
51GO:0018298: protein-chromophore linkage1.16E-03
52GO:0000913: preprophase band assembly1.23E-03
53GO:0031022: nuclear migration along microfilament1.23E-03
54GO:0006518: peptide metabolic process1.23E-03
55GO:0006696: ergosterol biosynthetic process1.23E-03
56GO:2001295: malonyl-CoA biosynthetic process1.23E-03
57GO:0090506: axillary shoot meristem initiation1.23E-03
58GO:0010207: photosystem II assembly1.29E-03
59GO:0010020: chloroplast fission1.29E-03
60GO:0051085: chaperone mediated protein folding requiring cofactor1.78E-03
61GO:0006537: glutamate biosynthetic process1.78E-03
62GO:0009944: polarity specification of adaxial/abaxial axis1.78E-03
63GO:0010731: protein glutathionylation1.78E-03
64GO:0009855: determination of bilateral symmetry1.78E-03
65GO:0043572: plastid fission1.78E-03
66GO:0016556: mRNA modification1.78E-03
67GO:2001141: regulation of RNA biosynthetic process1.78E-03
68GO:0009768: photosynthesis, light harvesting in photosystem I1.96E-03
69GO:0007623: circadian rhythm2.06E-03
70GO:0009744: response to sucrose2.15E-03
71GO:0016226: iron-sulfur cluster assembly2.36E-03
72GO:0006730: one-carbon metabolic process2.36E-03
73GO:0080092: regulation of pollen tube growth2.36E-03
74GO:0009765: photosynthesis, light harvesting2.38E-03
75GO:2000122: negative regulation of stomatal complex development2.38E-03
76GO:0045727: positive regulation of translation2.38E-03
77GO:0010037: response to carbon dioxide2.38E-03
78GO:0006542: glutamine biosynthetic process2.38E-03
79GO:0015976: carbon utilization2.38E-03
80GO:0006564: L-serine biosynthetic process3.05E-03
81GO:0009904: chloroplast accumulation movement3.05E-03
82GO:0006544: glycine metabolic process3.05E-03
83GO:0006656: phosphatidylcholine biosynthetic process3.05E-03
84GO:0010236: plastoquinone biosynthetic process3.05E-03
85GO:0043097: pyrimidine nucleoside salvage3.05E-03
86GO:0009107: lipoate biosynthetic process3.05E-03
87GO:1902183: regulation of shoot apical meristem development3.05E-03
88GO:0016123: xanthophyll biosynthetic process3.05E-03
89GO:0042631: cellular response to water deprivation3.27E-03
90GO:0070814: hydrogen sulfide biosynthetic process3.76E-03
91GO:0010190: cytochrome b6f complex assembly3.76E-03
92GO:0006206: pyrimidine nucleobase metabolic process3.76E-03
93GO:0032973: amino acid export3.76E-03
94GO:0006563: L-serine metabolic process3.76E-03
95GO:0042549: photosystem II stabilization3.76E-03
96GO:0009955: adaxial/abaxial pattern specification4.54E-03
97GO:0010014: meristem initiation4.54E-03
98GO:0080060: integument development4.54E-03
99GO:0010067: procambium histogenesis4.54E-03
100GO:0009082: branched-chain amino acid biosynthetic process4.54E-03
101GO:0006458: 'de novo' protein folding4.54E-03
102GO:0017148: negative regulation of translation4.54E-03
103GO:0009099: valine biosynthetic process4.54E-03
104GO:0009903: chloroplast avoidance movement4.54E-03
105GO:0007264: small GTPase mediated signal transduction4.65E-03
106GO:0043090: amino acid import5.36E-03
107GO:0009645: response to low light intensity stimulus5.36E-03
108GO:0046777: protein autophosphorylation6.16E-03
109GO:0008610: lipid biosynthetic process6.22E-03
110GO:0009704: de-etiolation6.22E-03
111GO:0016559: peroxisome fission6.22E-03
112GO:0009416: response to light stimulus7.10E-03
113GO:0006075: (1->3)-beta-D-glucan biosynthetic process7.14E-03
114GO:0009657: plastid organization7.14E-03
115GO:0009097: isoleucine biosynthetic process7.14E-03
116GO:0032544: plastid translation7.14E-03
117GO:0017004: cytochrome complex assembly7.14E-03
118GO:0010206: photosystem II repair8.10E-03
119GO:0080144: amino acid homeostasis8.10E-03
120GO:2000024: regulation of leaf development8.10E-03
121GO:0000902: cell morphogenesis8.10E-03
122GO:0042742: defense response to bacterium8.13E-03
123GO:0030244: cellulose biosynthetic process8.23E-03
124GO:0000160: phosphorelay signal transduction system8.66E-03
125GO:0006633: fatty acid biosynthetic process8.79E-03
126GO:0009638: phototropism9.10E-03
127GO:0035999: tetrahydrofolate interconversion9.10E-03
128GO:1900865: chloroplast RNA modification9.10E-03
129GO:0009970: cellular response to sulfate starvation1.01E-02
130GO:0009870: defense response signaling pathway, resistance gene-dependent1.01E-02
131GO:0000103: sulfate assimilation1.01E-02
132GO:0010192: mucilage biosynthetic process1.01E-02
133GO:0009637: response to blue light1.05E-02
134GO:0010072: primary shoot apical meristem specification1.12E-02
135GO:0009089: lysine biosynthetic process via diaminopimelate1.12E-02
136GO:0006352: DNA-templated transcription, initiation1.12E-02
137GO:0000272: polysaccharide catabolic process1.12E-02
138GO:0006415: translational termination1.12E-02
139GO:0045037: protein import into chloroplast stroma1.24E-02
140GO:0055114: oxidation-reduction process1.25E-02
141GO:0006006: glucose metabolic process1.35E-02
142GO:0010223: secondary shoot formation1.48E-02
143GO:0009636: response to toxic substance1.52E-02
144GO:0007031: peroxisome organization1.60E-02
145GO:0042343: indole glucosinolate metabolic process1.60E-02
146GO:0005985: sucrose metabolic process1.60E-02
147GO:0090351: seedling development1.60E-02
148GO:0006636: unsaturated fatty acid biosynthetic process1.73E-02
149GO:0009833: plant-type primary cell wall biogenesis1.73E-02
150GO:0006813: potassium ion transport1.83E-02
151GO:0016575: histone deacetylation2.00E-02
152GO:0006418: tRNA aminoacylation for protein translation2.00E-02
153GO:0007017: microtubule-based process2.00E-02
154GO:0098542: defense response to other organism2.13E-02
155GO:0006096: glycolytic process2.16E-02
156GO:0007005: mitochondrion organization2.28E-02
157GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.37E-02
158GO:0001944: vasculature development2.42E-02
159GO:0010089: xylem development2.57E-02
160GO:0010087: phloem or xylem histogenesis2.88E-02
161GO:0010118: stomatal movement2.88E-02
162GO:0008360: regulation of cell shape3.04E-02
163GO:0015986: ATP synthesis coupled proton transport3.20E-02
164GO:0007018: microtubule-based movement3.20E-02
165GO:0006814: sodium ion transport3.20E-02
166GO:0009791: post-embryonic development3.36E-02
167GO:0019252: starch biosynthetic process3.36E-02
168GO:0080156: mitochondrial mRNA modification3.53E-02
169GO:0010583: response to cyclopentenone3.70E-02
170GO:0016032: viral process3.70E-02
171GO:0010090: trichome morphogenesis3.87E-02
172GO:0009793: embryo development ending in seed dormancy3.98E-02
173GO:0006413: translational initiation4.18E-02
174GO:0010286: heat acclimation4.22E-02
175GO:0071805: potassium ion transmembrane transport4.22E-02
176GO:0000910: cytokinesis4.40E-02
177GO:0016126: sterol biosynthetic process4.58E-02
178GO:0010027: thylakoid membrane organization4.58E-02
179GO:0042128: nitrate assimilation4.95E-02
180GO:0009627: systemic acquired resistance4.95E-02
RankGO TermAdjusted P value
1GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0008887: glycerate kinase activity0.00E+00
4GO:0050613: delta14-sterol reductase activity0.00E+00
5GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
6GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
7GO:0051721: protein phosphatase 2A binding0.00E+00
8GO:0043014: alpha-tubulin binding0.00E+00
9GO:0042903: tubulin deacetylase activity0.00E+00
10GO:0008974: phosphoribulokinase activity0.00E+00
11GO:0045435: lycopene epsilon cyclase activity0.00E+00
12GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
13GO:0046905: phytoene synthase activity0.00E+00
14GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
15GO:0008465: glycerate dehydrogenase activity0.00E+00
16GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
17GO:0051738: xanthophyll binding0.00E+00
18GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
19GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
20GO:0016719: carotene 7,8-desaturase activity0.00E+00
21GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
22GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.51E-06
23GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.51E-06
24GO:0004033: aldo-keto reductase (NADP) activity1.16E-05
25GO:0004375: glycine dehydrogenase (decarboxylating) activity4.29E-05
26GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor7.62E-05
27GO:0031072: heat shock protein binding7.71E-05
28GO:0051082: unfolded protein binding1.42E-04
29GO:0005528: FK506 binding1.52E-04
30GO:0004222: metalloendopeptidase activity1.69E-04
31GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.33E-04
32GO:0009496: plastoquinol--plastocyanin reductase activity3.50E-04
33GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.50E-04
34GO:0003984: acetolactate synthase activity3.50E-04
35GO:0003867: 4-aminobutyrate transaminase activity3.50E-04
36GO:0051996: squalene synthase activity3.50E-04
37GO:0004832: valine-tRNA ligase activity3.50E-04
38GO:0010313: phytochrome binding3.50E-04
39GO:0016041: glutamate synthase (ferredoxin) activity3.50E-04
40GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.62E-04
41GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.62E-04
42GO:0000234: phosphoethanolamine N-methyltransferase activity7.62E-04
43GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.62E-04
44GO:0008967: phosphoglycolate phosphatase activity7.62E-04
45GO:0017118: lipoyltransferase activity7.62E-04
46GO:0042389: omega-3 fatty acid desaturase activity7.62E-04
47GO:0004618: phosphoglycerate kinase activity7.62E-04
48GO:0010297: heteropolysaccharide binding7.62E-04
49GO:0004617: phosphoglycerate dehydrogenase activity7.62E-04
50GO:0016415: octanoyltransferase activity7.62E-04
51GO:0004047: aminomethyltransferase activity7.62E-04
52GO:0016597: amino acid binding7.73E-04
53GO:0005089: Rho guanyl-nucleotide exchange factor activity8.86E-04
54GO:0044183: protein binding involved in protein folding8.86E-04
55GO:0016168: chlorophyll binding8.91E-04
56GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.23E-03
57GO:0032947: protein complex scaffold1.23E-03
58GO:0004148: dihydrolipoyl dehydrogenase activity1.23E-03
59GO:0004075: biotin carboxylase activity1.23E-03
60GO:0030267: glyoxylate reductase (NADP) activity1.23E-03
61GO:0004781: sulfate adenylyltransferase (ATP) activity1.23E-03
62GO:0070402: NADPH binding1.23E-03
63GO:0008266: poly(U) RNA binding1.29E-03
64GO:0031409: pigment binding1.60E-03
65GO:0048027: mRNA 5'-UTR binding1.78E-03
66GO:0048487: beta-tubulin binding1.78E-03
67GO:0016149: translation release factor activity, codon specific1.78E-03
68GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.78E-03
69GO:0009882: blue light photoreceptor activity1.78E-03
70GO:0051536: iron-sulfur cluster binding1.78E-03
71GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.78E-03
72GO:0008508: bile acid:sodium symporter activity1.78E-03
73GO:0015079: potassium ion transmembrane transporter activity1.96E-03
74GO:0004176: ATP-dependent peptidase activity2.16E-03
75GO:0016987: sigma factor activity2.38E-03
76GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.38E-03
77GO:0001053: plastid sigma factor activity2.38E-03
78GO:0051537: 2 iron, 2 sulfur cluster binding2.38E-03
79GO:0005198: structural molecule activity2.50E-03
80GO:0003924: GTPase activity2.60E-03
81GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.62E-03
82GO:0051287: NAD binding2.74E-03
83GO:0008374: O-acyltransferase activity3.05E-03
84GO:0004372: glycine hydroxymethyltransferase activity3.05E-03
85GO:0051538: 3 iron, 4 sulfur cluster binding3.05E-03
86GO:0004356: glutamate-ammonia ligase activity3.05E-03
87GO:0003989: acetyl-CoA carboxylase activity3.05E-03
88GO:0042578: phosphoric ester hydrolase activity3.76E-03
89GO:0080030: methyl indole-3-acetate esterase activity3.76E-03
90GO:0048038: quinone binding4.36E-03
91GO:0004849: uridine kinase activity4.54E-03
92GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.54E-03
93GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.54E-03
94GO:0043295: glutathione binding5.36E-03
95GO:0008237: metallopeptidase activity5.61E-03
96GO:0019843: rRNA binding6.57E-03
97GO:0005509: calcium ion binding6.94E-03
98GO:0015078: hydrogen ion transmembrane transporter activity7.14E-03
99GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.14E-03
100GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.14E-03
101GO:0008135: translation factor activity, RNA binding7.14E-03
102GO:0003843: 1,3-beta-D-glucan synthase activity7.14E-03
103GO:0005524: ATP binding7.83E-03
104GO:0003747: translation release factor activity8.10E-03
105GO:0003746: translation elongation factor activity1.05E-02
106GO:0015386: potassium:proton antiporter activity1.12E-02
107GO:0004364: glutathione transferase activity1.30E-02
108GO:0042802: identical protein binding1.35E-02
109GO:0004565: beta-galactosidase activity1.35E-02
110GO:0008081: phosphoric diester hydrolase activity1.35E-02
111GO:0004089: carbonate dehydratase activity1.35E-02
112GO:0000155: phosphorelay sensor kinase activity1.35E-02
113GO:0005525: GTP binding1.68E-02
114GO:0005515: protein binding1.77E-02
115GO:0004407: histone deacetylase activity1.86E-02
116GO:0043424: protein histidine kinase binding2.00E-02
117GO:0008324: cation transmembrane transporter activity2.00E-02
118GO:0033612: receptor serine/threonine kinase binding2.13E-02
119GO:0046872: metal ion binding2.33E-02
120GO:0016760: cellulose synthase (UDP-forming) activity2.42E-02
121GO:0022891: substrate-specific transmembrane transporter activity2.42E-02
122GO:0022857: transmembrane transporter activity2.45E-02
123GO:0003756: protein disulfide isomerase activity2.57E-02
124GO:0005102: receptor binding2.72E-02
125GO:0004812: aminoacyl-tRNA ligase activity2.72E-02
126GO:0003824: catalytic activity2.80E-02
127GO:0050662: coenzyme binding3.20E-02
128GO:0010181: FMN binding3.20E-02
129GO:0016787: hydrolase activity3.46E-02
130GO:0004518: nuclease activity3.70E-02
131GO:0000156: phosphorelay response regulator activity3.87E-02
132GO:0016759: cellulose synthase activity4.04E-02
133GO:0008483: transaminase activity4.22E-02
134GO:0005200: structural constituent of cytoskeleton4.22E-02
135GO:0009931: calcium-dependent protein serine/threonine kinase activity4.95E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0005948: acetolactate synthase complex0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0009507: chloroplast3.90E-69
5GO:0009941: chloroplast envelope6.30E-34
6GO:0009535: chloroplast thylakoid membrane1.05E-32
7GO:0009570: chloroplast stroma1.19E-27
8GO:0009579: thylakoid1.40E-16
9GO:0009543: chloroplast thylakoid lumen1.35E-11
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.78E-11
11GO:0010319: stromule8.28E-11
12GO:0009534: chloroplast thylakoid9.26E-11
13GO:0009654: photosystem II oxygen evolving complex3.58E-09
14GO:0048046: apoplast3.82E-07
15GO:0019898: extrinsic component of membrane1.59E-06
16GO:0031977: thylakoid lumen1.66E-06
17GO:0030095: chloroplast photosystem II3.04E-06
18GO:0031969: chloroplast membrane5.74E-06
19GO:0010287: plastoglobule2.33E-05
20GO:0005960: glycine cleavage complex4.29E-05
21GO:0009706: chloroplast inner membrane1.42E-04
22GO:0016020: membrane2.34E-04
23GO:0005759: mitochondrial matrix3.46E-04
24GO:0009782: photosystem I antenna complex3.50E-04
25GO:0042170: plastid membrane7.62E-04
26GO:0000427: plastid-encoded plastid RNA polymerase complex7.62E-04
27GO:0009509: chromoplast1.23E-03
28GO:0030076: light-harvesting complex1.44E-03
29GO:0042651: thylakoid membrane1.96E-03
30GO:0009517: PSII associated light-harvesting complex II2.38E-03
31GO:0009512: cytochrome b6f complex3.05E-03
32GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.76E-03
33GO:0009523: photosystem II4.07E-03
34GO:0005778: peroxisomal membrane5.61E-03
35GO:0005623: cell6.80E-03
36GO:0005779: integral component of peroxisomal membrane7.14E-03
37GO:0009539: photosystem II reaction center7.14E-03
38GO:0000148: 1,3-beta-D-glucan synthase complex7.14E-03
39GO:0045298: tubulin complex8.10E-03
40GO:0016324: apical plasma membrane1.01E-02
41GO:0005819: spindle1.14E-02
42GO:0000311: plastid large ribosomal subunit1.24E-02
43GO:0009508: plastid chromosome1.35E-02
44GO:0016021: integral component of membrane1.42E-02
45GO:0030176: integral component of endoplasmic reticulum membrane1.60E-02
46GO:0009532: plastid stroma2.13E-02
47GO:0005874: microtubule2.17E-02
48GO:0022626: cytosolic ribosome2.23E-02
49GO:0005871: kinesin complex2.72E-02
50GO:0009522: photosystem I3.20E-02
51GO:0009536: plastid3.36E-02
52GO:0009504: cell plate3.36E-02
53GO:0009524: phragmoplast3.43E-02
54GO:0005694: chromosome3.70E-02
55GO:0009295: nucleoid4.22E-02
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Gene type



Gene DE type