Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G31650

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042820: vitamin B6 catabolic process0.00E+00
2GO:0042821: pyridoxal biosynthetic process0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
5GO:0009106: lipoate metabolic process0.00E+00
6GO:0090393: sepal giant cell development0.00E+00
7GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
8GO:0070125: mitochondrial translational elongation0.00E+00
9GO:0009249: protein lipoylation0.00E+00
10GO:0015822: ornithine transport0.00E+00
11GO:0051503: adenine nucleotide transport0.00E+00
12GO:0019253: reductive pentose-phosphate cycle2.99E-08
13GO:0019464: glycine decarboxylation via glycine cleavage system4.23E-07
14GO:0018119: peptidyl-cysteine S-nitrosylation7.27E-07
15GO:0009658: chloroplast organization1.09E-06
16GO:0006810: transport3.65E-06
17GO:0010275: NAD(P)H dehydrogenase complex assembly4.08E-06
18GO:0046686: response to cadmium ion4.86E-06
19GO:0009853: photorespiration1.05E-05
20GO:0071482: cellular response to light stimulus1.13E-05
21GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.26E-05
22GO:0009767: photosynthetic electron transport chain5.43E-05
23GO:0006096: glycolytic process5.82E-05
24GO:0006546: glycine catabolic process5.85E-05
25GO:0010190: cytochrome b6f complex assembly1.34E-04
26GO:0042549: photosystem II stabilization1.34E-04
27GO:0042026: protein refolding1.83E-04
28GO:0016117: carotenoid biosynthetic process2.37E-04
29GO:0009735: response to cytokinin2.66E-04
30GO:0006438: valyl-tRNA aminoacylation2.99E-04
31GO:0071370: cellular response to gibberellin stimulus2.99E-04
32GO:0010480: microsporocyte differentiation2.99E-04
33GO:0080093: regulation of photorespiration2.99E-04
34GO:0000066: mitochondrial ornithine transport2.99E-04
35GO:0031998: regulation of fatty acid beta-oxidation2.99E-04
36GO:0009443: pyridoxal 5'-phosphate salvage2.99E-04
37GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.99E-04
38GO:0009409: response to cold3.00E-04
39GO:0052543: callose deposition in cell wall3.02E-04
40GO:0048564: photosystem I assembly3.02E-04
41GO:0009657: plastid organization3.71E-04
42GO:1900865: chloroplast RNA modification5.28E-04
43GO:1902326: positive regulation of chlorophyll biosynthetic process6.55E-04
44GO:1904143: positive regulation of carotenoid biosynthetic process6.55E-04
45GO:0080183: response to photooxidative stress6.55E-04
46GO:0030388: fructose 1,6-bisphosphate metabolic process6.55E-04
47GO:0009773: photosynthetic electron transport in photosystem I7.11E-04
48GO:0006352: DNA-templated transcription, initiation7.11E-04
49GO:0006094: gluconeogenesis9.19E-04
50GO:0005986: sucrose biosynthetic process9.19E-04
51GO:0010207: photosystem II assembly1.03E-03
52GO:0006000: fructose metabolic process1.06E-03
53GO:0006696: ergosterol biosynthetic process1.06E-03
54GO:0005977: glycogen metabolic process1.06E-03
55GO:0006011: UDP-glucose metabolic process1.06E-03
56GO:0015979: photosynthesis1.10E-03
57GO:0090351: seedling development1.15E-03
58GO:0033014: tetrapyrrole biosynthetic process1.52E-03
59GO:0046902: regulation of mitochondrial membrane permeability1.52E-03
60GO:0010731: protein glutathionylation1.52E-03
61GO:0043572: plastid fission1.52E-03
62GO:0016556: mRNA modification1.52E-03
63GO:2001141: regulation of RNA biosynthetic process1.52E-03
64GO:0032877: positive regulation of DNA endoreduplication1.52E-03
65GO:0051085: chaperone mediated protein folding requiring cofactor1.52E-03
66GO:0010239: chloroplast mRNA processing1.52E-03
67GO:0009800: cinnamic acid biosynthetic process1.52E-03
68GO:0009052: pentose-phosphate shunt, non-oxidative branch1.52E-03
69GO:0061077: chaperone-mediated protein folding1.72E-03
70GO:0009636: response to toxic substance1.86E-03
71GO:0006730: one-carbon metabolic process1.88E-03
72GO:0045727: positive regulation of translation2.04E-03
73GO:0071483: cellular response to blue light2.04E-03
74GO:0009902: chloroplast relocation2.04E-03
75GO:0010037: response to carbon dioxide2.04E-03
76GO:0006542: glutamine biosynthetic process2.04E-03
77GO:0019676: ammonia assimilation cycle2.04E-03
78GO:0015976: carbon utilization2.04E-03
79GO:2000122: negative regulation of stomatal complex development2.04E-03
80GO:0010236: plastoquinone biosynthetic process2.61E-03
81GO:0006544: glycine metabolic process2.61E-03
82GO:0043097: pyrimidine nucleoside salvage2.61E-03
83GO:0006097: glyoxylate cycle2.61E-03
84GO:0006461: protein complex assembly2.61E-03
85GO:0009107: lipoate biosynthetic process2.61E-03
86GO:1902183: regulation of shoot apical meristem development2.61E-03
87GO:0016123: xanthophyll biosynthetic process2.61E-03
88GO:0042631: cellular response to water deprivation2.61E-03
89GO:0016554: cytidine to uridine editing3.22E-03
90GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.22E-03
91GO:0006559: L-phenylalanine catabolic process3.22E-03
92GO:0006206: pyrimidine nucleobase metabolic process3.22E-03
93GO:0010942: positive regulation of cell death3.22E-03
94GO:0006563: L-serine metabolic process3.22E-03
95GO:0070814: hydrogen sulfide biosynthetic process3.22E-03
96GO:0006458: 'de novo' protein folding3.87E-03
97GO:0017148: negative regulation of translation3.87E-03
98GO:1901259: chloroplast rRNA processing3.87E-03
99GO:0009854: oxidative photosynthetic carbon pathway3.87E-03
100GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.87E-03
101GO:0048437: floral organ development4.57E-03
102GO:0010196: nonphotochemical quenching4.57E-03
103GO:0009645: response to low light intensity stimulus4.57E-03
104GO:0009416: response to light stimulus4.73E-03
105GO:0042742: defense response to bacterium5.15E-03
106GO:0008610: lipid biosynthetic process5.30E-03
107GO:0009704: de-etiolation5.30E-03
108GO:0016559: peroxisome fission5.30E-03
109GO:0010100: negative regulation of photomorphogenesis6.08E-03
110GO:0032544: plastid translation6.08E-03
111GO:0017004: cytochrome complex assembly6.08E-03
112GO:0006002: fructose 6-phosphate metabolic process6.08E-03
113GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.08E-03
114GO:0010206: photosystem II repair6.89E-03
115GO:0006098: pentose-phosphate shunt6.89E-03
116GO:2000024: regulation of leaf development6.89E-03
117GO:0006783: heme biosynthetic process6.89E-03
118GO:0000373: Group II intron splicing6.89E-03
119GO:0000902: cell morphogenesis6.89E-03
120GO:0009407: toxin catabolic process7.20E-03
121GO:0007623: circadian rhythm7.38E-03
122GO:0006457: protein folding7.43E-03
123GO:0006779: porphyrin-containing compound biosynthetic process7.74E-03
124GO:0035999: tetrahydrofolate interconversion7.74E-03
125GO:0009970: cellular response to sulfate starvation8.62E-03
126GO:0006535: cysteine biosynthetic process from serine8.62E-03
127GO:0000103: sulfate assimilation8.62E-03
128GO:0045036: protein targeting to chloroplast8.62E-03
129GO:0010192: mucilage biosynthetic process8.62E-03
130GO:0006839: mitochondrial transport9.45E-03
131GO:0000272: polysaccharide catabolic process9.55E-03
132GO:0006415: translational termination9.55E-03
133GO:0048229: gametophyte development9.55E-03
134GO:0019684: photosynthesis, light reaction9.55E-03
135GO:0045037: protein import into chloroplast stroma1.05E-02
136GO:0009744: response to sucrose1.07E-02
137GO:0006108: malate metabolic process1.15E-02
138GO:0006006: glucose metabolic process1.15E-02
139GO:0010075: regulation of meristem growth1.15E-02
140GO:0010020: chloroplast fission1.25E-02
141GO:0009934: regulation of meristem structural organization1.25E-02
142GO:0042343: indole glucosinolate metabolic process1.36E-02
143GO:0005985: sucrose metabolic process1.36E-02
144GO:0007031: peroxisome organization1.36E-02
145GO:0006636: unsaturated fatty acid biosynthetic process1.47E-02
146GO:0009833: plant-type primary cell wall biogenesis1.47E-02
147GO:0019344: cysteine biosynthetic process1.58E-02
148GO:0009944: polarity specification of adaxial/abaxial axis1.58E-02
149GO:0006418: tRNA aminoacylation for protein translation1.69E-02
150GO:0009768: photosynthesis, light harvesting in photosystem I1.69E-02
151GO:0098542: defense response to other organism1.81E-02
152GO:0046777: protein autophosphorylation1.84E-02
153GO:0055114: oxidation-reduction process1.90E-02
154GO:0016226: iron-sulfur cluster assembly1.93E-02
155GO:0007005: mitochondrion organization1.93E-02
156GO:0080092: regulation of pollen tube growth1.93E-02
157GO:0080022: primary root development2.44E-02
158GO:0048653: anther development2.44E-02
159GO:0006520: cellular amino acid metabolic process2.57E-02
160GO:0048868: pollen tube development2.57E-02
161GO:0006342: chromatin silencing2.57E-02
162GO:0009741: response to brassinosteroid2.57E-02
163GO:0008360: regulation of cell shape2.57E-02
164GO:0007059: chromosome segregation2.71E-02
165GO:0009646: response to absence of light2.71E-02
166GO:0009791: post-embryonic development2.85E-02
167GO:0019252: starch biosynthetic process2.85E-02
168GO:0080156: mitochondrial mRNA modification2.99E-02
169GO:0002229: defense response to oomycetes2.99E-02
170GO:0032502: developmental process3.13E-02
171GO:0007264: small GTPase mediated signal transduction3.13E-02
172GO:0010583: response to cyclopentenone3.13E-02
173GO:0010286: heat acclimation3.58E-02
174GO:0071805: potassium ion transmembrane transport3.58E-02
175GO:0051607: defense response to virus3.73E-02
176GO:0001666: response to hypoxia3.88E-02
177GO:0009816: defense response to bacterium, incompatible interaction4.04E-02
178GO:0009627: systemic acquired resistance4.20E-02
179GO:0042128: nitrate assimilation4.20E-02
180GO:0030244: cellulose biosynthetic process4.69E-02
181GO:0009817: defense response to fungus, incompatible interaction4.69E-02
182GO:0018298: protein-chromophore linkage4.69E-02
183GO:0008219: cell death4.69E-02
184GO:0009832: plant-type cell wall biogenesis4.85E-02
RankGO TermAdjusted P value
1GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0008974: phosphoribulokinase activity0.00E+00
6GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
7GO:0004760: serine-pyruvate transaminase activity0.00E+00
8GO:0046905: phytoene synthase activity0.00E+00
9GO:0008465: glycerate dehydrogenase activity0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
12GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
13GO:0050281: serine-glyoxylate transaminase activity0.00E+00
14GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
15GO:0004326: tetrahydrofolylpolyglutamate synthase activity4.08E-06
16GO:0004375: glycine dehydrogenase (decarboxylating) activity3.26E-05
17GO:0016987: sigma factor activity5.85E-05
18GO:0001053: plastid sigma factor activity5.85E-05
19GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.85E-05
20GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.83E-04
21GO:0009496: plastoquinol--plastocyanin reductase activity2.99E-04
22GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.99E-04
23GO:0003867: 4-aminobutyrate transaminase activity2.99E-04
24GO:0004325: ferrochelatase activity2.99E-04
25GO:0004832: valine-tRNA ligase activity2.99E-04
26GO:0051996: squalene synthase activity2.99E-04
27GO:0010313: phytochrome binding2.99E-04
28GO:0030941: chloroplast targeting sequence binding2.99E-04
29GO:0004033: aldo-keto reductase (NADP) activity3.02E-04
30GO:0051082: unfolded protein binding6.34E-04
31GO:0004802: transketolase activity6.55E-04
32GO:0000064: L-ornithine transmembrane transporter activity6.55E-04
33GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.55E-04
34GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.55E-04
35GO:0050017: L-3-cyanoalanine synthase activity6.55E-04
36GO:0008967: phosphoglycolate phosphatase activity6.55E-04
37GO:0010291: carotene beta-ring hydroxylase activity6.55E-04
38GO:0017118: lipoyltransferase activity6.55E-04
39GO:0042389: omega-3 fatty acid desaturase activity6.55E-04
40GO:0004618: phosphoglycerate kinase activity6.55E-04
41GO:0010297: heteropolysaccharide binding6.55E-04
42GO:0016415: octanoyltransferase activity6.55E-04
43GO:0004047: aminomethyltransferase activity6.55E-04
44GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.55E-04
45GO:0044183: protein binding involved in protein folding7.11E-04
46GO:0031072: heat shock protein binding9.19E-04
47GO:0008266: poly(U) RNA binding1.03E-03
48GO:0070330: aromatase activity1.06E-03
49GO:0045548: phenylalanine ammonia-lyase activity1.06E-03
50GO:0050307: sucrose-phosphate phosphatase activity1.06E-03
51GO:0032947: protein complex scaffold1.06E-03
52GO:0004148: dihydrolipoyl dehydrogenase activity1.06E-03
53GO:0004751: ribose-5-phosphate isomerase activity1.06E-03
54GO:0030267: glyoxylate reductase (NADP) activity1.06E-03
55GO:0004781: sulfate adenylyltransferase (ATP) activity1.06E-03
56GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.06E-03
57GO:0070402: NADPH binding1.06E-03
58GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.06E-03
59GO:0005528: FK506 binding1.42E-03
60GO:0048027: mRNA 5'-UTR binding1.52E-03
61GO:0016149: translation release factor activity, codon specific1.52E-03
62GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.52E-03
63GO:0001872: (1->3)-beta-D-glucan binding1.52E-03
64GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.52E-03
65GO:0004364: glutathione transferase activity1.53E-03
66GO:0015079: potassium ion transmembrane transporter activity1.56E-03
67GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.95E-03
68GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.04E-03
69GO:0051861: glycolipid binding2.04E-03
70GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.04E-03
71GO:0008453: alanine-glyoxylate transaminase activity2.04E-03
72GO:0018685: alkane 1-monooxygenase activity2.61E-03
73GO:0005471: ATP:ADP antiporter activity2.61E-03
74GO:0004356: glutamate-ammonia ligase activity2.61E-03
75GO:0008374: O-acyltransferase activity2.61E-03
76GO:0004372: glycine hydroxymethyltransferase activity2.61E-03
77GO:0042578: phosphoric ester hydrolase activity3.22E-03
78GO:0016615: malate dehydrogenase activity3.22E-03
79GO:0080030: methyl indole-3-acetate esterase activity3.22E-03
80GO:0004332: fructose-bisphosphate aldolase activity3.22E-03
81GO:0048038: quinone binding3.46E-03
82GO:0004849: uridine kinase activity3.87E-03
83GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.87E-03
84GO:0030060: L-malate dehydrogenase activity3.87E-03
85GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.87E-03
86GO:0004124: cysteine synthase activity3.87E-03
87GO:0043295: glutathione binding4.57E-03
88GO:0019843: rRNA binding4.89E-03
89GO:0004564: beta-fructofuranosidase activity5.30E-03
90GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.08E-03
91GO:0003843: 1,3-beta-D-glucan synthase activity6.08E-03
92GO:0003747: translation release factor activity6.89E-03
93GO:0004222: metalloendopeptidase activity7.20E-03
94GO:0004575: sucrose alpha-glucosidase activity7.74E-03
95GO:0047617: acyl-CoA hydrolase activity7.74E-03
96GO:0004519: endonuclease activity8.04E-03
97GO:0003746: translation elongation factor activity8.28E-03
98GO:0005089: Rho guanyl-nucleotide exchange factor activity9.55E-03
99GO:0015386: potassium:proton antiporter activity9.55E-03
100GO:0004860: protein kinase inhibitor activity9.55E-03
101GO:0004089: carbonate dehydratase activity1.15E-02
102GO:0051537: 2 iron, 2 sulfur cluster binding1.16E-02
103GO:0005198: structural molecule activity1.20E-02
104GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.25E-02
105GO:0051287: NAD binding1.30E-02
106GO:0005509: calcium ion binding1.40E-02
107GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.45E-02
108GO:0031409: pigment binding1.47E-02
109GO:0051536: iron-sulfur cluster binding1.58E-02
110GO:0005515: protein binding1.62E-02
111GO:0043424: protein histidine kinase binding1.69E-02
112GO:0004176: ATP-dependent peptidase activity1.81E-02
113GO:0033612: receptor serine/threonine kinase binding1.81E-02
114GO:0016760: cellulose synthase (UDP-forming) activity2.05E-02
115GO:0003756: protein disulfide isomerase activity2.18E-02
116GO:0004812: aminoacyl-tRNA ligase activity2.31E-02
117GO:0050662: coenzyme binding2.71E-02
118GO:0019825: oxygen binding2.84E-02
119GO:0019901: protein kinase binding2.85E-02
120GO:0030170: pyridoxal phosphate binding2.87E-02
121GO:0004518: nuclease activity3.13E-02
122GO:0016759: cellulose synthase activity3.42E-02
123GO:0008483: transaminase activity3.58E-02
124GO:0008237: metallopeptidase activity3.58E-02
125GO:0016597: amino acid binding3.73E-02
126GO:0016168: chlorophyll binding4.04E-02
127GO:0009931: calcium-dependent protein serine/threonine kinase activity4.20E-02
128GO:0030247: polysaccharide binding4.36E-02
129GO:0004683: calmodulin-dependent protein kinase activity4.36E-02
130GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.52E-02
131GO:0008236: serine-type peptidase activity4.52E-02
132GO:0005506: iron ion binding4.63E-02
133GO:0015238: drug transmembrane transporter activity4.85E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0042579: microbody0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0009507: chloroplast6.06E-49
5GO:0009535: chloroplast thylakoid membrane1.23E-25
6GO:0009941: chloroplast envelope3.89E-23
7GO:0009570: chloroplast stroma6.17E-20
8GO:0009579: thylakoid1.19E-12
9GO:0009543: chloroplast thylakoid lumen1.04E-10
10GO:0010319: stromule1.55E-09
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.02E-09
12GO:0009534: chloroplast thylakoid3.19E-08
13GO:0009654: photosystem II oxygen evolving complex1.07E-07
14GO:0030095: chloroplast photosystem II1.84E-06
15GO:0048046: apoplast1.24E-05
16GO:0019898: extrinsic component of membrane2.40E-05
17GO:0031969: chloroplast membrane2.44E-05
18GO:0005960: glycine cleavage complex3.26E-05
19GO:0031977: thylakoid lumen1.96E-04
20GO:0005759: mitochondrial matrix2.22E-04
21GO:0009782: photosystem I antenna complex2.99E-04
22GO:0009706: chloroplast inner membrane6.34E-04
23GO:0045254: pyruvate dehydrogenase complex6.55E-04
24GO:0042170: plastid membrane6.55E-04
25GO:0000427: plastid-encoded plastid RNA polymerase complex6.55E-04
26GO:0010287: plastoglobule8.23E-04
27GO:0005775: vacuolar lumen1.52E-03
28GO:0005777: peroxisome1.68E-03
29GO:0009536: plastid2.48E-03
30GO:0055035: plastid thylakoid membrane2.61E-03
31GO:0009512: cytochrome b6f complex2.61E-03
32GO:0009523: photosystem II3.24E-03
33GO:0009295: nucleoid4.45E-03
34GO:0031359: integral component of chloroplast outer membrane4.57E-03
35GO:0009533: chloroplast stromal thylakoid4.57E-03
36GO:0005779: integral component of peroxisomal membrane6.08E-03
37GO:0009539: photosystem II reaction center6.08E-03
38GO:0000148: 1,3-beta-D-glucan synthase complex6.08E-03
39GO:0009707: chloroplast outer membrane6.53E-03
40GO:0016324: apical plasma membrane8.62E-03
41GO:0005765: lysosomal membrane9.55E-03
42GO:0031902: late endosome membrane9.85E-03
43GO:0046658: anchored component of plasma membrane1.06E-02
44GO:0009508: plastid chromosome1.15E-02
45GO:0019013: viral nucleocapsid1.15E-02
46GO:0016020: membrane1.21E-02
47GO:0030076: light-harvesting complex1.36E-02
48GO:0022626: cytosolic ribosome1.58E-02
49GO:0000790: nuclear chromatin2.31E-02
50GO:0005743: mitochondrial inner membrane2.52E-02
51GO:0005623: cell2.65E-02
52GO:0005778: peroxisomal membrane3.58E-02
53GO:0030529: intracellular ribonucleoprotein complex3.88E-02
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Gene type



Gene DE type