Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G30130

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0015822: ornithine transport0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:0042821: pyridoxal biosynthetic process0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0006633: fatty acid biosynthetic process4.73E-06
9GO:0006810: transport1.13E-05
10GO:0007155: cell adhesion1.16E-05
11GO:0016117: carotenoid biosynthetic process2.06E-05
12GO:0009773: photosynthetic electron transport in photosystem I5.04E-05
13GO:0019464: glycine decarboxylation via glycine cleavage system7.62E-05
14GO:0006546: glycine catabolic process7.62E-05
15GO:0016123: xanthophyll biosynthetic process1.19E-04
16GO:0010190: cytochrome b6f complex assembly1.72E-04
17GO:0009635: response to herbicide1.72E-04
18GO:0000066: mitochondrial ornithine transport3.50E-04
19GO:1902458: positive regulation of stomatal opening3.50E-04
20GO:0009443: pyridoxal 5'-phosphate salvage3.50E-04
21GO:1904966: positive regulation of vitamin E biosynthetic process3.50E-04
22GO:0071370: cellular response to gibberellin stimulus3.50E-04
23GO:1904964: positive regulation of phytol biosynthetic process3.50E-04
24GO:0042335: cuticle development3.58E-04
25GO:0015979: photosynthesis3.84E-04
26GO:1903426: regulation of reactive oxygen species biosynthetic process7.62E-04
27GO:0030388: fructose 1,6-bisphosphate metabolic process7.62E-04
28GO:2000123: positive regulation of stomatal complex development7.62E-04
29GO:0010275: NAD(P)H dehydrogenase complex assembly7.62E-04
30GO:1902326: positive regulation of chlorophyll biosynthetic process7.62E-04
31GO:0060919: auxin influx7.62E-04
32GO:0046686: response to cadmium ion8.23E-04
33GO:0000038: very long-chain fatty acid metabolic process8.86E-04
34GO:0019684: photosynthesis, light reaction8.86E-04
35GO:0009658: chloroplast organization8.98E-04
36GO:0045037: protein import into chloroplast stroma1.01E-03
37GO:0006094: gluconeogenesis1.14E-03
38GO:0009767: photosynthetic electron transport chain1.14E-03
39GO:2001295: malonyl-CoA biosynthetic process1.23E-03
40GO:0090506: axillary shoot meristem initiation1.23E-03
41GO:0006000: fructose metabolic process1.23E-03
42GO:0006518: peptide metabolic process1.23E-03
43GO:0006696: ergosterol biosynthetic process1.23E-03
44GO:0010207: photosystem II assembly1.29E-03
45GO:0010020: chloroplast fission1.29E-03
46GO:0006833: water transport1.60E-03
47GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.78E-03
48GO:0010731: protein glutathionylation1.78E-03
49GO:0006424: glutamyl-tRNA aminoacylation1.78E-03
50GO:0016556: mRNA modification1.78E-03
51GO:0043572: plastid fission1.78E-03
52GO:0061077: chaperone-mediated protein folding2.16E-03
53GO:0080092: regulation of pollen tube growth2.36E-03
54GO:0015976: carbon utilization2.38E-03
55GO:0009765: photosynthesis, light harvesting2.38E-03
56GO:2000122: negative regulation of stomatal complex development2.38E-03
57GO:0031122: cytoplasmic microtubule organization2.38E-03
58GO:2000038: regulation of stomatal complex development2.38E-03
59GO:0044206: UMP salvage2.38E-03
60GO:0010037: response to carbon dioxide2.38E-03
61GO:0006461: protein complex assembly3.05E-03
62GO:1902183: regulation of shoot apical meristem development3.05E-03
63GO:0010375: stomatal complex patterning3.05E-03
64GO:0016120: carotene biosynthetic process3.05E-03
65GO:0032543: mitochondrial translation3.05E-03
66GO:0043097: pyrimidine nucleoside salvage3.05E-03
67GO:0010236: plastoquinone biosynthetic process3.05E-03
68GO:0045038: protein import into chloroplast thylakoid membrane3.05E-03
69GO:0034220: ion transmembrane transport3.27E-03
70GO:0055114: oxidation-reduction process3.50E-03
71GO:0042549: photosystem II stabilization3.76E-03
72GO:0016554: cytidine to uridine editing3.76E-03
73GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.76E-03
74GO:0006206: pyrimidine nucleobase metabolic process3.76E-03
75GO:0016132: brassinosteroid biosynthetic process4.36E-03
76GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.54E-03
77GO:0009955: adaxial/abaxial pattern specification4.54E-03
78GO:0010067: procambium histogenesis4.54E-03
79GO:0009082: branched-chain amino acid biosynthetic process4.54E-03
80GO:0017148: negative regulation of translation4.54E-03
81GO:1901259: chloroplast rRNA processing4.54E-03
82GO:0006694: steroid biosynthetic process4.54E-03
83GO:0009099: valine biosynthetic process4.54E-03
84GO:0010583: response to cyclopentenone4.65E-03
85GO:0006401: RNA catabolic process5.36E-03
86GO:0030497: fatty acid elongation5.36E-03
87GO:0006400: tRNA modification5.36E-03
88GO:0007267: cell-cell signaling5.61E-03
89GO:0052543: callose deposition in cell wall6.22E-03
90GO:2000070: regulation of response to water deprivation6.22E-03
91GO:0016126: sterol biosynthetic process6.30E-03
92GO:0010027: thylakoid membrane organization6.30E-03
93GO:0042128: nitrate assimilation7.04E-03
94GO:0009416: response to light stimulus7.10E-03
95GO:0009808: lignin metabolic process7.14E-03
96GO:0006002: fructose 6-phosphate metabolic process7.14E-03
97GO:0015996: chlorophyll catabolic process7.14E-03
98GO:0006075: (1->3)-beta-D-glucan biosynthetic process7.14E-03
99GO:0007186: G-protein coupled receptor signaling pathway7.14E-03
100GO:0009657: plastid organization7.14E-03
101GO:0009097: isoleucine biosynthetic process7.14E-03
102GO:0032544: plastid translation7.14E-03
103GO:0000902: cell morphogenesis8.10E-03
104GO:0006098: pentose-phosphate shunt8.10E-03
105GO:0010206: photosystem II repair8.10E-03
106GO:2000024: regulation of leaf development8.10E-03
107GO:0006754: ATP biosynthetic process8.10E-03
108GO:0071555: cell wall organization8.13E-03
109GO:1900865: chloroplast RNA modification9.10E-03
110GO:0010192: mucilage biosynthetic process1.01E-02
111GO:0019538: protein metabolic process1.01E-02
112GO:0009870: defense response signaling pathway, resistance gene-dependent1.01E-02
113GO:0006535: cysteine biosynthetic process from serine1.01E-02
114GO:0043069: negative regulation of programmed cell death1.01E-02
115GO:0048829: root cap development1.01E-02
116GO:0045036: protein targeting to chloroplast1.01E-02
117GO:0055085: transmembrane transport1.08E-02
118GO:0009089: lysine biosynthetic process via diaminopimelate1.12E-02
119GO:0009073: aromatic amino acid family biosynthetic process1.12E-02
120GO:0018119: peptidyl-cysteine S-nitrosylation1.12E-02
121GO:0006839: mitochondrial transport1.19E-02
122GO:0006631: fatty acid metabolic process1.24E-02
123GO:0015706: nitrate transport1.24E-02
124GO:0009725: response to hormone1.35E-02
125GO:0005986: sucrose biosynthetic process1.35E-02
126GO:0009409: response to cold1.46E-02
127GO:0019253: reductive pentose-phosphate cycle1.48E-02
128GO:0010223: secondary shoot formation1.48E-02
129GO:0009636: response to toxic substance1.52E-02
130GO:0009969: xyloglucan biosynthetic process1.60E-02
131GO:0010167: response to nitrate1.60E-02
132GO:0005985: sucrose metabolic process1.60E-02
133GO:0010025: wax biosynthetic process1.73E-02
134GO:0006636: unsaturated fatty acid biosynthetic process1.73E-02
135GO:0009833: plant-type primary cell wall biogenesis1.73E-02
136GO:0005992: trehalose biosynthetic process1.86E-02
137GO:0019344: cysteine biosynthetic process1.86E-02
138GO:0009116: nucleoside metabolic process1.86E-02
139GO:0009944: polarity specification of adaxial/abaxial axis1.86E-02
140GO:0006857: oligopeptide transport1.96E-02
141GO:0007017: microtubule-based process2.00E-02
142GO:0003333: amino acid transmembrane transport2.13E-02
143GO:0006096: glycolytic process2.16E-02
144GO:0009294: DNA mediated transformation2.42E-02
145GO:0001944: vasculature development2.42E-02
146GO:0010089: xylem development2.57E-02
147GO:0019722: calcium-mediated signaling2.57E-02
148GO:0080022: primary root development2.88E-02
149GO:0010087: phloem or xylem histogenesis2.88E-02
150GO:0008360: regulation of cell shape3.04E-02
151GO:0006520: cellular amino acid metabolic process3.04E-02
152GO:0010182: sugar mediated signaling pathway3.04E-02
153GO:0048868: pollen tube development3.04E-02
154GO:0009791: post-embryonic development3.36E-02
155GO:0019252: starch biosynthetic process3.36E-02
156GO:0002229: defense response to oomycetes3.53E-02
157GO:0032502: developmental process3.70E-02
158GO:1901657: glycosyl compound metabolic process3.87E-02
159GO:0009793: embryo development ending in seed dormancy3.98E-02
160GO:0071805: potassium ion transmembrane transport4.22E-02
161GO:0001666: response to hypoxia4.58E-02
162GO:0005975: carbohydrate metabolic process4.76E-02
163GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.77E-02
164GO:0009816: defense response to bacterium, incompatible interaction4.77E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0050614: delta24-sterol reductase activity0.00E+00
3GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
4GO:0008859: exoribonuclease II activity0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
7GO:0050613: delta14-sterol reductase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
10GO:0046905: phytoene synthase activity0.00E+00
11GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0004148: dihydrolipoyl dehydrogenase activity1.94E-05
14GO:0004375: glycine dehydrogenase (decarboxylating) activity4.29E-05
15GO:0009922: fatty acid elongase activity1.19E-04
16GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.30E-04
17GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.30E-04
18GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.30E-04
19GO:0005528: FK506 binding1.52E-04
20GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.33E-04
21GO:0000248: C-5 sterol desaturase activity3.50E-04
22GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.50E-04
23GO:0004560: alpha-L-fucosidase activity3.50E-04
24GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.50E-04
25GO:0080132: fatty acid alpha-hydroxylase activity3.50E-04
26GO:0008568: microtubule-severing ATPase activity3.50E-04
27GO:0003984: acetolactate synthase activity3.50E-04
28GO:0051996: squalene synthase activity3.50E-04
29GO:0010313: phytochrome binding3.50E-04
30GO:0030941: chloroplast targeting sequence binding3.50E-04
31GO:0004033: aldo-keto reductase (NADP) activity3.80E-04
32GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.19E-04
33GO:0042389: omega-3 fatty acid desaturase activity7.62E-04
34GO:0004047: aminomethyltransferase activity7.62E-04
35GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.62E-04
36GO:0000064: L-ornithine transmembrane transporter activity7.62E-04
37GO:0004802: transketolase activity7.62E-04
38GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.62E-04
39GO:0008967: phosphoglycolate phosphatase activity7.62E-04
40GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.62E-04
41GO:0050017: L-3-cyanoalanine synthase activity7.62E-04
42GO:0010291: carotene beta-ring hydroxylase activity7.62E-04
43GO:0005089: Rho guanyl-nucleotide exchange factor activity8.86E-04
44GO:0070330: aromatase activity1.23E-03
45GO:0004075: biotin carboxylase activity1.23E-03
46GO:0030267: glyoxylate reductase (NADP) activity1.23E-03
47GO:0070402: NADPH binding1.23E-03
48GO:0001872: (1->3)-beta-D-glucan binding1.78E-03
49GO:0048027: mRNA 5'-UTR binding1.78E-03
50GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.78E-03
51GO:0004845: uracil phosphoribosyltransferase activity2.38E-03
52GO:0004737: pyruvate decarboxylase activity2.38E-03
53GO:0051861: glycolipid binding2.38E-03
54GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.38E-03
55GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.38E-03
56GO:0010328: auxin influx transmembrane transporter activity2.38E-03
57GO:0043495: protein anchor2.38E-03
58GO:0005198: structural molecule activity2.50E-03
59GO:0003989: acetyl-CoA carboxylase activity3.05E-03
60GO:0018685: alkane 1-monooxygenase activity3.05E-03
61GO:0030976: thiamine pyrophosphate binding3.76E-03
62GO:0080030: methyl indole-3-acetate esterase activity3.76E-03
63GO:0004332: fructose-bisphosphate aldolase activity3.76E-03
64GO:0042578: phosphoric ester hydrolase activity3.76E-03
65GO:0019901: protein kinase binding4.07E-03
66GO:0004124: cysteine synthase activity4.54E-03
67GO:0051753: mannan synthase activity4.54E-03
68GO:0004849: uridine kinase activity4.54E-03
69GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.54E-03
70GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.54E-03
71GO:0016759: cellulose synthase activity5.28E-03
72GO:0019899: enzyme binding5.36E-03
73GO:0004564: beta-fructofuranosidase activity6.22E-03
74GO:0015250: water channel activity6.30E-03
75GO:0005509: calcium ion binding6.94E-03
76GO:0003843: 1,3-beta-D-glucan synthase activity7.14E-03
77GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.14E-03
78GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism8.10E-03
79GO:0004222: metalloendopeptidase activity9.09E-03
80GO:0015112: nitrate transmembrane transporter activity9.10E-03
81GO:0004575: sucrose alpha-glucosidase activity9.10E-03
82GO:0004805: trehalose-phosphatase activity1.01E-02
83GO:0003746: translation elongation factor activity1.05E-02
84GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.15E-02
85GO:0008378: galactosyltransferase activity1.24E-02
86GO:0004364: glutathione transferase activity1.30E-02
87GO:0004089: carbonate dehydratase activity1.35E-02
88GO:0031072: heat shock protein binding1.35E-02
89GO:0042802: identical protein binding1.35E-02
90GO:0000175: 3'-5'-exoribonuclease activity1.35E-02
91GO:0004565: beta-galactosidase activity1.35E-02
92GO:0008081: phosphoric diester hydrolase activity1.35E-02
93GO:0016491: oxidoreductase activity1.39E-02
94GO:0051537: 2 iron, 2 sulfur cluster binding1.46E-02
95GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.48E-02
96GO:0015293: symporter activity1.52E-02
97GO:0008146: sulfotransferase activity1.60E-02
98GO:0016887: ATPase activity1.95E-02
99GO:0043424: protein histidine kinase binding2.00E-02
100GO:0015079: potassium ion transmembrane transporter activity2.00E-02
101GO:0050660: flavin adenine dinucleotide binding2.08E-02
102GO:0019706: protein-cysteine S-palmitoyltransferase activity2.13E-02
103GO:0004540: ribonuclease activity2.13E-02
104GO:0004176: ATP-dependent peptidase activity2.13E-02
105GO:0033612: receptor serine/threonine kinase binding2.13E-02
106GO:0016760: cellulose synthase (UDP-forming) activity2.42E-02
107GO:0022891: substrate-specific transmembrane transporter activity2.42E-02
108GO:0030570: pectate lyase activity2.42E-02
109GO:0005102: receptor binding2.72E-02
110GO:0003824: catalytic activity2.80E-02
111GO:0016740: transferase activity3.19E-02
112GO:0019843: rRNA binding3.26E-02
113GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.34E-02
114GO:0004872: receptor activity3.36E-02
115GO:0048038: quinone binding3.53E-02
116GO:0016762: xyloglucan:xyloglucosyl transferase activity3.53E-02
117GO:0003924: GTPase activity3.68E-02
118GO:0004518: nuclease activity3.70E-02
119GO:0000156: phosphorelay response regulator activity3.87E-02
120GO:0008483: transaminase activity4.22E-02
121GO:0008237: metallopeptidase activity4.22E-02
122GO:0005200: structural constituent of cytoskeleton4.22E-02
123GO:0016168: chlorophyll binding4.77E-02
124GO:0005525: GTP binding4.90E-02
125GO:0009931: calcium-dependent protein serine/threonine kinase activity4.95E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009507: chloroplast1.25E-27
3GO:0009535: chloroplast thylakoid membrane2.45E-17
4GO:0009543: chloroplast thylakoid lumen5.00E-13
5GO:0009570: chloroplast stroma1.83E-10
6GO:0009941: chloroplast envelope2.16E-09
7GO:0009654: photosystem II oxygen evolving complex3.58E-09
8GO:0009534: chloroplast thylakoid1.14E-07
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.79E-07
10GO:0009579: thylakoid9.59E-07
11GO:0019898: extrinsic component of membrane1.59E-06
12GO:0030095: chloroplast photosystem II3.04E-06
13GO:0031977: thylakoid lumen2.78E-05
14GO:0005960: glycine cleavage complex4.29E-05
15GO:0046658: anchored component of plasma membrane1.25E-04
16GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.50E-04
17GO:0048046: apoplast4.22E-04
18GO:0009523: photosystem II4.76E-04
19GO:0045298: tubulin complex5.58E-04
20GO:0042170: plastid membrane7.62E-04
21GO:0009528: plastid inner membrane1.23E-03
22GO:0005775: vacuolar lumen1.78E-03
23GO:0042651: thylakoid membrane1.96E-03
24GO:0009532: plastid stroma2.16E-03
25GO:0009527: plastid outer membrane2.38E-03
26GO:0000178: exosome (RNase complex)3.05E-03
27GO:0016021: integral component of membrane4.18E-03
28GO:0009706: chloroplast inner membrane4.93E-03
29GO:0009533: chloroplast stromal thylakoid5.36E-03
30GO:0031359: integral component of chloroplast outer membrane5.36E-03
31GO:0031969: chloroplast membrane5.57E-03
32GO:0009539: photosystem II reaction center7.14E-03
33GO:0000148: 1,3-beta-D-glucan synthase complex7.14E-03
34GO:0005763: mitochondrial small ribosomal subunit8.10E-03
35GO:0009707: chloroplast outer membrane8.23E-03
36GO:0016324: apical plasma membrane1.01E-02
37GO:0009505: plant-type cell wall1.26E-02
38GO:0030659: cytoplasmic vesicle membrane1.48E-02
39GO:0031225: anchored component of membrane1.54E-02
40GO:0030176: integral component of endoplasmic reticulum membrane1.60E-02
41GO:0005789: endoplasmic reticulum membrane1.84E-02
42GO:0005886: plasma membrane3.00E-02
43GO:0009536: plastid3.36E-02
44GO:0005759: mitochondrial matrix4.08E-02
45GO:0010319: stromule4.22E-02
46GO:0009295: nucleoid4.22E-02
47GO:0000932: P-body4.58E-02
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Gene type



Gene DE type