GO Enrichment Analysis of Co-expressed Genes with
AT1G29940
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0039694: viral RNA genome replication | 0.00E+00 |
| 2 | GO:0031564: transcription antitermination | 0.00E+00 |
| 3 | GO:0007141: male meiosis I | 0.00E+00 |
| 4 | GO:0002191: cap-dependent translational initiation | 0.00E+00 |
| 5 | GO:0010499: proteasomal ubiquitin-independent protein catabolic process | 0.00E+00 |
| 6 | GO:0001676: long-chain fatty acid metabolic process | 8.27E-06 |
| 7 | GO:0009819: drought recovery | 9.31E-05 |
| 8 | GO:0042742: defense response to bacterium | 1.17E-04 |
| 9 | GO:0006805: xenobiotic metabolic process | 1.37E-04 |
| 10 | GO:0006422: aspartyl-tRNA aminoacylation | 1.37E-04 |
| 11 | GO:0006390: transcription from mitochondrial promoter | 1.37E-04 |
| 12 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 1.37E-04 |
| 13 | GO:0015706: nitrate transport | 2.75E-04 |
| 14 | GO:0010155: regulation of proton transport | 3.16E-04 |
| 15 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.16E-04 |
| 16 | GO:0030010: establishment of cell polarity | 3.16E-04 |
| 17 | GO:0015914: phospholipid transport | 3.16E-04 |
| 18 | GO:0006517: protein deglycosylation | 5.20E-04 |
| 19 | GO:0071494: cellular response to UV-C | 5.20E-04 |
| 20 | GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening | 5.20E-04 |
| 21 | GO:0061158: 3'-UTR-mediated mRNA destabilization | 5.20E-04 |
| 22 | GO:0080055: low-affinity nitrate transport | 5.20E-04 |
| 23 | GO:0048194: Golgi vesicle budding | 7.44E-04 |
| 24 | GO:0007276: gamete generation | 7.44E-04 |
| 25 | GO:0072583: clathrin-dependent endocytosis | 7.44E-04 |
| 26 | GO:0060548: negative regulation of cell death | 9.85E-04 |
| 27 | GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA | 9.85E-04 |
| 28 | GO:0010193: response to ozone | 1.17E-03 |
| 29 | GO:0000302: response to reactive oxygen species | 1.17E-03 |
| 30 | GO:0001731: formation of translation preinitiation complex | 1.53E-03 |
| 31 | GO:0006751: glutathione catabolic process | 1.53E-03 |
| 32 | GO:0048232: male gamete generation | 1.53E-03 |
| 33 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.53E-03 |
| 34 | GO:0010405: arabinogalactan protein metabolic process | 1.53E-03 |
| 35 | GO:0010150: leaf senescence | 1.81E-03 |
| 36 | GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response | 1.83E-03 |
| 37 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.83E-03 |
| 38 | GO:0042128: nitrate assimilation | 1.87E-03 |
| 39 | GO:0043090: amino acid import | 2.15E-03 |
| 40 | GO:1900056: negative regulation of leaf senescence | 2.15E-03 |
| 41 | GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway | 2.15E-03 |
| 42 | GO:0050790: regulation of catalytic activity | 2.15E-03 |
| 43 | GO:0009407: toxin catabolic process | 2.40E-03 |
| 44 | GO:0006491: N-glycan processing | 2.49E-03 |
| 45 | GO:0000028: ribosomal small subunit assembly | 2.49E-03 |
| 46 | GO:0006002: fructose 6-phosphate metabolic process | 2.85E-03 |
| 47 | GO:0006075: (1->3)-beta-D-glucan biosynthetic process | 2.85E-03 |
| 48 | GO:0009880: embryonic pattern specification | 2.85E-03 |
| 49 | GO:0042254: ribosome biogenesis | 3.21E-03 |
| 50 | GO:0046685: response to arsenic-containing substance | 3.22E-03 |
| 51 | GO:0009821: alkaloid biosynthetic process | 3.22E-03 |
| 52 | GO:0006631: fatty acid metabolic process | 3.26E-03 |
| 53 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 3.60E-03 |
| 54 | GO:0042761: very long-chain fatty acid biosynthetic process | 3.60E-03 |
| 55 | GO:0009636: response to toxic substance | 3.97E-03 |
| 56 | GO:0006995: cellular response to nitrogen starvation | 4.00E-03 |
| 57 | GO:0051026: chiasma assembly | 4.00E-03 |
| 58 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 4.00E-03 |
| 59 | GO:0000103: sulfate assimilation | 4.00E-03 |
| 60 | GO:0010200: response to chitin | 4.30E-03 |
| 61 | GO:0072593: reactive oxygen species metabolic process | 4.42E-03 |
| 62 | GO:0010582: floral meristem determinacy | 4.85E-03 |
| 63 | GO:0046686: response to cadmium ion | 5.00E-03 |
| 64 | GO:0010102: lateral root morphogenesis | 5.30E-03 |
| 65 | GO:0006952: defense response | 5.72E-03 |
| 66 | GO:0007034: vacuolar transport | 5.76E-03 |
| 67 | GO:0006446: regulation of translational initiation | 5.76E-03 |
| 68 | GO:0010053: root epidermal cell differentiation | 6.23E-03 |
| 69 | GO:0010167: response to nitrate | 6.23E-03 |
| 70 | GO:0009553: embryo sac development | 6.56E-03 |
| 71 | GO:0000027: ribosomal large subunit assembly | 7.22E-03 |
| 72 | GO:0030150: protein import into mitochondrial matrix | 7.22E-03 |
| 73 | GO:2000377: regulation of reactive oxygen species metabolic process | 7.22E-03 |
| 74 | GO:0051302: regulation of cell division | 7.73E-03 |
| 75 | GO:0061077: chaperone-mediated protein folding | 8.26E-03 |
| 76 | GO:0009414: response to water deprivation | 8.76E-03 |
| 77 | GO:0007131: reciprocal meiotic recombination | 8.79E-03 |
| 78 | GO:0031348: negative regulation of defense response | 8.79E-03 |
| 79 | GO:0010227: floral organ abscission | 9.35E-03 |
| 80 | GO:0009625: response to insect | 9.35E-03 |
| 81 | GO:0009790: embryo development | 9.88E-03 |
| 82 | GO:0042147: retrograde transport, endosome to Golgi | 1.05E-02 |
| 83 | GO:0042631: cellular response to water deprivation | 1.11E-02 |
| 84 | GO:0042391: regulation of membrane potential | 1.11E-02 |
| 85 | GO:0010501: RNA secondary structure unwinding | 1.11E-02 |
| 86 | GO:0008360: regulation of cell shape | 1.17E-02 |
| 87 | GO:0006662: glycerol ether metabolic process | 1.17E-02 |
| 88 | GO:0010197: polar nucleus fusion | 1.17E-02 |
| 89 | GO:0009646: response to absence of light | 1.23E-02 |
| 90 | GO:0006623: protein targeting to vacuole | 1.29E-02 |
| 91 | GO:0015031: protein transport | 1.31E-02 |
| 92 | GO:0031047: gene silencing by RNA | 1.42E-02 |
| 93 | GO:0009409: response to cold | 1.44E-02 |
| 94 | GO:0019760: glucosinolate metabolic process | 1.55E-02 |
| 95 | GO:0006310: DNA recombination | 1.55E-02 |
| 96 | GO:0051607: defense response to virus | 1.69E-02 |
| 97 | GO:0009826: unidimensional cell growth | 1.75E-02 |
| 98 | GO:0001666: response to hypoxia | 1.76E-02 |
| 99 | GO:0009615: response to virus | 1.76E-02 |
| 100 | GO:0009607: response to biotic stimulus | 1.83E-02 |
| 101 | GO:0006974: cellular response to DNA damage stimulus | 1.90E-02 |
| 102 | GO:0006970: response to osmotic stress | 1.96E-02 |
| 103 | GO:0009723: response to ethylene | 2.10E-02 |
| 104 | GO:0048481: plant ovule development | 2.12E-02 |
| 105 | GO:0008219: cell death | 2.12E-02 |
| 106 | GO:0048366: leaf development | 2.14E-02 |
| 107 | GO:0006499: N-terminal protein myristoylation | 2.28E-02 |
| 108 | GO:0009631: cold acclimation | 2.36E-02 |
| 109 | GO:0048527: lateral root development | 2.36E-02 |
| 110 | GO:0010119: regulation of stomatal movement | 2.36E-02 |
| 111 | GO:0010043: response to zinc ion | 2.36E-02 |
| 112 | GO:0006865: amino acid transport | 2.43E-02 |
| 113 | GO:0034599: cellular response to oxidative stress | 2.60E-02 |
| 114 | GO:0045454: cell redox homeostasis | 2.70E-02 |
| 115 | GO:0006886: intracellular protein transport | 2.78E-02 |
| 116 | GO:0032259: methylation | 3.18E-02 |
| 117 | GO:0006281: DNA repair | 3.32E-02 |
| 118 | GO:0071555: cell wall organization | 3.39E-02 |
| 119 | GO:0006979: response to oxidative stress | 3.43E-02 |
| 120 | GO:0006260: DNA replication | 3.45E-02 |
| 121 | GO:0048364: root development | 3.47E-02 |
| 122 | GO:0006364: rRNA processing | 3.72E-02 |
| 123 | GO:0006486: protein glycosylation | 3.72E-02 |
| 124 | GO:0009736: cytokinin-activated signaling pathway | 3.72E-02 |
| 125 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.82E-02 |
| 126 | GO:0006857: oligopeptide transport | 3.91E-02 |
| 127 | GO:0006096: glycolytic process | 4.19E-02 |
| 128 | GO:0009626: plant-type hypersensitive response | 4.39E-02 |
| 129 | GO:0009620: response to fungus | 4.49E-02 |
| 130 | GO:0016569: covalent chromatin modification | 4.58E-02 |
| 131 | GO:0009734: auxin-activated signaling pathway | 4.66E-02 |
| 132 | GO:0006508: proteolysis | 4.77E-02 |
| 133 | GO:0009624: response to nematode | 4.78E-02 |
| 134 | GO:0006396: RNA processing | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015370: solute:sodium symporter activity | 0.00E+00 |
| 2 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 3 | GO:0070577: lysine-acetylated histone binding | 0.00E+00 |
| 4 | GO:0050220: prostaglandin-E synthase activity | 0.00E+00 |
| 5 | GO:0098808: mRNA cap binding | 0.00E+00 |
| 6 | GO:0001072: transcription antitermination factor activity, RNA binding | 0.00E+00 |
| 7 | GO:0016504: peptidase activator activity | 0.00E+00 |
| 8 | GO:0000166: nucleotide binding | 1.01E-07 |
| 9 | GO:0052692: raffinose alpha-galactosidase activity | 3.53E-06 |
| 10 | GO:0004557: alpha-galactosidase activity | 3.53E-06 |
| 11 | GO:0102391: decanoate--CoA ligase activity | 5.36E-05 |
| 12 | GO:0043295: glutathione binding | 7.18E-05 |
| 13 | GO:0004467: long-chain fatty acid-CoA ligase activity | 7.18E-05 |
| 14 | GO:0032050: clathrin heavy chain binding | 1.37E-04 |
| 15 | GO:0004815: aspartate-tRNA ligase activity | 1.37E-04 |
| 16 | GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity | 1.37E-04 |
| 17 | GO:0070008: serine-type exopeptidase activity | 1.37E-04 |
| 18 | GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity | 1.37E-04 |
| 19 | GO:0043021: ribonucleoprotein complex binding | 3.16E-04 |
| 20 | GO:0015293: symporter activity | 4.68E-04 |
| 21 | GO:0005528: FK506 binding | 4.93E-04 |
| 22 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 5.20E-04 |
| 23 | GO:0003840: gamma-glutamyltransferase activity | 5.20E-04 |
| 24 | GO:0036374: glutathione hydrolase activity | 5.20E-04 |
| 25 | GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity | 7.44E-04 |
| 26 | GO:0031176: endo-1,4-beta-xylanase activity | 7.44E-04 |
| 27 | GO:0070628: proteasome binding | 9.85E-04 |
| 28 | GO:0015204: urea transmembrane transporter activity | 9.85E-04 |
| 29 | GO:0030976: thiamine pyrophosphate binding | 1.53E-03 |
| 30 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.53E-03 |
| 31 | GO:0004012: phospholipid-translocating ATPase activity | 1.83E-03 |
| 32 | GO:0004602: glutathione peroxidase activity | 1.83E-03 |
| 33 | GO:0004143: diacylglycerol kinase activity | 2.15E-03 |
| 34 | GO:0003872: 6-phosphofructokinase activity | 2.15E-03 |
| 35 | GO:0030515: snoRNA binding | 2.15E-03 |
| 36 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 2.49E-03 |
| 37 | GO:0003843: 1,3-beta-D-glucan synthase activity | 2.85E-03 |
| 38 | GO:0004364: glutathione transferase activity | 3.40E-03 |
| 39 | GO:0043531: ADP binding | 3.53E-03 |
| 40 | GO:0015112: nitrate transmembrane transporter activity | 3.60E-03 |
| 41 | GO:0016844: strictosidine synthase activity | 3.60E-03 |
| 42 | GO:0004713: protein tyrosine kinase activity | 4.00E-03 |
| 43 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.12E-03 |
| 44 | GO:0001054: RNA polymerase I activity | 4.42E-03 |
| 45 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.75E-03 |
| 46 | GO:0008378: galactosyltransferase activity | 4.85E-03 |
| 47 | GO:0000175: 3'-5'-exoribonuclease activity | 5.30E-03 |
| 48 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 5.30E-03 |
| 49 | GO:0004535: poly(A)-specific ribonuclease activity | 5.76E-03 |
| 50 | GO:0005516: calmodulin binding | 5.79E-03 |
| 51 | GO:0030552: cAMP binding | 6.23E-03 |
| 52 | GO:0030553: cGMP binding | 6.23E-03 |
| 53 | GO:0004190: aspartic-type endopeptidase activity | 6.23E-03 |
| 54 | GO:0015035: protein disulfide oxidoreductase activity | 6.96E-03 |
| 55 | GO:0003954: NADH dehydrogenase activity | 7.22E-03 |
| 56 | GO:0004386: helicase activity | 7.37E-03 |
| 57 | GO:0005216: ion channel activity | 7.73E-03 |
| 58 | GO:0008408: 3'-5' exonuclease activity | 8.26E-03 |
| 59 | GO:0004540: ribonuclease activity | 8.26E-03 |
| 60 | GO:0033612: receptor serine/threonine kinase binding | 8.26E-03 |
| 61 | GO:0003727: single-stranded RNA binding | 9.92E-03 |
| 62 | GO:0047134: protein-disulfide reductase activity | 1.05E-02 |
| 63 | GO:0005249: voltage-gated potassium channel activity | 1.11E-02 |
| 64 | GO:0030551: cyclic nucleotide binding | 1.11E-02 |
| 65 | GO:0005524: ATP binding | 1.15E-02 |
| 66 | GO:0004791: thioredoxin-disulfide reductase activity | 1.23E-02 |
| 67 | GO:0004872: receptor activity | 1.29E-02 |
| 68 | GO:0004197: cysteine-type endopeptidase activity | 1.42E-02 |
| 69 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.49E-02 |
| 70 | GO:0008168: methyltransferase activity | 1.75E-02 |
| 71 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.98E-02 |
| 72 | GO:0004721: phosphoprotein phosphatase activity | 1.98E-02 |
| 73 | GO:0004004: ATP-dependent RNA helicase activity | 1.98E-02 |
| 74 | GO:0008236: serine-type peptidase activity | 2.05E-02 |
| 75 | GO:0005507: copper ion binding | 2.19E-02 |
| 76 | GO:0050897: cobalt ion binding | 2.36E-02 |
| 77 | GO:0003746: translation elongation factor activity | 2.51E-02 |
| 78 | GO:0003697: single-stranded DNA binding | 2.51E-02 |
| 79 | GO:0005525: GTP binding | 2.62E-02 |
| 80 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.68E-02 |
| 81 | GO:0005198: structural molecule activity | 3.27E-02 |
| 82 | GO:0003690: double-stranded DNA binding | 3.82E-02 |
| 83 | GO:0015171: amino acid transmembrane transporter activity | 4.00E-02 |
| 84 | GO:0008234: cysteine-type peptidase activity | 4.00E-02 |
| 85 | GO:0016746: transferase activity, transferring acyl groups | 4.88E-02 |
| 86 | GO:0008026: ATP-dependent helicase activity | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019034: viral replication complex | 0.00E+00 |
| 2 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 8.22E-05 |
| 3 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 1.37E-04 |
| 4 | GO:0034245: mitochondrial DNA-directed RNA polymerase complex | 1.37E-04 |
| 5 | GO:0030014: CCR4-NOT complex | 1.37E-04 |
| 6 | GO:0005773: vacuole | 1.65E-04 |
| 7 | GO:0031304: intrinsic component of mitochondrial inner membrane | 3.16E-04 |
| 8 | GO:0070545: PeBoW complex | 3.16E-04 |
| 9 | GO:0031902: late endosome membrane | 3.63E-04 |
| 10 | GO:0046861: glyoxysomal membrane | 5.20E-04 |
| 11 | GO:0030139: endocytic vesicle | 5.20E-04 |
| 12 | GO:0005783: endoplasmic reticulum | 1.16E-03 |
| 13 | GO:0005945: 6-phosphofructokinase complex | 1.25E-03 |
| 14 | GO:0030904: retromer complex | 1.53E-03 |
| 15 | GO:0016282: eukaryotic 43S preinitiation complex | 1.53E-03 |
| 16 | GO:0033290: eukaryotic 48S preinitiation complex | 1.83E-03 |
| 17 | GO:0016272: prefoldin complex | 1.83E-03 |
| 18 | GO:0030687: preribosome, large subunit precursor | 2.15E-03 |
| 19 | GO:0009514: glyoxysome | 2.85E-03 |
| 20 | GO:0000148: 1,3-beta-D-glucan synthase complex | 2.85E-03 |
| 21 | GO:0005736: DNA-directed RNA polymerase I complex | 3.22E-03 |
| 22 | GO:0017119: Golgi transport complex | 4.00E-03 |
| 23 | GO:0030125: clathrin vesicle coat | 4.00E-03 |
| 24 | GO:0005789: endoplasmic reticulum membrane | 4.83E-03 |
| 25 | GO:0032040: small-subunit processome | 4.85E-03 |
| 26 | GO:0005886: plasma membrane | 4.86E-03 |
| 27 | GO:0005764: lysosome | 5.76E-03 |
| 28 | GO:0005730: nucleolus | 5.77E-03 |
| 29 | GO:0005834: heterotrimeric G-protein complex | 5.98E-03 |
| 30 | GO:0043234: protein complex | 6.71E-03 |
| 31 | GO:0048046: apoplast | 7.18E-03 |
| 32 | GO:0005829: cytosol | 7.27E-03 |
| 33 | GO:0005839: proteasome core complex | 8.26E-03 |
| 34 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 9.92E-03 |
| 35 | GO:0005887: integral component of plasma membrane | 9.96E-03 |
| 36 | GO:0000790: nuclear chromatin | 1.05E-02 |
| 37 | GO:0009504: cell plate | 1.29E-02 |
| 38 | GO:0005777: peroxisome | 1.67E-02 |
| 39 | GO:0030529: intracellular ribonucleoprotein complex | 1.76E-02 |
| 40 | GO:0000932: P-body | 1.76E-02 |
| 41 | GO:0005774: vacuolar membrane | 1.99E-02 |
| 42 | GO:0005802: trans-Golgi network | 2.54E-02 |
| 43 | GO:0005768: endosome | 2.98E-02 |
| 44 | GO:0016021: integral component of membrane | 3.40E-02 |
| 45 | GO:0012505: endomembrane system | 4.68E-02 |
| 46 | GO:0000139: Golgi membrane | 4.92E-02 |