GO Enrichment Analysis of Co-expressed Genes with
AT1G29660
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 2 | GO:0006223: uracil salvage | 0.00E+00 |
| 3 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 4 | GO:0010394: homogalacturonan metabolic process | 0.00E+00 |
| 5 | GO:0042493: response to drug | 0.00E+00 |
| 6 | GO:0006412: translation | 5.74E-10 |
| 7 | GO:0042254: ribosome biogenesis | 3.45E-09 |
| 8 | GO:0015976: carbon utilization | 1.15E-07 |
| 9 | GO:0006633: fatty acid biosynthetic process | 3.56E-06 |
| 10 | GO:2000122: negative regulation of stomatal complex development | 2.51E-05 |
| 11 | GO:0010037: response to carbon dioxide | 2.51E-05 |
| 12 | GO:0006183: GTP biosynthetic process | 2.51E-05 |
| 13 | GO:0006833: water transport | 3.12E-05 |
| 14 | GO:0009735: response to cytokinin | 3.85E-05 |
| 15 | GO:0042335: cuticle development | 9.65E-05 |
| 16 | GO:0000413: protein peptidyl-prolyl isomerization | 9.65E-05 |
| 17 | GO:0046620: regulation of organ growth | 1.43E-04 |
| 18 | GO:0046520: sphingoid biosynthetic process | 1.82E-04 |
| 19 | GO:0010442: guard cell morphogenesis | 1.82E-04 |
| 20 | GO:0042547: cell wall modification involved in multidimensional cell growth | 1.82E-04 |
| 21 | GO:0042371: vitamin K biosynthetic process | 1.82E-04 |
| 22 | GO:0045488: pectin metabolic process | 1.82E-04 |
| 23 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 1.82E-04 |
| 24 | GO:0060627: regulation of vesicle-mediated transport | 1.82E-04 |
| 25 | GO:0010411: xyloglucan metabolic process | 3.07E-04 |
| 26 | GO:0045454: cell redox homeostasis | 3.32E-04 |
| 27 | GO:0071258: cellular response to gravity | 4.10E-04 |
| 28 | GO:0052541: plant-type cell wall cellulose metabolic process | 4.10E-04 |
| 29 | GO:0010119: regulation of stomatal movement | 4.25E-04 |
| 30 | GO:0015840: urea transport | 6.69E-04 |
| 31 | GO:2001295: malonyl-CoA biosynthetic process | 6.69E-04 |
| 32 | GO:0042546: cell wall biogenesis | 6.94E-04 |
| 33 | GO:0009734: auxin-activated signaling pathway | 8.92E-04 |
| 34 | GO:0009826: unidimensional cell growth | 8.97E-04 |
| 35 | GO:0006241: CTP biosynthetic process | 9.55E-04 |
| 36 | GO:0006165: nucleoside diphosphate phosphorylation | 9.55E-04 |
| 37 | GO:0006228: UTP biosynthetic process | 9.55E-04 |
| 38 | GO:0009650: UV protection | 9.55E-04 |
| 39 | GO:1901332: negative regulation of lateral root development | 9.55E-04 |
| 40 | GO:0051639: actin filament network formation | 9.55E-04 |
| 41 | GO:0009411: response to UV | 1.02E-03 |
| 42 | GO:0042742: defense response to bacterium | 1.23E-03 |
| 43 | GO:0044206: UMP salvage | 1.27E-03 |
| 44 | GO:0051764: actin crosslink formation | 1.27E-03 |
| 45 | GO:0006085: acetyl-CoA biosynthetic process | 1.27E-03 |
| 46 | GO:0034220: ion transmembrane transport | 1.29E-03 |
| 47 | GO:0048359: mucilage metabolic process involved in seed coat development | 1.61E-03 |
| 48 | GO:0043097: pyrimidine nucleoside salvage | 1.61E-03 |
| 49 | GO:0006869: lipid transport | 1.98E-03 |
| 50 | GO:0006206: pyrimidine nucleobase metabolic process | 1.98E-03 |
| 51 | GO:0006014: D-ribose metabolic process | 1.98E-03 |
| 52 | GO:0042549: photosystem II stabilization | 1.98E-03 |
| 53 | GO:0006629: lipid metabolic process | 2.37E-03 |
| 54 | GO:0009612: response to mechanical stimulus | 2.38E-03 |
| 55 | GO:0006694: steroid biosynthetic process | 2.38E-03 |
| 56 | GO:0009854: oxidative photosynthetic carbon pathway | 2.38E-03 |
| 57 | GO:0010555: response to mannitol | 2.38E-03 |
| 58 | GO:0019745: pentacyclic triterpenoid biosynthetic process | 2.80E-03 |
| 59 | GO:0009645: response to low light intensity stimulus | 2.80E-03 |
| 60 | GO:0009610: response to symbiotic fungus | 2.80E-03 |
| 61 | GO:0030497: fatty acid elongation | 2.80E-03 |
| 62 | GO:0045490: pectin catabolic process | 2.96E-03 |
| 63 | GO:0055114: oxidation-reduction process | 3.23E-03 |
| 64 | GO:0009642: response to light intensity | 3.24E-03 |
| 65 | GO:0032544: plastid translation | 3.71E-03 |
| 66 | GO:0009808: lignin metabolic process | 3.71E-03 |
| 67 | GO:0009932: cell tip growth | 3.71E-03 |
| 68 | GO:0015780: nucleotide-sugar transport | 4.20E-03 |
| 69 | GO:0009926: auxin polar transport | 5.21E-03 |
| 70 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 5.24E-03 |
| 71 | GO:0043069: negative regulation of programmed cell death | 5.24E-03 |
| 72 | GO:0048829: root cap development | 5.24E-03 |
| 73 | GO:0006949: syncytium formation | 5.24E-03 |
| 74 | GO:0009733: response to auxin | 5.62E-03 |
| 75 | GO:0009773: photosynthetic electron transport in photosystem I | 5.79E-03 |
| 76 | GO:0019684: photosynthesis, light reaction | 5.79E-03 |
| 77 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.79E-03 |
| 78 | GO:0043085: positive regulation of catalytic activity | 5.79E-03 |
| 79 | GO:0000038: very long-chain fatty acid metabolic process | 5.79E-03 |
| 80 | GO:0002213: defense response to insect | 6.35E-03 |
| 81 | GO:0042538: hyperosmotic salinity response | 6.54E-03 |
| 82 | GO:0006006: glucose metabolic process | 6.94E-03 |
| 83 | GO:0010143: cutin biosynthetic process | 7.55E-03 |
| 84 | GO:0010207: photosystem II assembly | 7.55E-03 |
| 85 | GO:0019253: reductive pentose-phosphate cycle | 7.55E-03 |
| 86 | GO:0009409: response to cold | 7.79E-03 |
| 87 | GO:0015979: photosynthesis | 8.02E-03 |
| 88 | GO:0010025: wax biosynthetic process | 8.82E-03 |
| 89 | GO:0006636: unsaturated fatty acid biosynthetic process | 8.82E-03 |
| 90 | GO:0006071: glycerol metabolic process | 8.82E-03 |
| 91 | GO:0019762: glucosinolate catabolic process | 8.82E-03 |
| 92 | GO:0009740: gibberellic acid mediated signaling pathway | 9.41E-03 |
| 93 | GO:0000027: ribosomal large subunit assembly | 9.48E-03 |
| 94 | GO:0051017: actin filament bundle assembly | 9.48E-03 |
| 95 | GO:0019344: cysteine biosynthetic process | 9.48E-03 |
| 96 | GO:0009116: nucleoside metabolic process | 9.48E-03 |
| 97 | GO:0010026: trichome differentiation | 1.02E-02 |
| 98 | GO:0003333: amino acid transmembrane transport | 1.09E-02 |
| 99 | GO:0061077: chaperone-mediated protein folding | 1.09E-02 |
| 100 | GO:0009814: defense response, incompatible interaction | 1.16E-02 |
| 101 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.23E-02 |
| 102 | GO:0040007: growth | 1.23E-02 |
| 103 | GO:0006284: base-excision repair | 1.31E-02 |
| 104 | GO:0045489: pectin biosynthetic process | 1.54E-02 |
| 105 | GO:0006662: glycerol ether metabolic process | 1.54E-02 |
| 106 | GO:0009741: response to brassinosteroid | 1.54E-02 |
| 107 | GO:0009414: response to water deprivation | 1.59E-02 |
| 108 | GO:0071555: cell wall organization | 1.64E-02 |
| 109 | GO:0019252: starch biosynthetic process | 1.70E-02 |
| 110 | GO:0071554: cell wall organization or biogenesis | 1.79E-02 |
| 111 | GO:0002229: defense response to oomycetes | 1.79E-02 |
| 112 | GO:0016132: brassinosteroid biosynthetic process | 1.79E-02 |
| 113 | GO:0010583: response to cyclopentenone | 1.87E-02 |
| 114 | GO:0032502: developmental process | 1.87E-02 |
| 115 | GO:0009630: gravitropism | 1.87E-02 |
| 116 | GO:0009739: response to gibberellin | 1.94E-02 |
| 117 | GO:1901657: glycosyl compound metabolic process | 1.96E-02 |
| 118 | GO:0009828: plant-type cell wall loosening | 2.05E-02 |
| 119 | GO:0009416: response to light stimulus | 2.30E-02 |
| 120 | GO:0010027: thylakoid membrane organization | 2.32E-02 |
| 121 | GO:0016311: dephosphorylation | 2.71E-02 |
| 122 | GO:0009817: defense response to fungus, incompatible interaction | 2.81E-02 |
| 123 | GO:0006810: transport | 2.91E-02 |
| 124 | GO:0010311: lateral root formation | 2.91E-02 |
| 125 | GO:0009834: plant-type secondary cell wall biogenesis | 3.01E-02 |
| 126 | GO:0005975: carbohydrate metabolic process | 3.05E-02 |
| 127 | GO:0055085: transmembrane transport | 3.10E-02 |
| 128 | GO:0007568: aging | 3.11E-02 |
| 129 | GO:0006457: protein folding | 3.17E-02 |
| 130 | GO:0006865: amino acid transport | 3.22E-02 |
| 131 | GO:0016051: carbohydrate biosynthetic process | 3.32E-02 |
| 132 | GO:0009853: photorespiration | 3.32E-02 |
| 133 | GO:0034599: cellular response to oxidative stress | 3.43E-02 |
| 134 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.44E-02 |
| 135 | GO:0006631: fatty acid metabolic process | 3.76E-02 |
| 136 | GO:0042542: response to hydrogen peroxide | 3.87E-02 |
| 137 | GO:0009640: photomorphogenesis | 3.98E-02 |
| 138 | GO:0008643: carbohydrate transport | 4.21E-02 |
| 139 | GO:0009664: plant-type cell wall organization | 4.68E-02 |
| 140 | GO:0006281: DNA repair | 4.89E-02 |
| 141 | GO:0009809: lignin biosynthetic process | 4.92E-02 |
| 142 | GO:0009585: red, far-red light phototransduction | 4.92E-02 |
| 143 | GO:0009737: response to abscisic acid | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016631: enoyl-[acyl-carrier-protein] reductase activity | 0.00E+00 |
| 2 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 3 | GO:0102245: lupan-3beta,20-diol synthase activity | 0.00E+00 |
| 4 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 5 | GO:0019146: arabinose-5-phosphate isomerase activity | 0.00E+00 |
| 6 | GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity | 0.00E+00 |
| 7 | GO:0050614: delta24-sterol reductase activity | 0.00E+00 |
| 8 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 9 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 10 | GO:0003735: structural constituent of ribosome | 2.58E-13 |
| 11 | GO:0019843: rRNA binding | 2.80E-12 |
| 12 | GO:0051920: peroxiredoxin activity | 9.09E-07 |
| 13 | GO:0016209: antioxidant activity | 2.27E-06 |
| 14 | GO:0004089: carbonate dehydratase activity | 1.74E-05 |
| 15 | GO:0030570: pectate lyase activity | 6.66E-05 |
| 16 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.43E-05 |
| 17 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.47E-04 |
| 18 | GO:0080132: fatty acid alpha-hydroxylase activity | 1.82E-04 |
| 19 | GO:0015200: methylammonium transmembrane transporter activity | 1.82E-04 |
| 20 | GO:0000170: sphingosine hydroxylase activity | 1.82E-04 |
| 21 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 1.82E-04 |
| 22 | GO:0015250: water channel activity | 2.47E-04 |
| 23 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 3.07E-04 |
| 24 | GO:0042284: sphingolipid delta-4 desaturase activity | 4.10E-04 |
| 25 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 4.10E-04 |
| 26 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 4.10E-04 |
| 27 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.10E-04 |
| 28 | GO:0042389: omega-3 fatty acid desaturase activity | 4.10E-04 |
| 29 | GO:0003938: IMP dehydrogenase activity | 4.10E-04 |
| 30 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 5.29E-04 |
| 31 | GO:0050734: hydroxycinnamoyltransferase activity | 6.69E-04 |
| 32 | GO:0004148: dihydrolipoyl dehydrogenase activity | 6.69E-04 |
| 33 | GO:0004075: biotin carboxylase activity | 6.69E-04 |
| 34 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 6.69E-04 |
| 35 | GO:0042300: beta-amyrin synthase activity | 6.69E-04 |
| 36 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 6.69E-04 |
| 37 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 6.69E-04 |
| 38 | GO:0042299: lupeol synthase activity | 9.55E-04 |
| 39 | GO:0004550: nucleoside diphosphate kinase activity | 9.55E-04 |
| 40 | GO:0008097: 5S rRNA binding | 9.55E-04 |
| 41 | GO:0003878: ATP citrate synthase activity | 9.55E-04 |
| 42 | GO:0010328: auxin influx transmembrane transporter activity | 1.27E-03 |
| 43 | GO:0052793: pectin acetylesterase activity | 1.27E-03 |
| 44 | GO:0015204: urea transmembrane transporter activity | 1.27E-03 |
| 45 | GO:0004659: prenyltransferase activity | 1.27E-03 |
| 46 | GO:0004845: uracil phosphoribosyltransferase activity | 1.27E-03 |
| 47 | GO:0016836: hydro-lyase activity | 1.27E-03 |
| 48 | GO:0003989: acetyl-CoA carboxylase activity | 1.61E-03 |
| 49 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.61E-03 |
| 50 | GO:0009922: fatty acid elongase activity | 1.61E-03 |
| 51 | GO:0019137: thioglucosidase activity | 1.98E-03 |
| 52 | GO:0008519: ammonium transmembrane transporter activity | 1.98E-03 |
| 53 | GO:0016829: lyase activity | 2.18E-03 |
| 54 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.19E-03 |
| 55 | GO:0004747: ribokinase activity | 2.38E-03 |
| 56 | GO:0004849: uridine kinase activity | 2.38E-03 |
| 57 | GO:0008865: fructokinase activity | 3.24E-03 |
| 58 | GO:0052747: sinapyl alcohol dehydrogenase activity | 3.24E-03 |
| 59 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.71E-03 |
| 60 | GO:0008289: lipid binding | 3.91E-03 |
| 61 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 4.20E-03 |
| 62 | GO:0008422: beta-glucosidase activity | 4.42E-03 |
| 63 | GO:0047617: acyl-CoA hydrolase activity | 4.71E-03 |
| 64 | GO:0004601: peroxidase activity | 5.15E-03 |
| 65 | GO:0008047: enzyme activator activity | 5.24E-03 |
| 66 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 6.35E-03 |
| 67 | GO:0008266: poly(U) RNA binding | 7.55E-03 |
| 68 | GO:0052689: carboxylic ester hydrolase activity | 7.69E-03 |
| 69 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 8.82E-03 |
| 70 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 8.82E-03 |
| 71 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 8.82E-03 |
| 72 | GO:0005528: FK506 binding | 9.48E-03 |
| 73 | GO:0008514: organic anion transmembrane transporter activity | 1.31E-02 |
| 74 | GO:0047134: protein-disulfide reductase activity | 1.38E-02 |
| 75 | GO:0008080: N-acetyltransferase activity | 1.54E-02 |
| 76 | GO:0004791: thioredoxin-disulfide reductase activity | 1.62E-02 |
| 77 | GO:0003824: catalytic activity | 1.89E-02 |
| 78 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.96E-02 |
| 79 | GO:0051015: actin filament binding | 1.96E-02 |
| 80 | GO:0005200: structural constituent of cytoskeleton | 2.14E-02 |
| 81 | GO:0016413: O-acetyltransferase activity | 2.23E-02 |
| 82 | GO:0102483: scopolin beta-glucosidase activity | 2.61E-02 |
| 83 | GO:0016788: hydrolase activity, acting on ester bonds | 2.74E-02 |
| 84 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.11E-02 |
| 85 | GO:0003993: acid phosphatase activity | 3.43E-02 |
| 86 | GO:0005507: copper ion binding | 3.57E-02 |
| 87 | GO:0050661: NADP binding | 3.65E-02 |
| 88 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.21E-02 |
| 89 | GO:0015293: symporter activity | 4.32E-02 |
| 90 | GO:0051287: NAD binding | 4.56E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005835: fatty acid synthase complex | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009570: chloroplast stroma | 5.92E-25 |
| 4 | GO:0009941: chloroplast envelope | 3.47E-22 |
| 5 | GO:0009507: chloroplast | 2.48E-19 |
| 6 | GO:0005840: ribosome | 5.54E-12 |
| 7 | GO:0009579: thylakoid | 3.16E-11 |
| 8 | GO:0048046: apoplast | 3.41E-11 |
| 9 | GO:0031977: thylakoid lumen | 5.27E-11 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 3.01E-09 |
| 11 | GO:0031225: anchored component of membrane | 3.42E-07 |
| 12 | GO:0009505: plant-type cell wall | 3.42E-07 |
| 13 | GO:0009535: chloroplast thylakoid membrane | 7.50E-07 |
| 14 | GO:0016020: membrane | 3.27E-06 |
| 15 | GO:0046658: anchored component of plasma membrane | 1.05E-05 |
| 16 | GO:0000311: plastid large ribosomal subunit | 1.40E-05 |
| 17 | GO:0005618: cell wall | 6.01E-05 |
| 18 | GO:0009506: plasmodesma | 1.60E-04 |
| 19 | GO:0009547: plastid ribosome | 1.82E-04 |
| 20 | GO:0010319: stromule | 2.10E-04 |
| 21 | GO:0022626: cytosolic ribosome | 2.70E-04 |
| 22 | GO:0009534: chloroplast thylakoid | 4.41E-04 |
| 23 | GO:0009654: photosystem II oxygen evolving complex | 7.90E-04 |
| 24 | GO:0032432: actin filament bundle | 9.55E-04 |
| 25 | GO:0009346: citrate lyase complex | 9.55E-04 |
| 26 | GO:0019898: extrinsic component of membrane | 1.60E-03 |
| 27 | GO:0042807: central vacuole | 2.80E-03 |
| 28 | GO:0009533: chloroplast stromal thylakoid | 2.80E-03 |
| 29 | GO:0005576: extracellular region | 3.30E-03 |
| 30 | GO:0015934: large ribosomal subunit | 3.70E-03 |
| 31 | GO:0000326: protein storage vacuole | 3.71E-03 |
| 32 | GO:0005886: plasma membrane | 3.97E-03 |
| 33 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.20E-03 |
| 34 | GO:0045298: tubulin complex | 4.20E-03 |
| 35 | GO:0008180: COP9 signalosome | 4.20E-03 |
| 36 | GO:0005884: actin filament | 5.79E-03 |
| 37 | GO:0022625: cytosolic large ribosomal subunit | 7.22E-03 |
| 38 | GO:0030095: chloroplast photosystem II | 7.55E-03 |
| 39 | GO:0015935: small ribosomal subunit | 1.09E-02 |
| 40 | GO:0005887: integral component of plasma membrane | 1.64E-02 |
| 41 | GO:0019005: SCF ubiquitin ligase complex | 2.81E-02 |
| 42 | GO:0005789: endoplasmic reticulum membrane | 3.08E-02 |
| 43 | GO:0005874: microtubule | 3.22E-02 |
| 44 | GO:0005819: spindle | 3.54E-02 |
| 45 | GO:0005802: trans-Golgi network | 4.12E-02 |
| 46 | GO:0005768: endosome | 4.82E-02 |
| 47 | GO:0000502: proteasome complex | 4.92E-02 |