co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G29500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0046620: regulation of organ growth	6.68E-10
5	GO:0042254: ribosome biogenesis	2.75E-07
6	GO:0006412: translation	2.88E-06
7	GO:0009926: auxin polar transport	3.83E-06
8	GO:0009733: response to auxin	8.39E-06
9	GO:0046520: sphingoid biosynthetic process	6.58E-05
10	GO:0006006: glucose metabolic process	1.11E-04
11	GO:0010207: photosystem II assembly	1.27E-04
12	GO:0010143: cutin biosynthetic process	1.27E-04
13	GO:0001736: establishment of planar polarity	1.59E-04
14	GO:0006833: water transport	1.62E-04
15	GO:0015840: urea transport	2.69E-04
16	GO:0009650: UV protection	3.90E-04
17	GO:0042549: photosystem II stabilization	8.06E-04
18	GO:0042372: phylloquinone biosynthetic process	9.59E-04
19	GO:0080086: stamen filament development	9.59E-04
20	GO:0009610: response to symbiotic fungus	1.12E-03
21	GO:1900056: negative regulation of leaf senescence	1.12E-03
22	GO:0006631: fatty acid metabolic process	1.24E-03
23	GO:0030091: protein repair	1.29E-03
24	GO:0010206: photosystem II repair	1.65E-03
25	GO:0009051: pentose-phosphate shunt, oxidative branch	1.65E-03
26	GO:0016042: lipid catabolic process	1.85E-03
27	GO:0043069: negative regulation of programmed cell death	2.05E-03
28	GO:0048829: root cap development	2.05E-03
29	GO:0018119: peptidyl-cysteine S-nitrosylation	2.26E-03
30	GO:0048765: root hair cell differentiation	2.26E-03
31	GO:0010015: root morphogenesis	2.26E-03
32	GO:0016024: CDP-diacylglycerol biosynthetic process	2.48E-03
33	GO:0019253: reductive pentose-phosphate cycle	2.93E-03
34	GO:0009734: auxin-activated signaling pathway	2.95E-03
35	GO:0009735: response to cytokinin	3.53E-03
36	GO:0000027: ribosomal large subunit assembly	3.65E-03
37	GO:0040008: regulation of growth	4.14E-03
38	GO:0003333: amino acid transmembrane transport	4.17E-03
39	GO:0009411: response to UV	4.70E-03
40	GO:0006284: base-excision repair	4.98E-03
41	GO:0034220: ion transmembrane transport	5.55E-03
42	GO:0000413: protein peptidyl-prolyl isomerization	5.55E-03
43	GO:0009958: positive gravitropism	5.85E-03
44	GO:0009658: chloroplast organization	6.69E-03
45	GO:0009630: gravitropism	7.08E-03
46	GO:0030163: protein catabolic process	7.40E-03
47	GO:0010027: thylakoid membrane organization	8.74E-03
48	GO:0009627: systemic acquired resistance	9.44E-03
49	GO:0015979: photosynthesis	9.48E-03
50	GO:0015995: chlorophyll biosynthetic process	9.79E-03
51	GO:0010311: lateral root formation	1.09E-02
52	GO:0006865: amino acid transport	1.20E-02
53	GO:0006281: DNA repair	1.23E-02
54	GO:0030001: metal ion transport	1.36E-02
55	GO:0009640: photomorphogenesis	1.49E-02
56	GO:0006096: glycolytic process	2.07E-02
57	GO:0009624: response to nematode	2.36E-02
58	GO:0009742: brassinosteroid mediated signaling pathway	2.46E-02
59	GO:0055085: transmembrane transport	2.77E-02
60	GO:0009790: embryo development	3.09E-02
61	GO:0006633: fatty acid biosynthetic process	3.26E-02
62	GO:0045490: pectin catabolic process	3.49E-02
63	GO:0006470: protein dephosphorylation	3.83E-02
64	GO:0009414: response to water deprivation	4.30E-02
65	GO:0071555: cell wall organization	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0019843: rRNA binding	5.10E-10
4	GO:0005528: FK506 binding	3.56E-08
5	GO:0003735: structural constituent of ribosome	3.61E-08
6	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.27E-07
7	GO:0015200: methylammonium transmembrane transporter activity	6.58E-05
8	GO:0000170: sphingosine hydroxylase activity	6.58E-05
9	GO:0080132: fatty acid alpha-hydroxylase activity	6.58E-05
10	GO:0042284: sphingolipid delta-4 desaturase activity	1.59E-04
11	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.59E-04
12	GO:0052689: carboxylic ester hydrolase activity	1.75E-04
13	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.69E-04
14	GO:0050734: hydroxycinnamoyltransferase activity	2.69E-04
15	GO:0015204: urea transmembrane transporter activity	5.20E-04
16	GO:0010011: auxin binding	5.20E-04
17	GO:0004345: glucose-6-phosphate dehydrogenase activity	5.20E-04
18	GO:0010328: auxin influx transmembrane transporter activity	5.20E-04
19	GO:0052793: pectin acetylesterase activity	5.20E-04
20	GO:0016791: phosphatase activity	5.49E-04
21	GO:0015250: water channel activity	6.52E-04
22	GO:0008725: DNA-3-methyladenine glycosylase activity	6.60E-04
23	GO:0016208: AMP binding	8.06E-04
24	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	8.06E-04
25	GO:0008519: ammonium transmembrane transporter activity	8.06E-04
26	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	8.06E-04
27	GO:0016788: hydrolase activity, acting on ester bonds	9.24E-04
28	GO:0004017: adenylate kinase activity	9.59E-04
29	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	9.59E-04
30	GO:0003993: acid phosphatase activity	1.10E-03
31	GO:0050661: NADP binding	1.19E-03
32	GO:0004565: beta-galactosidase activity	2.70E-03
33	GO:0016829: lyase activity	3.41E-03
34	GO:0030570: pectate lyase activity	4.70E-03
35	GO:0008080: N-acetyltransferase activity	5.85E-03
36	GO:0008236: serine-type peptidase activity	1.02E-02
37	GO:0003824: catalytic activity	1.09E-02
38	GO:0004722: protein serine/threonine phosphatase activity	1.09E-02
39	GO:0015293: symporter activity	1.62E-02
40	GO:0051287: NAD binding	1.70E-02
41	GO:0015171: amino acid transmembrane transporter activity	1.98E-02
42	GO:0004650: polygalacturonase activity	2.21E-02
43	GO:0016874: ligase activity	2.26E-02
44	GO:0016746: transferase activity, transferring acyl groups	2.41E-02
45	GO:0004252: serine-type endopeptidase activity	2.99E-02
46	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.32E-02
47	GO:0005509: calcium ion binding	4.07E-02
48	GO:0005506: iron ion binding	4.34E-02
49	GO:0005215: transporter activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009570: chloroplast stroma	4.91E-12
3	GO:0009543: chloroplast thylakoid lumen	9.38E-12
4	GO:0031977: thylakoid lumen	1.05E-09
5	GO:0009507: chloroplast	3.09E-08
6	GO:0009579: thylakoid	5.42E-08
7	GO:0009941: chloroplast envelope	1.88E-07
8	GO:0005840: ribosome	5.06E-07
9	GO:0009535: chloroplast thylakoid membrane	6.59E-05
10	GO:0009505: plant-type cell wall	1.01E-04
11	GO:0030095: chloroplast photosystem II	1.27E-04
12	GO:0009534: chloroplast thylakoid	1.45E-04
13	GO:0009654: photosystem II oxygen evolving complex	2.02E-04
14	GO:0019898: extrinsic component of membrane	4.26E-04
15	GO:0016020: membrane	9.53E-04
16	GO:0042807: central vacuole	1.12E-03
17	GO:0009986: cell surface	1.12E-03
18	GO:0009533: chloroplast stromal thylakoid	1.12E-03
19	GO:0000326: protein storage vacuole	1.47E-03
20	GO:0008180: COP9 signalosome	1.65E-03
21	GO:0015935: small ribosomal subunit	4.17E-03
22	GO:0005576: extracellular region	4.62E-03
23	GO:0005778: peroxisomal membrane	8.06E-03
24	GO:0031969: chloroplast membrane	8.30E-03
25	GO:0022625: cytosolic large ribosomal subunit	8.73E-03
26	GO:0019005: SCF ubiquitin ligase complex	1.05E-02
27	GO:0015934: large ribosomal subunit	1.17E-02
28	GO:0048046: apoplast	1.40E-02
29	GO:0005887: integral component of plasma membrane	1.67E-02
30	GO:0000502: proteasome complex	1.84E-02
31	GO:0022626: cytosolic ribosome	2.09E-02
32	GO:0005773: vacuole	2.47E-02
33	GO:0031225: anchored component of membrane	3.41E-02
34	GO:0009506: plasmodesma	3.47E-02
35	GO:0009705: plant-type vacuole membrane	3.49E-02