GO Enrichment Analysis of Co-expressed Genes with
AT1G29390
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019685: photosynthesis, dark reaction | 0.00E+00 |
| 2 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 3 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 4 | GO:0000023: maltose metabolic process | 2.76E-05 |
| 5 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 7.01E-05 |
| 6 | GO:0009629: response to gravity | 7.01E-05 |
| 7 | GO:0007154: cell communication | 7.01E-05 |
| 8 | GO:0045910: negative regulation of DNA recombination | 1.23E-04 |
| 9 | GO:0070828: heterochromatin organization | 1.23E-04 |
| 10 | GO:0006020: inositol metabolic process | 1.83E-04 |
| 11 | GO:2001141: regulation of RNA biosynthetic process | 1.83E-04 |
| 12 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.48E-04 |
| 13 | GO:0006021: inositol biosynthetic process | 2.48E-04 |
| 14 | GO:0009107: lipoate biosynthetic process | 3.18E-04 |
| 15 | GO:0009247: glycolipid biosynthetic process | 3.18E-04 |
| 16 | GO:0006544: glycine metabolic process | 3.18E-04 |
| 17 | GO:0006563: L-serine metabolic process | 3.92E-04 |
| 18 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 3.92E-04 |
| 19 | GO:0046855: inositol phosphate dephosphorylation | 3.92E-04 |
| 20 | GO:0042026: protein refolding | 4.69E-04 |
| 21 | GO:0006458: 'de novo' protein folding | 4.69E-04 |
| 22 | GO:0048564: photosystem I assembly | 6.32E-04 |
| 23 | GO:0019375: galactolipid biosynthetic process | 6.32E-04 |
| 24 | GO:0009704: de-etiolation | 6.32E-04 |
| 25 | GO:0071482: cellular response to light stimulus | 7.18E-04 |
| 26 | GO:0009657: plastid organization | 7.18E-04 |
| 27 | GO:0009626: plant-type hypersensitive response | 7.69E-04 |
| 28 | GO:0010206: photosystem II repair | 8.07E-04 |
| 29 | GO:0010205: photoinhibition | 8.99E-04 |
| 30 | GO:0035999: tetrahydrofolate interconversion | 8.99E-04 |
| 31 | GO:0006298: mismatch repair | 9.92E-04 |
| 32 | GO:0006415: translational termination | 1.09E-03 |
| 33 | GO:0019684: photosynthesis, light reaction | 1.09E-03 |
| 34 | GO:0006352: DNA-templated transcription, initiation | 1.09E-03 |
| 35 | GO:0006790: sulfur compound metabolic process | 1.19E-03 |
| 36 | GO:0005983: starch catabolic process | 1.19E-03 |
| 37 | GO:0009767: photosynthetic electron transport chain | 1.29E-03 |
| 38 | GO:0005986: sucrose biosynthetic process | 1.29E-03 |
| 39 | GO:0010020: chloroplast fission | 1.40E-03 |
| 40 | GO:0010207: photosystem II assembly | 1.40E-03 |
| 41 | GO:0046854: phosphatidylinositol phosphorylation | 1.50E-03 |
| 42 | GO:0016575: histone deacetylation | 1.85E-03 |
| 43 | GO:0061077: chaperone-mediated protein folding | 1.97E-03 |
| 44 | GO:0016226: iron-sulfur cluster assembly | 2.09E-03 |
| 45 | GO:0009658: chloroplast organization | 2.22E-03 |
| 46 | GO:0006342: chromatin silencing | 2.74E-03 |
| 47 | GO:0006814: sodium ion transport | 2.88E-03 |
| 48 | GO:0015979: photosynthesis | 3.12E-03 |
| 49 | GO:0030163: protein catabolic process | 3.45E-03 |
| 50 | GO:0032259: methylation | 3.86E-03 |
| 51 | GO:0009911: positive regulation of flower development | 4.06E-03 |
| 52 | GO:0010027: thylakoid membrane organization | 4.06E-03 |
| 53 | GO:0046686: response to cadmium ion | 4.07E-03 |
| 54 | GO:0009853: photorespiration | 5.73E-03 |
| 55 | GO:0009735: response to cytokinin | 6.51E-03 |
| 56 | GO:0009416: response to light stimulus | 7.12E-03 |
| 57 | GO:0009965: leaf morphogenesis | 7.40E-03 |
| 58 | GO:0009809: lignin biosynthetic process | 8.40E-03 |
| 59 | GO:0006417: regulation of translation | 9.01E-03 |
| 60 | GO:0009620: response to fungus | 1.01E-02 |
| 61 | GO:0009624: response to nematode | 1.07E-02 |
| 62 | GO:0006396: RNA processing | 1.10E-02 |
| 63 | GO:0009790: embryo development | 1.40E-02 |
| 64 | GO:0007623: circadian rhythm | 1.58E-02 |
| 65 | GO:0009451: RNA modification | 1.61E-02 |
| 66 | GO:0009617: response to bacterium | 1.79E-02 |
| 67 | GO:0005975: carbohydrate metabolic process | 2.20E-02 |
| 68 | GO:0080167: response to karrikin | 2.51E-02 |
| 69 | GO:0007275: multicellular organism development | 2.85E-02 |
| 70 | GO:0045454: cell redox homeostasis | 2.86E-02 |
| 71 | GO:0009793: embryo development ending in seed dormancy | 3.35E-02 |
| 72 | GO:0006508: proteolysis | 4.43E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005363: maltose transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 3 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 4 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 5 | GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity | 2.76E-05 |
| 6 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.76E-05 |
| 7 | GO:0008266: poly(U) RNA binding | 3.57E-05 |
| 8 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 7.01E-05 |
| 9 | GO:0052832: inositol monophosphate 3-phosphatase activity | 7.01E-05 |
| 10 | GO:0008934: inositol monophosphate 1-phosphatase activity | 7.01E-05 |
| 11 | GO:0052833: inositol monophosphate 4-phosphatase activity | 7.01E-05 |
| 12 | GO:0030385: ferredoxin:thioredoxin reductase activity | 7.01E-05 |
| 13 | GO:0052692: raffinose alpha-galactosidase activity | 1.23E-04 |
| 14 | GO:0004324: ferredoxin-NADP+ reductase activity | 1.23E-04 |
| 15 | GO:0016992: lipoate synthase activity | 1.23E-04 |
| 16 | GO:0004557: alpha-galactosidase activity | 1.23E-04 |
| 17 | GO:0050307: sucrose-phosphate phosphatase activity | 1.23E-04 |
| 18 | GO:0008508: bile acid:sodium symporter activity | 1.83E-04 |
| 19 | GO:0035250: UDP-galactosyltransferase activity | 1.83E-04 |
| 20 | GO:0048487: beta-tubulin binding | 1.83E-04 |
| 21 | GO:0016149: translation release factor activity, codon specific | 1.83E-04 |
| 22 | GO:0001053: plastid sigma factor activity | 2.48E-04 |
| 23 | GO:0016987: sigma factor activity | 2.48E-04 |
| 24 | GO:0004222: metalloendopeptidase activity | 3.14E-04 |
| 25 | GO:0004372: glycine hydroxymethyltransferase activity | 3.18E-04 |
| 26 | GO:0003959: NADPH dehydrogenase activity | 3.18E-04 |
| 27 | GO:0030983: mismatched DNA binding | 3.92E-04 |
| 28 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 4.69E-04 |
| 29 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 4.69E-04 |
| 30 | GO:0043621: protein self-association | 4.99E-04 |
| 31 | GO:0052747: sinapyl alcohol dehydrogenase activity | 6.32E-04 |
| 32 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 7.18E-04 |
| 33 | GO:0003747: translation release factor activity | 8.07E-04 |
| 34 | GO:0044183: protein binding involved in protein folding | 1.09E-03 |
| 35 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 1.19E-03 |
| 36 | GO:0051536: iron-sulfur cluster binding | 1.73E-03 |
| 37 | GO:0004407: histone deacetylase activity | 1.73E-03 |
| 38 | GO:0004176: ATP-dependent peptidase activity | 1.97E-03 |
| 39 | GO:0008168: methyltransferase activity | 2.14E-03 |
| 40 | GO:0003684: damaged DNA binding | 3.60E-03 |
| 41 | GO:0008237: metallopeptidase activity | 3.75E-03 |
| 42 | GO:0004519: endonuclease activity | 4.38E-03 |
| 43 | GO:0004721: phosphoprotein phosphatase activity | 4.54E-03 |
| 44 | GO:0016887: ATPase activity | 6.22E-03 |
| 45 | GO:0051539: 4 iron, 4 sulfur cluster binding | 6.27E-03 |
| 46 | GO:0005198: structural molecule activity | 7.40E-03 |
| 47 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 8.40E-03 |
| 48 | GO:0051082: unfolded protein binding | 1.07E-02 |
| 49 | GO:0030170: pyridoxal phosphate binding | 1.36E-02 |
| 50 | GO:0008194: UDP-glycosyltransferase activity | 1.71E-02 |
| 51 | GO:0016491: oxidoreductase activity | 1.91E-02 |
| 52 | GO:0046982: protein heterodimerization activity | 2.13E-02 |
| 53 | GO:0000287: magnesium ion binding | 2.13E-02 |
| 54 | GO:0003682: chromatin binding | 2.24E-02 |
| 55 | GO:0046872: metal ion binding | 2.81E-02 |
| 56 | GO:0004722: protein serine/threonine phosphatase activity | 3.05E-02 |
| 57 | GO:0003924: GTPase activity | 3.32E-02 |
| 58 | GO:0009055: electron carrier activity | 3.49E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 8.73E-12 |
| 4 | GO:0009570: chloroplast stroma | 2.07E-09 |
| 5 | GO:0009534: chloroplast thylakoid | 1.76E-08 |
| 6 | GO:0009941: chloroplast envelope | 1.70E-06 |
| 7 | GO:0009706: chloroplast inner membrane | 5.15E-05 |
| 8 | GO:0000792: heterochromatin | 7.01E-05 |
| 9 | GO:0009535: chloroplast thylakoid membrane | 2.07E-04 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 8.07E-04 |
| 11 | GO:0009579: thylakoid | 1.20E-03 |
| 12 | GO:0000790: nuclear chromatin | 2.48E-03 |
| 13 | GO:0010319: stromule | 3.75E-03 |
| 14 | GO:0000786: nucleosome | 5.55E-03 |
| 15 | GO:0031977: thylakoid lumen | 6.45E-03 |
| 16 | GO:0048046: apoplast | 1.19E-02 |
| 17 | GO:0010287: plastoglobule | 1.21E-02 |
| 18 | GO:0005759: mitochondrial matrix | 1.48E-02 |
| 19 | GO:0009536: plastid | 1.77E-02 |
| 20 | GO:0005829: cytosol | 2.34E-02 |
| 21 | GO:0043231: intracellular membrane-bounded organelle | 3.56E-02 |
| 22 | GO:0022626: cytosolic ribosome | 4.84E-02 |