Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G28680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080056: petal vascular tissue pattern formation0.00E+00
2GO:0043201: response to leucine0.00E+00
3GO:0042430: indole-containing compound metabolic process0.00E+00
4GO:0080053: response to phenylalanine0.00E+00
5GO:0080057: sepal vascular tissue pattern formation0.00E+00
6GO:0080052: response to histidine0.00E+00
7GO:0006793: phosphorus metabolic process0.00E+00
8GO:0000478: endonucleolytic cleavage involved in rRNA processing0.00E+00
9GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
10GO:0072722: response to amitrole0.00E+00
11GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
12GO:0006468: protein phosphorylation1.88E-05
13GO:0046686: response to cadmium ion4.01E-05
14GO:0006874: cellular calcium ion homeostasis1.45E-04
15GO:0016998: cell wall macromolecule catabolic process1.66E-04
16GO:0006099: tricarboxylic acid cycle1.84E-04
17GO:0071456: cellular response to hypoxia1.89E-04
18GO:0006631: fatty acid metabolic process2.29E-04
19GO:0006047: UDP-N-acetylglucosamine metabolic process3.19E-04
20GO:1990641: response to iron ion starvation3.19E-04
21GO:0080173: male-female gamete recognition during double fertilization3.19E-04
22GO:0010265: SCF complex assembly3.19E-04
23GO:0019276: UDP-N-acetylgalactosamine metabolic process3.19E-04
24GO:0080120: CAAX-box protein maturation3.19E-04
25GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine3.19E-04
26GO:0071586: CAAX-box protein processing3.19E-04
27GO:0009737: response to abscisic acid4.42E-04
28GO:0046685: response to arsenic-containing substance4.90E-04
29GO:0006098: pentose-phosphate shunt4.90E-04
30GO:0051865: protein autoubiquitination4.90E-04
31GO:0042742: defense response to bacterium6.01E-04
32GO:0006979: response to oxidative stress6.13E-04
33GO:0006032: chitin catabolic process6.75E-04
34GO:0019521: D-gluconate metabolic process6.97E-04
35GO:0009866: induced systemic resistance, ethylene mediated signaling pathway6.97E-04
36GO:0019374: galactolipid metabolic process6.97E-04
37GO:0006101: citrate metabolic process6.97E-04
38GO:0042939: tripeptide transport6.97E-04
39GO:1902000: homogentisate catabolic process6.97E-04
40GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine6.97E-04
41GO:0006996: organelle organization6.97E-04
42GO:0051592: response to calcium ion6.97E-04
43GO:0031648: protein destabilization6.97E-04
44GO:0009615: response to virus7.02E-04
45GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1.13E-03
46GO:0009072: aromatic amino acid family metabolic process1.13E-03
47GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.13E-03
48GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.13E-03
49GO:0002230: positive regulation of defense response to virus by host1.13E-03
50GO:0006556: S-adenosylmethionine biosynthetic process1.13E-03
51GO:0010351: lithium ion transport1.13E-03
52GO:0006011: UDP-glucose metabolic process1.13E-03
53GO:0010272: response to silver ion1.13E-03
54GO:0045454: cell redox homeostasis1.41E-03
55GO:0033014: tetrapyrrole biosynthetic process1.62E-03
56GO:1902290: positive regulation of defense response to oomycetes1.62E-03
57GO:0006882: cellular zinc ion homeostasis1.62E-03
58GO:0001676: long-chain fatty acid metabolic process1.62E-03
59GO:0010116: positive regulation of abscisic acid biosynthetic process1.62E-03
60GO:0048194: Golgi vesicle budding1.62E-03
61GO:0033356: UDP-L-arabinose metabolic process2.18E-03
62GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA2.18E-03
63GO:0080142: regulation of salicylic acid biosynthetic process2.18E-03
64GO:0042938: dipeptide transport2.18E-03
65GO:0046345: abscisic acid catabolic process2.18E-03
66GO:0009617: response to bacterium2.19E-03
67GO:0009697: salicylic acid biosynthetic process2.78E-03
68GO:0030041: actin filament polymerization2.78E-03
69GO:0006097: glyoxylate cycle2.78E-03
70GO:0006461: protein complex assembly2.78E-03
71GO:0043248: proteasome assembly3.43E-03
72GO:0018258: protein O-linked glycosylation via hydroxyproline3.43E-03
73GO:0002238: response to molecule of fungal origin3.43E-03
74GO:0010405: arabinogalactan protein metabolic process3.43E-03
75GO:0009620: response to fungus3.70E-03
76GO:0055114: oxidation-reduction process3.87E-03
77GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response4.13E-03
78GO:0010555: response to mannitol4.13E-03
79GO:2000067: regulation of root morphogenesis4.13E-03
80GO:0030163: protein catabolic process4.34E-03
81GO:0006744: ubiquinone biosynthetic process4.87E-03
82GO:1900056: negative regulation of leaf senescence4.87E-03
83GO:0000338: protein deneddylation4.87E-03
84GO:0030026: cellular manganese ion homeostasis4.87E-03
85GO:1900057: positive regulation of leaf senescence4.87E-03
86GO:1902074: response to salt4.87E-03
87GO:0009738: abscisic acid-activated signaling pathway5.28E-03
88GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline5.66E-03
89GO:0043068: positive regulation of programmed cell death5.66E-03
90GO:0006605: protein targeting5.66E-03
91GO:0006102: isocitrate metabolic process5.66E-03
92GO:0006644: phospholipid metabolic process5.66E-03
93GO:0009627: systemic acquired resistance6.15E-03
94GO:0015996: chlorophyll catabolic process6.49E-03
95GO:0007186: G-protein coupled receptor signaling pathway6.49E-03
96GO:0017004: cytochrome complex assembly6.49E-03
97GO:0006972: hyperosmotic response6.49E-03
98GO:0009817: defense response to fungus, incompatible interaction7.19E-03
99GO:0009821: alkaloid biosynthetic process7.36E-03
100GO:0006783: heme biosynthetic process7.36E-03
101GO:0010112: regulation of systemic acquired resistance7.36E-03
102GO:0006633: fatty acid biosynthetic process7.39E-03
103GO:0016042: lipid catabolic process7.83E-03
104GO:0040008: regulation of growth7.86E-03
105GO:0009407: toxin catabolic process7.93E-03
106GO:0043067: regulation of programmed cell death8.27E-03
107GO:0030042: actin filament depolymerization8.27E-03
108GO:0048354: mucilage biosynthetic process involved in seed coat development8.27E-03
109GO:1900426: positive regulation of defense response to bacterium8.27E-03
110GO:0007568: aging8.31E-03
111GO:0055062: phosphate ion homeostasis9.22E-03
112GO:0006896: Golgi to vacuole transport9.22E-03
113GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process9.62E-03
114GO:0007166: cell surface receptor signaling pathway9.89E-03
115GO:0015031: protein transport9.93E-03
116GO:0000272: polysaccharide catabolic process1.02E-02
117GO:0009750: response to fructose1.02E-02
118GO:0030148: sphingolipid biosynthetic process1.02E-02
119GO:0009651: response to salt stress1.06E-02
120GO:0012501: programmed cell death1.12E-02
121GO:0015706: nitrate transport1.12E-02
122GO:0002213: defense response to insect1.12E-02
123GO:0000266: mitochondrial fission1.12E-02
124GO:0010588: cotyledon vascular tissue pattern formation1.23E-02
125GO:0006626: protein targeting to mitochondrion1.23E-02
126GO:0006807: nitrogen compound metabolic process1.23E-02
127GO:0006094: gluconeogenesis1.23E-02
128GO:0009636: response to toxic substance1.33E-02
129GO:0010143: cutin biosynthetic process1.34E-02
130GO:0002237: response to molecule of bacterial origin1.34E-02
131GO:0016310: phosphorylation1.36E-02
132GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.43E-02
133GO:0042343: indole glucosinolate metabolic process1.45E-02
134GO:0010167: response to nitrate1.45E-02
135GO:0046688: response to copper ion1.45E-02
136GO:0070588: calcium ion transmembrane transport1.45E-02
137GO:0009846: pollen germination1.48E-02
138GO:0010025: wax biosynthetic process1.57E-02
139GO:0034976: response to endoplasmic reticulum stress1.57E-02
140GO:0006364: rRNA processing1.59E-02
141GO:0000027: ribosomal large subunit assembly1.69E-02
142GO:0030150: protein import into mitochondrial matrix1.69E-02
143GO:0006825: copper ion transport1.81E-02
144GO:0006096: glycolytic process1.88E-02
145GO:0098542: defense response to other organism1.94E-02
146GO:0010200: response to chitin1.99E-02
147GO:0009611: response to wounding2.01E-02
148GO:0030433: ubiquitin-dependent ERAD pathway2.07E-02
149GO:0006730: one-carbon metabolic process2.07E-02
150GO:0031348: negative regulation of defense response2.07E-02
151GO:0080092: regulation of pollen tube growth2.07E-02
152GO:0044550: secondary metabolite biosynthetic process2.12E-02
153GO:0006508: proteolysis2.17E-02
154GO:0009553: embryo sac development2.20E-02
155GO:0009693: ethylene biosynthetic process2.20E-02
156GO:0010227: floral organ abscission2.20E-02
157GO:0006012: galactose metabolic process2.20E-02
158GO:0018105: peptidyl-serine phosphorylation2.34E-02
159GO:0042391: regulation of membrane potential2.61E-02
160GO:0010087: phloem or xylem histogenesis2.61E-02
161GO:0010305: leaf vascular tissue pattern formation2.75E-02
162GO:0048544: recognition of pollen2.90E-02
163GO:0006814: sodium ion transport2.90E-02
164GO:0042752: regulation of circadian rhythm2.90E-02
165GO:0009646: response to absence of light2.90E-02
166GO:0009058: biosynthetic process3.00E-02
167GO:0010183: pollen tube guidance3.05E-02
168GO:0009749: response to glucose3.05E-02
169GO:0009751: response to salicylic acid3.06E-02
170GO:0006629: lipid metabolic process3.11E-02
171GO:0000302: response to reactive oxygen species3.20E-02
172GO:0010193: response to ozone3.20E-02
173GO:0006952: defense response3.28E-02
174GO:0009753: response to jasmonic acid3.39E-02
175GO:0071281: cellular response to iron ion3.51E-02
176GO:0009816: defense response to bacterium, incompatible interaction4.33E-02
177GO:0042128: nitrate assimilation4.50E-02
178GO:0015995: chlorophyll biosynthetic process4.67E-02
179GO:0006950: response to stress4.67E-02
RankGO TermAdjusted P value
1GO:0004164: diphthine synthase activity0.00E+00
2GO:0051670: inulinase activity0.00E+00
3GO:0070577: lysine-acetylated histone binding0.00E+00
4GO:0050220: prostaglandin-E synthase activity0.00E+00
5GO:0016504: peptidase activator activity0.00E+00
6GO:0016034: maleylacetoacetate isomerase activity0.00E+00
7GO:0102391: decanoate--CoA ligase activity2.91E-08
8GO:0004467: long-chain fatty acid-CoA ligase activity5.72E-08
9GO:0005524: ATP binding6.29E-07
10GO:0004674: protein serine/threonine kinase activity2.33E-05
11GO:0004040: amidase activity1.03E-04
12GO:0005496: steroid binding1.03E-04
13GO:0051669: fructan beta-fructosidase activity3.19E-04
14GO:0004325: ferrochelatase activity3.19E-04
15GO:0031219: levanase activity3.19E-04
16GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity3.19E-04
17GO:0031957: very long-chain fatty acid-CoA ligase activity3.19E-04
18GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity3.19E-04
19GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity3.19E-04
20GO:0016301: kinase activity3.36E-04
21GO:0009055: electron carrier activity5.70E-04
22GO:0004568: chitinase activity6.75E-04
23GO:0045140: inositol phosphoceramide synthase activity6.97E-04
24GO:0004775: succinate-CoA ligase (ADP-forming) activity6.97E-04
25GO:0043141: ATP-dependent 5'-3' DNA helicase activity6.97E-04
26GO:0015036: disulfide oxidoreductase activity6.97E-04
27GO:0050736: O-malonyltransferase activity6.97E-04
28GO:0042937: tripeptide transporter activity6.97E-04
29GO:0004776: succinate-CoA ligase (GDP-forming) activity6.97E-04
30GO:0004103: choline kinase activity6.97E-04
31GO:0004634: phosphopyruvate hydratase activity6.97E-04
32GO:0003994: aconitate hydratase activity6.97E-04
33GO:0015035: protein disulfide oxidoreductase activity7.67E-04
34GO:0008794: arsenate reductase (glutaredoxin) activity7.78E-04
35GO:0004683: calmodulin-dependent protein kinase activity8.61E-04
36GO:0005516: calmodulin binding1.02E-03
37GO:0016531: copper chaperone activity1.13E-03
38GO:0031683: G-protein beta/gamma-subunit complex binding1.13E-03
39GO:0016805: dipeptidase activity1.13E-03
40GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.13E-03
41GO:0004478: methionine adenosyltransferase activity1.13E-03
42GO:0001664: G-protein coupled receptor binding1.13E-03
43GO:0008430: selenium binding1.13E-03
44GO:0004970: ionotropic glutamate receptor activity1.26E-03
45GO:0005217: intracellular ligand-gated ion channel activity1.26E-03
46GO:0004190: aspartic-type endopeptidase activity1.26E-03
47GO:0004108: citrate (Si)-synthase activity1.62E-03
48GO:0004364: glutathione transferase activity1.72E-03
49GO:0015369: calcium:proton antiporter activity2.18E-03
50GO:0070628: proteasome binding2.18E-03
51GO:0015368: calcium:cation antiporter activity2.18E-03
52GO:0042936: dipeptide transporter activity2.18E-03
53GO:0005507: copper ion binding3.11E-03
54GO:0004332: fructose-bisphosphate aldolase activity3.43E-03
55GO:0047714: galactolipase activity3.43E-03
56GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity3.43E-03
57GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity3.43E-03
58GO:1990714: hydroxyproline O-galactosyltransferase activity3.43E-03
59GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.13E-03
60GO:0004012: phospholipid-translocating ATPase activity4.13E-03
61GO:0004656: procollagen-proline 4-dioxygenase activity4.13E-03
62GO:0003978: UDP-glucose 4-epimerase activity4.13E-03
63GO:0008235: metalloexopeptidase activity4.87E-03
64GO:0008121: ubiquinol-cytochrome-c reductase activity4.87E-03
65GO:0004620: phospholipase activity4.87E-03
66GO:0061630: ubiquitin protein ligase activity4.89E-03
67GO:0052747: sinapyl alcohol dehydrogenase activity5.66E-03
68GO:0015491: cation:cation antiporter activity5.66E-03
69GO:0004714: transmembrane receptor protein tyrosine kinase activity5.66E-03
70GO:0009931: calcium-dependent protein serine/threonine kinase activity6.15E-03
71GO:0004806: triglyceride lipase activity6.48E-03
72GO:0008970: phosphatidylcholine 1-acylhydrolase activity6.49E-03
73GO:0003678: DNA helicase activity7.36E-03
74GO:0047617: acyl-CoA hydrolase activity8.27E-03
75GO:0016844: strictosidine synthase activity8.27E-03
76GO:0015112: nitrate transmembrane transporter activity8.27E-03
77GO:0016614: oxidoreductase activity, acting on CH-OH group of donors8.31E-03
78GO:0004177: aminopeptidase activity1.02E-02
79GO:0045551: cinnamyl-alcohol dehydrogenase activity1.12E-02
80GO:0008378: galactosyltransferase activity1.12E-02
81GO:0005388: calcium-transporting ATPase activity1.23E-02
82GO:0004022: alcohol dehydrogenase (NAD) activity1.23E-02
83GO:0015266: protein channel activity1.23E-02
84GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.23E-02
85GO:0005262: calcium channel activity1.23E-02
86GO:0005198: structural molecule activity1.33E-02
87GO:0004175: endopeptidase activity1.34E-02
88GO:0030553: cGMP binding1.45E-02
89GO:0008061: chitin binding1.45E-02
90GO:0030552: cAMP binding1.45E-02
91GO:0005509: calcium ion binding1.65E-02
92GO:0016298: lipase activity1.65E-02
93GO:0031418: L-ascorbic acid binding1.69E-02
94GO:0003954: NADH dehydrogenase activity1.69E-02
95GO:0031625: ubiquitin protein ligase binding1.76E-02
96GO:0005216: ion channel activity1.81E-02
97GO:0004298: threonine-type endopeptidase activity1.94E-02
98GO:0000166: nucleotide binding1.94E-02
99GO:0016779: nucleotidyltransferase activity2.07E-02
100GO:0052689: carboxylic ester hydrolase activity2.17E-02
101GO:0003779: actin binding2.20E-02
102GO:0003756: protein disulfide isomerase activity2.33E-02
103GO:0047134: protein-disulfide reductase activity2.47E-02
104GO:0030551: cyclic nucleotide binding2.61E-02
105GO:0016740: transferase activity2.61E-02
106GO:0005249: voltage-gated potassium channel activity2.61E-02
107GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.64E-02
108GO:0016787: hydrolase activity2.68E-02
109GO:0016758: transferase activity, transferring hexosyl groups2.77E-02
110GO:0004791: thioredoxin-disulfide reductase activity2.90E-02
111GO:0004252: serine-type endopeptidase activity3.16E-02
112GO:0004842: ubiquitin-protein transferase activity3.27E-02
113GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.65E-02
114GO:0020037: heme binding4.06E-02
115GO:0008194: UDP-glycosyltransferase activity4.38E-02
116GO:0030247: polysaccharide binding4.67E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
3GO:0034455: t-UTP complex0.00E+00
4GO:0005886: plasma membrane8.09E-09
5GO:0005783: endoplasmic reticulum1.01E-07
6GO:0005829: cytosol1.22E-05
7GO:0005911: cell-cell junction3.19E-04
8GO:0045252: oxoglutarate dehydrogenase complex3.19E-04
9GO:0016021: integral component of membrane3.29E-04
10GO:0031304: intrinsic component of mitochondrial inner membrane6.97E-04
11GO:0000015: phosphopyruvate hydratase complex6.97E-04
12GO:0031314: extrinsic component of mitochondrial inner membrane6.97E-04
13GO:0030658: transport vesicle membrane1.62E-03
14GO:0031461: cullin-RING ubiquitin ligase complex1.62E-03
15GO:0005839: proteasome core complex1.89E-03
16GO:0005794: Golgi apparatus2.07E-03
17GO:0030660: Golgi-associated vesicle membrane2.18E-03
18GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane2.18E-03
19GO:0005746: mitochondrial respiratory chain2.78E-03
20GO:0000794: condensed nuclear chromosome4.87E-03
21GO:0005773: vacuole5.52E-03
22GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane5.66E-03
23GO:0031305: integral component of mitochondrial inner membrane5.66E-03
24GO:0009524: phragmoplast5.91E-03
25GO:0019773: proteasome core complex, alpha-subunit complex6.49E-03
26GO:0000326: protein storage vacuole6.49E-03
27GO:0008180: COP9 signalosome7.36E-03
28GO:0005740: mitochondrial envelope9.22E-03
29GO:0005819: spindle9.96E-03
30GO:0005765: lysosomal membrane1.02E-02
31GO:0008541: proteasome regulatory particle, lid subcomplex1.02E-02
32GO:0005750: mitochondrial respiratory chain complex III1.34E-02
33GO:0030176: integral component of endoplasmic reticulum membrane1.45E-02
34GO:0000502: proteasome complex1.59E-02
35GO:0005758: mitochondrial intermembrane space1.69E-02
36GO:0005730: nucleolus1.72E-02
37GO:0005741: mitochondrial outer membrane1.94E-02
38GO:0005834: heterotrimeric G-protein complex2.01E-02
39GO:0015629: actin cytoskeleton2.20E-02
40GO:0005744: mitochondrial inner membrane presequence translocase complex2.33E-02
41GO:0005777: peroxisome2.39E-02
42GO:0030136: clathrin-coated vesicle2.47E-02
43GO:0005774: vacuolar membrane2.78E-02
44GO:0019898: extrinsic component of membrane3.05E-02
45GO:0048046: apoplast3.07E-02
46GO:0005737: cytoplasm3.63E-02
47GO:0032580: Golgi cisterna membrane3.67E-02
48GO:0005789: endoplasmic reticulum membrane3.85E-02
49GO:0000932: P-body4.16E-02
50GO:0005788: endoplasmic reticulum lumen4.33E-02
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Gene type



Gene DE type