Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G27480

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0042820: vitamin B6 catabolic process0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0090042: tubulin deacetylation0.00E+00
8GO:0015882: L-ascorbic acid transport0.00E+00
9GO:0009658: chloroplast organization4.53E-10
10GO:0009773: photosynthetic electron transport in photosystem I1.22E-08
11GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.76E-07
12GO:0019464: glycine decarboxylation via glycine cleavage system5.13E-07
13GO:0006810: transport9.75E-07
14GO:0010275: NAD(P)H dehydrogenase complex assembly4.70E-06
15GO:1902326: positive regulation of chlorophyll biosynthetic process4.70E-06
16GO:0071482: cellular response to light stimulus1.35E-05
17GO:0009657: plastid organization1.35E-05
18GO:0009853: photorespiration1.36E-05
19GO:0015979: photosynthesis4.95E-05
20GO:0009767: photosynthetic electron transport chain6.40E-05
21GO:0006546: glycine catabolic process6.61E-05
22GO:0019253: reductive pentose-phosphate cycle7.75E-05
23GO:0010207: photosystem II assembly7.75E-05
24GO:0010020: chloroplast fission7.75E-05
25GO:0018298: protein-chromophore linkage1.14E-04
26GO:0042549: photosystem II stabilization1.50E-04
27GO:0010190: cytochrome b6f complex assembly1.50E-04
28GO:0042026: protein refolding2.05E-04
29GO:0010196: nonphotochemical quenching2.67E-04
30GO:0016117: carotenoid biosynthetic process2.74E-04
31GO:1904964: positive regulation of phytol biosynthetic process3.22E-04
32GO:0033481: galacturonate biosynthetic process3.22E-04
33GO:0010028: xanthophyll cycle3.22E-04
34GO:0000023: maltose metabolic process3.22E-04
35GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.22E-04
36GO:0009443: pyridoxal 5'-phosphate salvage3.22E-04
37GO:1904966: positive regulation of vitamin E biosynthetic process3.22E-04
38GO:0048564: photosystem I assembly3.36E-04
39GO:0032544: plastid translation4.12E-04
40GO:0046686: response to cadmium ion5.92E-04
41GO:0045036: protein targeting to chloroplast6.82E-04
42GO:0097054: L-glutamate biosynthetic process7.02E-04
43GO:1904143: positive regulation of carotenoid biosynthetic process7.02E-04
44GO:0080183: response to photooxidative stress7.02E-04
45GO:0030388: fructose 1,6-bisphosphate metabolic process7.02E-04
46GO:0010270: photosystem II oxygen evolving complex assembly7.02E-04
47GO:0009629: response to gravity7.02E-04
48GO:0007154: cell communication7.02E-04
49GO:0010027: thylakoid membrane organization7.12E-04
50GO:0006415: translational termination7.88E-04
51GO:0018119: peptidyl-cysteine S-nitrosylation7.88E-04
52GO:0006352: DNA-templated transcription, initiation7.88E-04
53GO:0006094: gluconeogenesis1.02E-03
54GO:0055114: oxidation-reduction process1.03E-03
55GO:0006696: ergosterol biosynthetic process1.14E-03
56GO:0090506: axillary shoot meristem initiation1.14E-03
57GO:0006000: fructose metabolic process1.14E-03
58GO:0006518: peptide metabolic process1.14E-03
59GO:0051604: protein maturation1.14E-03
60GO:0090351: seedling development1.28E-03
61GO:0009409: response to cold1.28E-03
62GO:0043572: plastid fission1.63E-03
63GO:0016556: mRNA modification1.63E-03
64GO:2001141: regulation of RNA biosynthetic process1.63E-03
65GO:0051085: chaperone mediated protein folding requiring cofactor1.63E-03
66GO:0010239: chloroplast mRNA processing1.63E-03
67GO:0006537: glutamate biosynthetic process1.63E-03
68GO:0033014: tetrapyrrole biosynthetic process1.63E-03
69GO:0010731: protein glutathionylation1.63E-03
70GO:0009768: photosynthesis, light harvesting in photosystem I1.74E-03
71GO:0061077: chaperone-mediated protein folding1.91E-03
72GO:0006730: one-carbon metabolic process2.09E-03
73GO:0080092: regulation of pollen tube growth2.09E-03
74GO:0009636: response to toxic substance2.13E-03
75GO:0019676: ammonia assimilation cycle2.19E-03
76GO:0045727: positive regulation of translation2.19E-03
77GO:0071483: cellular response to blue light2.19E-03
78GO:0009902: chloroplast relocation2.19E-03
79GO:0043097: pyrimidine nucleoside salvage2.80E-03
80GO:0006461: protein complex assembly2.80E-03
81GO:0016123: xanthophyll biosynthetic process2.80E-03
82GO:0080110: sporopollenin biosynthetic process2.80E-03
83GO:0010236: plastoquinone biosynthetic process2.80E-03
84GO:0006544: glycine metabolic process2.80E-03
85GO:0042631: cellular response to water deprivation2.89E-03
86GO:0009741: response to brassinosteroid3.12E-03
87GO:0006096: glycolytic process3.33E-03
88GO:0006563: L-serine metabolic process3.46E-03
89GO:0010304: PSII associated light-harvesting complex II catabolic process3.46E-03
90GO:0070814: hydrogen sulfide biosynthetic process3.46E-03
91GO:0010358: leaf shaping3.46E-03
92GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.46E-03
93GO:0006828: manganese ion transport3.46E-03
94GO:0006206: pyrimidine nucleobase metabolic process3.46E-03
95GO:0009791: post-embryonic development3.60E-03
96GO:0009854: oxidative photosynthetic carbon pathway4.17E-03
97GO:0006458: 'de novo' protein folding4.17E-03
98GO:0010067: procambium histogenesis4.17E-03
99GO:1901259: chloroplast rRNA processing4.17E-03
100GO:0080167: response to karrikin4.60E-03
101GO:0006826: iron ion transport4.92E-03
102GO:0009645: response to low light intensity stimulus4.92E-03
103GO:0006400: tRNA modification4.92E-03
104GO:0050829: defense response to Gram-negative bacterium4.92E-03
105GO:0016559: peroxisome fission5.71E-03
106GO:0009416: response to light stimulus5.71E-03
107GO:0008610: lipid biosynthetic process5.71E-03
108GO:0009704: de-etiolation5.71E-03
109GO:0017004: cytochrome complex assembly6.55E-03
110GO:0006002: fructose 6-phosphate metabolic process6.55E-03
111GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.55E-03
112GO:0000373: Group II intron splicing7.42E-03
113GO:0000902: cell morphogenesis7.42E-03
114GO:0098656: anion transmembrane transport7.42E-03
115GO:0010206: photosystem II repair7.42E-03
116GO:0006098: pentose-phosphate shunt7.42E-03
117GO:0006783: heme biosynthetic process7.42E-03
118GO:0009407: toxin catabolic process8.02E-03
119GO:0010205: photoinhibition8.34E-03
120GO:0006779: porphyrin-containing compound biosynthetic process8.34E-03
121GO:0035999: tetrahydrofolate interconversion8.34E-03
122GO:1900865: chloroplast RNA modification8.34E-03
123GO:0007623: circadian rhythm8.46E-03
124GO:0006457: protein folding8.96E-03
125GO:0009970: cellular response to sulfate starvation9.30E-03
126GO:0006535: cysteine biosynthetic process from serine9.30E-03
127GO:0000103: sulfate assimilation9.30E-03
128GO:0019684: photosynthesis, light reaction1.03E-02
129GO:0006816: calcium ion transport1.03E-02
130GO:0000272: polysaccharide catabolic process1.03E-02
131GO:0006631: fatty acid metabolic process1.10E-02
132GO:0005983: starch catabolic process1.13E-02
133GO:0045037: protein import into chloroplast stroma1.13E-02
134GO:0009744: response to sucrose1.19E-02
135GO:0005986: sucrose biosynthetic process1.24E-02
136GO:0006006: glucose metabolic process1.24E-02
137GO:0010223: secondary shoot formation1.35E-02
138GO:0009225: nucleotide-sugar metabolic process1.46E-02
139GO:0007031: peroxisome organization1.46E-02
140GO:0042343: indole glucosinolate metabolic process1.46E-02
141GO:0010039: response to iron ion1.46E-02
142GO:0019762: glucosinolate catabolic process1.58E-02
143GO:0019344: cysteine biosynthetic process1.70E-02
144GO:0009735: response to cytokinin1.73E-02
145GO:0016575: histone deacetylation1.83E-02
146GO:0006418: tRNA aminoacylation for protein translation1.83E-02
147GO:0042742: defense response to bacterium1.94E-02
148GO:0098542: defense response to other organism1.95E-02
149GO:0007005: mitochondrion organization2.08E-02
150GO:0016226: iron-sulfur cluster assembly2.08E-02
151GO:0001944: vasculature development2.22E-02
152GO:0006508: proteolysis2.23E-02
153GO:0010089: xylem development2.35E-02
154GO:0010584: pollen exine formation2.35E-02
155GO:0010087: phloem or xylem histogenesis2.63E-02
156GO:0048868: pollen tube development2.78E-02
157GO:0010268: brassinosteroid homeostasis2.78E-02
158GO:0008360: regulation of cell shape2.78E-02
159GO:0006814: sodium ion transport2.92E-02
160GO:0009646: response to absence of light2.92E-02
161GO:0032259: methylation2.99E-02
162GO:0019252: starch biosynthetic process3.07E-02
163GO:0016132: brassinosteroid biosynthetic process3.23E-02
164GO:0080156: mitochondrial mRNA modification3.23E-02
165GO:0032502: developmental process3.38E-02
166GO:0007264: small GTPase mediated signal transduction3.38E-02
167GO:0016032: viral process3.38E-02
168GO:0009753: response to jasmonic acid3.44E-02
169GO:0010090: trichome morphogenesis3.54E-02
170GO:0030163: protein catabolic process3.54E-02
171GO:0016125: sterol metabolic process3.70E-02
172GO:0010286: heat acclimation3.86E-02
173GO:0071805: potassium ion transmembrane transport3.86E-02
174GO:0005975: carbohydrate metabolic process3.89E-02
175GO:0001666: response to hypoxia4.19E-02
176GO:0009816: defense response to bacterium, incompatible interaction4.36E-02
177GO:0009627: systemic acquired resistance4.53E-02
178GO:0042128: nitrate assimilation4.53E-02
RankGO TermAdjusted P value
1GO:0046905: phytoene synthase activity0.00E+00
2GO:0008465: glycerate dehydrogenase activity0.00E+00
3GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
4GO:0051738: xanthophyll binding0.00E+00
5GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
6GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
7GO:0019144: ADP-sugar diphosphatase activity0.00E+00
8GO:0005363: maltose transmembrane transporter activity0.00E+00
9GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
10GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
11GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
12GO:0043014: alpha-tubulin binding0.00E+00
13GO:0008974: phosphoribulokinase activity0.00E+00
14GO:0051721: protein phosphatase 2A binding0.00E+00
15GO:0015229: L-ascorbic acid transporter activity0.00E+00
16GO:0042903: tubulin deacetylase activity0.00E+00
17GO:0004822: isoleucine-tRNA ligase activity0.00E+00
18GO:0004222: metalloendopeptidase activity4.25E-07
19GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.13E-07
20GO:0004326: tetrahydrofolylpolyglutamate synthase activity4.70E-06
21GO:0004033: aldo-keto reductase (NADP) activity9.40E-06
22GO:0051082: unfolded protein binding1.03E-05
23GO:0004375: glycine dehydrogenase (decarboxylating) activity3.71E-05
24GO:0016149: translation release factor activity, codon specific3.71E-05
25GO:0031072: heat shock protein binding6.40E-05
26GO:0001053: plastid sigma factor activity6.61E-05
27GO:0016987: sigma factor activity6.61E-05
28GO:0016168: chlorophyll binding7.77E-05
29GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.05E-04
30GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.05E-04
31GO:0016041: glutamate synthase (ferredoxin) activity3.22E-04
32GO:0030941: chloroplast targeting sequence binding3.22E-04
33GO:0010012: steroid 22-alpha hydroxylase activity3.22E-04
34GO:0009496: plastoquinol--plastocyanin reductase activity3.22E-04
35GO:0080042: ADP-glucose pyrophosphohydrolase activity3.22E-04
36GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.22E-04
37GO:0003867: 4-aminobutyrate transaminase activity3.22E-04
38GO:0004325: ferrochelatase activity3.22E-04
39GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.22E-04
40GO:0051996: squalene synthase activity3.22E-04
41GO:0048038: quinone binding4.44E-04
42GO:0003747: translation release factor activity4.95E-04
43GO:0008237: metallopeptidase activity6.14E-04
44GO:0008967: phosphoglycolate phosphatase activity7.02E-04
45GO:0050017: L-3-cyanoalanine synthase activity7.02E-04
46GO:0010291: carotene beta-ring hydroxylase activity7.02E-04
47GO:0080041: ADP-ribose pyrophosphohydrolase activity7.02E-04
48GO:0010297: heteropolysaccharide binding7.02E-04
49GO:0004047: aminomethyltransferase activity7.02E-04
50GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.02E-04
51GO:0004802: transketolase activity7.02E-04
52GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.02E-04
53GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.02E-04
54GO:0044183: protein binding involved in protein folding7.88E-04
55GO:0005089: Rho guanyl-nucleotide exchange factor activity7.88E-04
56GO:0030267: glyoxylate reductase (NADP) activity1.14E-03
57GO:0004781: sulfate adenylyltransferase (ATP) activity1.14E-03
58GO:0008266: poly(U) RNA binding1.14E-03
59GO:0070402: NADPH binding1.14E-03
60GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.14E-03
61GO:0070330: aromatase activity1.14E-03
62GO:0003913: DNA photolyase activity1.14E-03
63GO:0002161: aminoacyl-tRNA editing activity1.14E-03
64GO:0004148: dihydrolipoyl dehydrogenase activity1.14E-03
65GO:0031409: pigment binding1.42E-03
66GO:0005528: FK506 binding1.57E-03
67GO:0004300: enoyl-CoA hydratase activity1.63E-03
68GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.63E-03
69GO:0008508: bile acid:sodium symporter activity1.63E-03
70GO:0048487: beta-tubulin binding1.63E-03
71GO:0015079: potassium ion transmembrane transporter activity1.74E-03
72GO:0004364: glutathione transferase activity1.75E-03
73GO:0004176: ATP-dependent peptidase activity1.91E-03
74GO:0051537: 2 iron, 2 sulfur cluster binding2.03E-03
75GO:0005198: structural molecule activity2.13E-03
76GO:0051861: glycolipid binding2.19E-03
77GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.19E-03
78GO:0050378: UDP-glucuronate 4-epimerase activity2.19E-03
79GO:0043495: protein anchor2.19E-03
80GO:0046872: metal ion binding2.20E-03
81GO:0022891: substrate-specific transmembrane transporter activity2.28E-03
82GO:0003824: catalytic activity2.46E-03
83GO:0051538: 3 iron, 4 sulfur cluster binding2.80E-03
84GO:0004372: glycine hydroxymethyltransferase activity2.80E-03
85GO:0018685: alkane 1-monooxygenase activity2.80E-03
86GO:0050662: coenzyme binding3.35E-03
87GO:0005515: protein binding3.35E-03
88GO:0042578: phosphoric ester hydrolase activity3.46E-03
89GO:0080030: methyl indole-3-acetate esterase activity3.46E-03
90GO:0004332: fructose-bisphosphate aldolase activity3.46E-03
91GO:0004124: cysteine synthase activity4.17E-03
92GO:0004849: uridine kinase activity4.17E-03
93GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.17E-03
94GO:0009881: photoreceptor activity4.92E-03
95GO:0019899: enzyme binding4.92E-03
96GO:0043295: glutathione binding4.92E-03
97GO:0019843: rRNA binding5.61E-03
98GO:0008135: translation factor activity, RNA binding6.55E-03
99GO:0003843: 1,3-beta-D-glucan synthase activity6.55E-03
100GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.55E-03
101GO:0003924: GTPase activity8.33E-03
102GO:0005384: manganese ion transmembrane transporter activity8.34E-03
103GO:0030234: enzyme regulator activity9.30E-03
104GO:0047372: acylglycerol lipase activity1.03E-02
105GO:0015386: potassium:proton antiporter activity1.03E-02
106GO:0016787: hydrolase activity1.05E-02
107GO:0016491: oxidoreductase activity1.09E-02
108GO:0000049: tRNA binding1.13E-02
109GO:0042802: identical protein binding1.15E-02
110GO:0015095: magnesium ion transmembrane transporter activity1.24E-02
111GO:0004565: beta-galactosidase activity1.24E-02
112GO:0005315: inorganic phosphate transmembrane transporter activity1.24E-02
113GO:0043621: protein self-association1.29E-02
114GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.35E-02
115GO:0005525: GTP binding1.36E-02
116GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.39E-02
117GO:0008168: methyltransferase activity1.41E-02
118GO:0051287: NAD binding1.45E-02
119GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.61E-02
120GO:0005509: calcium ion binding1.69E-02
121GO:0051536: iron-sulfur cluster binding1.70E-02
122GO:0004407: histone deacetylase activity1.70E-02
123GO:0043424: protein histidine kinase binding1.83E-02
124GO:0005506: iron ion binding1.89E-02
125GO:0033612: receptor serine/threonine kinase binding1.95E-02
126GO:0008514: organic anion transmembrane transporter activity2.35E-02
127GO:0003756: protein disulfide isomerase activity2.35E-02
128GO:0004812: aminoacyl-tRNA ligase activity2.49E-02
129GO:0005102: receptor binding2.49E-02
130GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.95E-02
131GO:0030170: pyridoxal phosphate binding3.19E-02
132GO:0019825: oxygen binding3.33E-02
133GO:0004519: endonuclease activity3.50E-02
134GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.54E-02
135GO:0016759: cellulose synthase activity3.70E-02
136GO:0008483: transaminase activity3.86E-02
137GO:0009931: calcium-dependent protein serine/threonine kinase activity4.53E-02
138GO:0004683: calmodulin-dependent protein kinase activity4.71E-02
139GO:0008236: serine-type peptidase activity4.88E-02
140GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.88E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast7.96E-65
4GO:0009535: chloroplast thylakoid membrane4.47E-35
5GO:0009941: chloroplast envelope8.12E-27
6GO:0009570: chloroplast stroma2.63E-23
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.44E-16
8GO:0009534: chloroplast thylakoid2.90E-12
9GO:0009579: thylakoid4.50E-10
10GO:0009706: chloroplast inner membrane3.33E-08
11GO:0009543: chloroplast thylakoid lumen1.44E-06
12GO:0030095: chloroplast photosystem II2.32E-06
13GO:0010319: stromule2.75E-06
14GO:0031969: chloroplast membrane3.66E-06
15GO:0009654: photosystem II oxygen evolving complex6.18E-06
16GO:0048046: apoplast2.17E-05
17GO:0009523: photosystem II2.97E-05
18GO:0005960: glycine cleavage complex3.71E-05
19GO:0055035: plastid thylakoid membrane1.04E-04
20GO:0042651: thylakoid membrane1.47E-04
21GO:0010287: plastoglobule1.56E-04
22GO:0009536: plastid3.08E-04
23GO:0009782: photosystem I antenna complex3.22E-04
24GO:0019898: extrinsic component of membrane4.06E-04
25GO:0000427: plastid-encoded plastid RNA polymerase complex7.02E-04
26GO:0030076: light-harvesting complex1.28E-03
27GO:0005759: mitochondrial matrix1.47E-03
28GO:0009532: plastid stroma1.91E-03
29GO:0009526: plastid envelope2.19E-03
30GO:0009517: PSII associated light-harvesting complex II2.19E-03
31GO:0009512: cytochrome b6f complex2.80E-03
32GO:0009533: chloroplast stromal thylakoid4.92E-03
33GO:0031359: integral component of chloroplast outer membrane4.92E-03
34GO:0005623: cell5.80E-03
35GO:0016020: membrane5.80E-03
36GO:0005779: integral component of peroxisomal membrane6.55E-03
37GO:0009539: photosystem II reaction center6.55E-03
38GO:0000148: 1,3-beta-D-glucan synthase complex6.55E-03
39GO:0009707: chloroplast outer membrane7.27E-03
40GO:0016324: apical plasma membrane9.30E-03
41GO:0031977: thylakoid lumen1.10E-02
42GO:0009508: plastid chromosome1.24E-02
43GO:0016021: integral component of membrane2.90E-02
44GO:0009522: photosystem I2.92E-02
45GO:0032580: Golgi cisterna membrane3.70E-02
46GO:0005778: peroxisomal membrane3.86E-02
47GO:0009295: nucleoid3.86E-02
48GO:0030529: intracellular ribonucleoprotein complex4.19E-02
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Gene type



Gene DE type