co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G25230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0042371: vitamin K biosynthetic process	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:1901698: response to nitrogen compound	0.00E+00
5	GO:0046620: regulation of organ growth	3.97E-11
6	GO:0009926: auxin polar transport	1.36E-09
7	GO:0042254: ribosome biogenesis	5.57E-07
8	GO:0009733: response to auxin	5.92E-06
9	GO:0006412: translation	1.45E-05
10	GO:0006833: water transport	2.15E-05
11	GO:0042372: phylloquinone biosynthetic process	6.42E-05
12	GO:0034220: ion transmembrane transport	6.82E-05
13	GO:0009734: auxin-activated signaling pathway	1.03E-04
14	GO:0043266: regulation of potassium ion transport	1.54E-04
15	GO:0000481: maturation of 5S rRNA	1.54E-04
16	GO:2000021: regulation of ion homeostasis	1.54E-04
17	GO:0034337: RNA folding	1.54E-04
18	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.54E-04
19	GO:0046520: sphingoid biosynthetic process	1.54E-04
20	GO:0010541: acropetal auxin transport	3.51E-04
21	GO:0001736: establishment of planar polarity	3.51E-04
22	GO:0031648: protein destabilization	3.51E-04
23	GO:0010207: photosystem II assembly	4.15E-04
24	GO:0015840: urea transport	5.75E-04
25	GO:0071705: nitrogen compound transport	5.75E-04
26	GO:0006518: peptide metabolic process	5.75E-04
27	GO:0080055: low-affinity nitrate transport	5.75E-04
28	GO:0010160: formation of animal organ boundary	5.75E-04
29	GO:0003333: amino acid transmembrane transport	6.92E-04
30	GO:0009650: UV protection	8.23E-04
31	GO:0051513: regulation of monopolar cell growth	8.23E-04
32	GO:0080170: hydrogen peroxide transmembrane transport	8.23E-04
33	GO:0043481: anthocyanin accumulation in tissues in response to UV light	8.23E-04
34	GO:0030104: water homeostasis	1.09E-03
35	GO:0071249: cellular response to nitrate	1.09E-03
36	GO:0009958: positive gravitropism	1.11E-03
37	GO:0055085: transmembrane transport	1.34E-03
38	GO:0010236: plastoquinone biosynthetic process	1.38E-03
39	GO:0016123: xanthophyll biosynthetic process	1.38E-03
40	GO:0060918: auxin transport	1.70E-03
41	GO:0006751: glutathione catabolic process	1.70E-03
42	GO:0042549: photosystem II stabilization	1.70E-03
43	GO:0010027: thylakoid membrane organization	1.96E-03
44	GO:0080086: stamen filament development	2.03E-03
45	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.03E-03
46	GO:0015995: chlorophyll biosynthetic process	2.30E-03
47	GO:0009610: response to symbiotic fungus	2.39E-03
48	GO:0009772: photosynthetic electron transport in photosystem II	2.39E-03
49	GO:1900056: negative regulation of leaf senescence	2.39E-03
50	GO:0030091: protein repair	2.77E-03
51	GO:0032508: DNA duplex unwinding	2.77E-03
52	GO:0007389: pattern specification process	3.16E-03
53	GO:0051865: protein autoubiquitination	3.58E-03
54	GO:0010206: photosystem II repair	3.58E-03
55	GO:0009051: pentose-phosphate shunt, oxidative branch	3.58E-03
56	GO:0006631: fatty acid metabolic process	3.81E-03
57	GO:0009638: phototropism	4.01E-03
58	GO:0009640: photomorphogenesis	4.13E-03
59	GO:0043069: negative regulation of programmed cell death	4.46E-03
60	GO:0048829: root cap development	4.46E-03
61	GO:0018119: peptidyl-cysteine S-nitrosylation	4.92E-03
62	GO:0048765: root hair cell differentiation	4.92E-03
63	GO:0009684: indoleacetic acid biosynthetic process	4.92E-03
64	GO:0010015: root morphogenesis	4.92E-03
65	GO:0015706: nitrate transport	5.41E-03
66	GO:0008361: regulation of cell size	5.41E-03
67	GO:0016024: CDP-diacylglycerol biosynthetic process	5.41E-03
68	GO:0006006: glucose metabolic process	5.91E-03
69	GO:0010540: basipetal auxin transport	6.42E-03
70	GO:0010143: cutin biosynthetic process	6.42E-03
71	GO:0010167: response to nitrate	6.95E-03
72	GO:0006869: lipid transport	7.11E-03
73	GO:0016042: lipid catabolic process	7.96E-03
74	GO:0000027: ribosomal large subunit assembly	8.05E-03
75	GO:2000022: regulation of jasmonic acid mediated signaling pathway	9.82E-03
76	GO:0009411: response to UV	1.04E-02
77	GO:0007165: signal transduction	1.09E-02
78	GO:0009306: protein secretion	1.11E-02
79	GO:0048443: stamen development	1.11E-02
80	GO:0006284: base-excision repair	1.11E-02
81	GO:0071555: cell wall organization	1.15E-02
82	GO:0000413: protein peptidyl-prolyl isomerization	1.24E-02
83	GO:0042335: cuticle development	1.24E-02
84	GO:0040008: regulation of growth	1.31E-02
85	GO:0045490: pectin catabolic process	1.37E-02
86	GO:0002229: defense response to oomycetes	1.52E-02
87	GO:0009735: response to cytokinin	1.53E-02
88	GO:0009630: gravitropism	1.59E-02
89	GO:0030163: protein catabolic process	1.66E-02
90	GO:0009639: response to red or far red light	1.74E-02
91	GO:0010252: auxin homeostasis	1.74E-02
92	GO:0016126: sterol biosynthetic process	1.97E-02
93	GO:0006810: transport	2.05E-02
94	GO:0009658: chloroplast organization	2.13E-02
95	GO:0010311: lateral root formation	2.46E-02
96	GO:0010218: response to far red light	2.55E-02
97	GO:0006811: ion transport	2.55E-02
98	GO:0048527: lateral root development	2.64E-02
99	GO:0007568: aging	2.64E-02
100	GO:0080167: response to karrikin	2.64E-02
101	GO:0006865: amino acid transport	2.72E-02
102	GO:0009637: response to blue light	2.81E-02
103	GO:0015979: photosynthesis	3.01E-02
104	GO:0030001: metal ion transport	3.09E-02
105	GO:0006281: DNA repair	3.89E-02
106	GO:0009664: plant-type cell wall organization	3.96E-02
107	GO:0042538: hyperosmotic salinity response	3.96E-02
108	GO:0009414: response to water deprivation	4.00E-02
109	GO:0048364: root development	4.05E-02
110	GO:0009585: red, far-red light phototransduction	4.17E-02
111	GO:0008152: metabolic process	4.28E-02
112	GO:0006857: oligopeptide transport	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
2	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
5	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0019843: rRNA binding	1.16E-09
8	GO:0003735: structural constituent of ribosome	1.13E-07
9	GO:0005528: FK506 binding	4.85E-07
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.72E-06
11	GO:0015250: water channel activity	8.63E-06
12	GO:0015200: methylammonium transmembrane transporter activity	1.54E-04
13	GO:0000170: sphingosine hydroxylase activity	1.54E-04
14	GO:0080132: fatty acid alpha-hydroxylase activity	1.54E-04
15	GO:0052689: carboxylic ester hydrolase activity	1.81E-04
16	GO:0003839: gamma-glutamylcyclotransferase activity	3.51E-04
17	GO:0042284: sphingolipid delta-4 desaturase activity	3.51E-04
18	GO:0010329: auxin efflux transmembrane transporter activity	3.67E-04
19	GO:0080054: low-affinity nitrate transmembrane transporter activity	5.75E-04
20	GO:0016851: magnesium chelatase activity	8.23E-04
21	GO:0030570: pectate lyase activity	8.23E-04
22	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.09E-03
23	GO:0015204: urea transmembrane transporter activity	1.09E-03
24	GO:0004659: prenyltransferase activity	1.09E-03
25	GO:0010011: auxin binding	1.09E-03
26	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.09E-03
27	GO:0010328: auxin influx transmembrane transporter activity	1.09E-03
28	GO:0052793: pectin acetylesterase activity	1.09E-03
29	GO:0004506: squalene monooxygenase activity	1.09E-03
30	GO:0008725: DNA-3-methyladenine glycosylase activity	1.38E-03
31	GO:0004040: amidase activity	1.38E-03
32	GO:0016829: lyase activity	1.62E-03
33	GO:0016791: phosphatase activity	1.64E-03
34	GO:0016208: AMP binding	1.70E-03
35	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.70E-03
36	GO:0008519: ammonium transmembrane transporter activity	1.70E-03
37	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.70E-03
38	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.03E-03
39	GO:0016788: hydrolase activity, acting on ester bonds	3.92E-03
40	GO:0009672: auxin:proton symporter activity	4.01E-03
41	GO:0015174: basic amino acid transmembrane transporter activity	4.01E-03
42	GO:0004565: beta-galactosidase activity	5.91E-03
43	GO:0015171: amino acid transmembrane transporter activity	6.15E-03
44	GO:0004650: polygalacturonase activity	7.22E-03
45	GO:0004707: MAP kinase activity	9.22E-03
46	GO:0008289: lipid binding	1.26E-02
47	GO:0008080: N-acetyltransferase activity	1.31E-02
48	GO:0005215: transporter activity	1.34E-02
49	GO:0019901: protein kinase binding	1.44E-02
50	GO:0008236: serine-type peptidase activity	2.29E-02
51	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.38E-02
52	GO:0005096: GTPase activator activity	2.46E-02
53	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.55E-02
54	GO:0004222: metalloendopeptidase activity	2.55E-02
55	GO:0003993: acid phosphatase activity	2.90E-02
56	GO:0050661: NADP binding	3.09E-02
57	GO:0004871: signal transducer activity	3.31E-02
58	GO:0043621: protein self-association	3.56E-02
59	GO:0035091: phosphatidylinositol binding	3.56E-02
60	GO:0015293: symporter activity	3.66E-02
61	GO:0003690: double-stranded DNA binding	4.27E-02
62	GO:0003777: microtubule motor activity	4.48E-02
63	GO:0003824: catalytic activity	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009570: chloroplast stroma	6.09E-12
3	GO:0009543: chloroplast thylakoid lumen	1.16E-09
4	GO:0009507: chloroplast	1.84E-09
5	GO:0031977: thylakoid lumen	4.23E-08
6	GO:0009941: chloroplast envelope	2.08E-07
7	GO:0009579: thylakoid	4.30E-07
8	GO:0005840: ribosome	4.69E-07
9	GO:0009535: chloroplast thylakoid membrane	1.78E-06
10	GO:0009534: chloroplast thylakoid	5.03E-06
11	GO:0005886: plasma membrane	2.29E-05
12	GO:0042807: central vacuole	8.59E-05
13	GO:0043674: columella	1.54E-04
14	GO:0009505: plant-type cell wall	3.07E-04
15	GO:0016020: membrane	4.27E-04
16	GO:0010007: magnesium chelatase complex	5.75E-04
17	GO:0009531: secondary cell wall	8.23E-04
18	GO:0031225: anchored component of membrane	1.92E-03
19	GO:0009705: plant-type vacuole membrane	2.20E-03
20	GO:0009986: cell surface	2.39E-03
21	GO:0009533: chloroplast stromal thylakoid	2.39E-03
22	GO:0005887: integral component of plasma membrane	2.64E-03
23	GO:0000326: protein storage vacuole	3.16E-03
24	GO:0008180: COP9 signalosome	3.58E-03
25	GO:0009506: plasmodesma	3.60E-03
26	GO:0031969: chloroplast membrane	5.03E-03
27	GO:0032040: small-subunit processome	5.41E-03
28	GO:0030095: chloroplast photosystem II	6.42E-03
29	GO:0005576: extracellular region	7.09E-03
30	GO:0009654: photosystem II oxygen evolving complex	8.63E-03
31	GO:0015935: small ribosomal subunit	9.22E-03
32	GO:0019898: extrinsic component of membrane	1.44E-02
33	GO:0005778: peroxisomal membrane	1.81E-02
34	GO:0019005: SCF ubiquitin ligase complex	2.38E-02
35	GO:0022625: cytosolic large ribosomal subunit	2.77E-02
36	GO:0005819: spindle	2.99E-02
37	GO:0005783: endoplasmic reticulum	3.37E-02
38	GO:0000502: proteasome complex	4.17E-02