co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G24170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901485: positive regulation of transcription factor catabolic process	0.00E+00
2	GO:0031508: pericentric heterochromatin assembly	0.00E+00
3	GO:0045489: pectin biosynthetic process	8.28E-08
4	GO:0010424: DNA methylation on cytosine within a CG sequence	1.54E-07
5	GO:0000271: polysaccharide biosynthetic process	6.03E-06
6	GO:0033481: galacturonate biosynthetic process	5.03E-05
7	GO:0019354: siroheme biosynthetic process	5.03E-05
8	GO:0010216: maintenance of DNA methylation	5.51E-05
9	GO:0042546: cell wall biogenesis	6.53E-05
10	GO:0090309: positive regulation of methylation-dependent chromatin silencing	1.23E-04
11	GO:0010069: zygote asymmetric cytokinesis in embryo sac	1.23E-04
12	GO:0071555: cell wall organization	2.00E-04
13	GO:0006556: S-adenosylmethionine biosynthetic process	2.11E-04
14	GO:0032776: DNA methylation on cytosine	2.11E-04
15	GO:0032456: endocytic recycling	3.09E-04
16	GO:0051016: barbed-end actin filament capping	3.09E-04
17	GO:0010411: xyloglucan metabolic process	5.46E-04
18	GO:1900425: negative regulation of defense response to bacterium	6.44E-04
19	GO:0006555: methionine metabolic process	6.44E-04
20	GO:0016051: carbohydrate biosynthetic process	7.56E-04
21	GO:0009554: megasporogenesis	7.68E-04
22	GO:0050829: defense response to Gram-negative bacterium	8.97E-04
23	GO:0051510: regulation of unidimensional cell growth	8.97E-04
24	GO:0045010: actin nucleation	1.03E-03
25	GO:0052543: callose deposition in cell wall	1.03E-03
26	GO:0048193: Golgi vesicle transport	1.17E-03
27	GO:0006349: regulation of gene expression by genetic imprinting	1.47E-03
28	GO:0009638: phototropism	1.47E-03
29	GO:0006779: porphyrin-containing compound biosynthetic process	1.47E-03
30	GO:0043069: negative regulation of programmed cell death	1.63E-03
31	GO:0006325: chromatin organization	1.63E-03
32	GO:0016569: covalent chromatin modification	1.69E-03
33	GO:0000038: very long-chain fatty acid metabolic process	1.79E-03
34	GO:0016024: CDP-diacylglycerol biosynthetic process	1.96E-03
35	GO:0030036: actin cytoskeleton organization	2.14E-03
36	GO:0010143: cutin biosynthetic process	2.32E-03
37	GO:0009969: xyloglucan biosynthetic process	2.50E-03
38	GO:0009225: nucleotide-sugar metabolic process	2.50E-03
39	GO:0006730: one-carbon metabolic process	3.50E-03
40	GO:0010017: red or far-red light signaling pathway	3.50E-03
41	GO:0009294: DNA mediated transformation	3.71E-03
42	GO:0040007: growth	3.71E-03
43	GO:0019722: calcium-mediated signaling	3.93E-03
44	GO:0009958: positive gravitropism	4.60E-03
45	GO:0009741: response to brassinosteroid	4.60E-03
46	GO:0009791: post-embryonic development	5.07E-03
47	GO:0080167: response to karrikin	5.85E-03
48	GO:0007267: cell-cell signaling	6.33E-03
49	GO:0016311: dephosphorylation	7.96E-03
50	GO:0048767: root hair elongation	8.53E-03
51	GO:0010218: response to far red light	8.82E-03
52	GO:0009910: negative regulation of flower development	9.12E-03
53	GO:0009637: response to blue light	9.73E-03
54	GO:0010114: response to red light	1.16E-02
55	GO:0008643: carbohydrate transport	1.23E-02
56	GO:0031347: regulation of defense response	1.33E-02
57	GO:0009809: lignin biosynthetic process	1.44E-02
58	GO:0006486: protein glycosylation	1.44E-02
59	GO:0009585: red, far-red light phototransduction	1.44E-02
60	GO:0009742: brassinosteroid mediated signaling pathway	1.92E-02
61	GO:0006633: fatty acid biosynthetic process	2.54E-02
62	GO:0006468: protein phosphorylation	2.55E-02
63	GO:0040008: regulation of growth	2.63E-02
64	GO:0007166: cell surface receptor signaling pathway	2.99E-02
65	GO:0009826: unidimensional cell growth	3.61E-02
66	GO:0009860: pollen tube growth	3.91E-02
67	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.43E-02
68	GO:0046777: protein autophosphorylation	4.54E-02
69	GO:0045454: cell redox homeostasis	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0004851: uroporphyrin-III C-methyltransferase activity	0.00E+00
2	GO:0080132: fatty acid alpha-hydroxylase activity	5.03E-05
3	GO:0048531: beta-1,3-galactosyltransferase activity	1.23E-04
4	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.70E-04
5	GO:0016758: transferase activity, transferring hexosyl groups	2.10E-04
6	GO:0010429: methyl-CpNpN binding	2.11E-04
7	GO:0004478: methionine adenosyltransferase activity	2.11E-04
8	GO:0010428: methyl-CpNpG binding	2.11E-04
9	GO:0001872: (1->3)-beta-D-glucan binding	3.09E-04
10	GO:0033843: xyloglucan 6-xylosyltransferase activity	3.09E-04
11	GO:0050378: UDP-glucuronate 4-epimerase activity	4.15E-04
12	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.15E-04
13	GO:0010385: double-stranded methylated DNA binding	4.15E-04
14	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	6.44E-04
15	GO:0035252: UDP-xylosyltransferase activity	6.44E-04
16	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	6.44E-04
17	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	7.68E-04
18	GO:0019900: kinase binding	7.68E-04
19	GO:0008327: methyl-CpG binding	1.79E-03
20	GO:0008134: transcription factor binding	2.88E-03
21	GO:0008168: methyltransferase activity	4.55E-03
22	GO:0003682: chromatin binding	4.99E-03
23	GO:0016762: xyloglucan:xyloglucosyl transferase activity	5.32E-03
24	GO:0051015: actin filament binding	5.81E-03
25	GO:0016791: phosphatase activity	6.07E-03
26	GO:0016759: cellulose synthase activity	6.07E-03
27	GO:0016757: transferase activity, transferring glycosyl groups	7.43E-03
28	GO:0030247: polysaccharide binding	7.68E-03
29	GO:0016798: hydrolase activity, acting on glycosyl bonds	7.68E-03
30	GO:0004672: protein kinase activity	1.01E-02
31	GO:0042393: histone binding	1.07E-02
32	GO:0016298: lipase activity	1.47E-02
33	GO:0003779: actin binding	1.80E-02
34	GO:0015035: protein disulfide oxidoreductase activity	1.88E-02
35	GO:0016746: transferase activity, transferring acyl groups	1.88E-02
36	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.03E-02
37	GO:0005507: copper ion binding	2.19E-02
38	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.59E-02
39	GO:0003824: catalytic activity	3.42E-02
40	GO:0004842: ubiquitin-protein transferase activity	4.30E-02
41	GO:0061630: ubiquitin protein ligase activity	4.48E-02
42	GO:0004674: protein serine/threonine kinase activity	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0031225: anchored component of membrane	3.68E-08
2	GO:0000139: Golgi membrane	4.79E-06
3	GO:0005794: Golgi apparatus	1.68E-05
4	GO:0009506: plasmodesma	2.85E-05
5	GO:0009505: plant-type cell wall	4.15E-05
6	GO:0005886: plasma membrane	5.73E-05
7	GO:0035619: root hair tip	3.09E-04
8	GO:0046658: anchored component of plasma membrane	4.81E-04
9	GO:0032588: trans-Golgi network membrane	6.44E-04
10	GO:0010369: chromocenter	7.68E-04
11	GO:0005802: trans-Golgi network	8.23E-04
12	GO:0005768: endosome	9.96E-04
13	GO:0031901: early endosome membrane	1.32E-03
14	GO:0005720: nuclear heterochromatin	1.32E-03
15	GO:0016021: integral component of membrane	2.01E-03
16	GO:0005618: cell wall	2.35E-03
17	GO:0032580: Golgi cisterna membrane	6.07E-03
18	GO:0005576: extracellular region	6.91E-03
19	GO:0048046: apoplast	8.22E-03
20	GO:0005615: extracellular space	2.95E-02