Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G20650

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
2GO:2001294: malonyl-CoA catabolic process0.00E+00
3GO:0009773: photosynthetic electron transport in photosystem I2.26E-06
4GO:0030091: protein repair5.09E-05
5GO:0080051: cutin transport9.33E-05
6GO:0065002: intracellular protein transmembrane transport9.33E-05
7GO:0000305: response to oxygen radical9.33E-05
8GO:0043953: protein transport by the Tat complex9.33E-05
9GO:0080005: photosystem stoichiometry adjustment2.20E-04
10GO:0042939: tripeptide transport2.20E-04
11GO:0016122: xanthophyll metabolic process2.20E-04
12GO:0009915: phloem sucrose loading2.20E-04
13GO:0015908: fatty acid transport2.20E-04
14GO:0055114: oxidation-reduction process2.89E-04
15GO:0016050: vesicle organization3.67E-04
16GO:0006753: nucleoside phosphate metabolic process3.67E-04
17GO:0071484: cellular response to light intensity5.28E-04
18GO:0010107: potassium ion import7.02E-04
19GO:0042938: dipeptide transport7.02E-04
20GO:0010021: amylopectin biosynthetic process7.02E-04
21GO:0010222: stem vascular tissue pattern formation7.02E-04
22GO:0015994: chlorophyll metabolic process7.02E-04
23GO:1902584: positive regulation of response to water deprivation7.02E-04
24GO:0006749: glutathione metabolic process7.02E-04
25GO:0016032: viral process7.57E-04
26GO:0098719: sodium ion import across plasma membrane8.88E-04
27GO:0010117: photoprotection8.88E-04
28GO:0006465: signal peptide processing8.88E-04
29GO:0010027: thylakoid membrane organization1.01E-03
30GO:0016126: sterol biosynthetic process1.01E-03
31GO:0010190: cytochrome b6f complex assembly1.08E-03
32GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.08E-03
33GO:0010016: shoot system morphogenesis1.29E-03
34GO:0010189: vitamin E biosynthetic process1.29E-03
35GO:0015937: coenzyme A biosynthetic process1.51E-03
36GO:0055075: potassium ion homeostasis1.75E-03
37GO:0005978: glycogen biosynthetic process1.75E-03
38GO:0090333: regulation of stomatal closure2.25E-03
39GO:0000373: Group II intron splicing2.25E-03
40GO:0098656: anion transmembrane transport2.25E-03
41GO:0009644: response to high light intensity2.27E-03
42GO:0051453: regulation of intracellular pH2.52E-03
43GO:0005982: starch metabolic process2.52E-03
44GO:0009638: phototropism2.52E-03
45GO:0006857: oligopeptide transport3.01E-03
46GO:0016485: protein processing3.09E-03
47GO:0010628: positive regulation of gene expression3.69E-03
48GO:0006094: gluconeogenesis3.69E-03
49GO:0009767: photosynthetic electron transport chain3.69E-03
50GO:0010588: cotyledon vascular tissue pattern formation3.69E-03
51GO:0009785: blue light signaling pathway3.69E-03
52GO:0006807: nitrogen compound metabolic process3.69E-03
53GO:0009266: response to temperature stimulus4.01E-03
54GO:0009934: regulation of meristem structural organization4.01E-03
55GO:0010025: wax biosynthetic process4.67E-03
56GO:0010187: negative regulation of seed germination5.01E-03
57GO:0008299: isoprenoid biosynthetic process5.36E-03
58GO:0009686: gibberellin biosynthetic process6.47E-03
59GO:0042335: cuticle development7.65E-03
60GO:0007166: cell surface receptor signaling pathway7.86E-03
61GO:0006885: regulation of pH8.06E-03
62GO:0006662: glycerol ether metabolic process8.06E-03
63GO:0010268: brassinosteroid homeostasis8.06E-03
64GO:0048544: recognition of pollen8.47E-03
65GO:0007018: microtubule-based movement8.47E-03
66GO:0006814: sodium ion transport8.47E-03
67GO:0019252: starch biosynthetic process8.90E-03
68GO:0016132: brassinosteroid biosynthetic process9.33E-03
69GO:0009567: double fertilization forming a zygote and endosperm1.07E-02
70GO:0016125: sterol metabolic process1.07E-02
71GO:0071805: potassium ion transmembrane transport1.11E-02
72GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.37E-02
73GO:0000160: phosphorelay signal transduction system1.51E-02
74GO:0015979: photosynthesis1.51E-02
75GO:0045454: cell redox homeostasis1.59E-02
76GO:0007568: aging1.62E-02
77GO:0006979: response to oxidative stress1.76E-02
78GO:0034599: cellular response to oxidative stress1.78E-02
79GO:0006631: fatty acid metabolic process1.95E-02
80GO:0009926: auxin polar transport2.07E-02
81GO:0016567: protein ubiquitination2.17E-02
82GO:0006855: drug transmembrane transport2.31E-02
83GO:0031347: regulation of defense response2.37E-02
84GO:0009736: cytokinin-activated signaling pathway2.55E-02
85GO:0006813: potassium ion transport2.55E-02
86GO:0006096: glycolytic process2.88E-02
87GO:0005975: carbohydrate metabolic process2.95E-02
88GO:0009416: response to light stimulus3.47E-02
89GO:0009611: response to wounding3.55E-02
90GO:0006511: ubiquitin-dependent protein catabolic process4.69E-02
91GO:0007623: circadian rhythm4.84E-02
RankGO TermAdjusted P value
1GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
2GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
3GO:0009976: tocopherol cyclase activity0.00E+00
4GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
5GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
6GO:0004506: squalene monooxygenase activity7.97E-06
7GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.87E-05
8GO:0010945: CoA pyrophosphatase activity9.33E-05
9GO:0051777: ent-kaurenoate oxidase activity9.33E-05
10GO:0015245: fatty acid transporter activity9.33E-05
11GO:0035671: enone reductase activity9.33E-05
12GO:0050139: nicotinate-N-glucosyltransferase activity9.33E-05
13GO:0003844: 1,4-alpha-glucan branching enzyme activity2.20E-04
14GO:0042937: tripeptide transporter activity2.20E-04
15GO:0004362: glutathione-disulfide reductase activity2.20E-04
16GO:0009977: proton motive force dependent protein transmembrane transporter activity2.20E-04
17GO:0070402: NADPH binding3.67E-04
18GO:0043169: cation binding3.67E-04
19GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity5.28E-04
20GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity5.28E-04
21GO:0016853: isomerase activity6.22E-04
22GO:0042936: dipeptide transporter activity7.02E-04
23GO:0080032: methyl jasmonate esterase activity7.02E-04
24GO:0000210: NAD+ diphosphatase activity1.08E-03
25GO:0015081: sodium ion transmembrane transporter activity1.08E-03
26GO:0004332: fructose-bisphosphate aldolase activity1.08E-03
27GO:0035673: oligopeptide transmembrane transporter activity1.08E-03
28GO:0042578: phosphoric ester hydrolase activity1.08E-03
29GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.25E-03
30GO:0050660: flavin adenine dinucleotide binding1.93E-03
31GO:0008233: peptidase activity2.06E-03
32GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors2.25E-03
33GO:0015386: potassium:proton antiporter activity3.09E-03
34GO:0015198: oligopeptide transporter activity3.38E-03
35GO:0016787: hydrolase activity3.42E-03
36GO:0005315: inorganic phosphate transmembrane transporter activity3.69E-03
37GO:0004565: beta-galactosidase activity3.69E-03
38GO:0015079: potassium ion transmembrane transporter activity5.36E-03
39GO:0004176: ATP-dependent peptidase activity5.72E-03
40GO:0016491: oxidoreductase activity6.14E-03
41GO:0004675: transmembrane receptor protein serine/threonine kinase activity6.41E-03
42GO:0047134: protein-disulfide reductase activity7.25E-03
43GO:0004791: thioredoxin-disulfide reductase activity8.47E-03
44GO:0048038: quinone binding9.33E-03
45GO:0000156: phosphorelay response regulator activity1.02E-02
46GO:0015385: sodium:proton antiporter activity1.02E-02
47GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.02E-02
48GO:0008483: transaminase activity1.11E-02
49GO:0019825: oxygen binding1.12E-02
50GO:0015238: drug transmembrane transporter activity1.51E-02
51GO:0004222: metalloendopeptidase activity1.56E-02
52GO:0030145: manganese ion binding1.62E-02
53GO:0005524: ATP binding1.66E-02
54GO:0005506: iron ion binding1.71E-02
55GO:0050661: NADP binding1.89E-02
56GO:0003777: microtubule motor activity2.75E-02
57GO:0031625: ubiquitin protein ligase binding2.75E-02
58GO:0004672: protein kinase activity2.83E-02
59GO:0080043: quercetin 3-O-glucosyltransferase activity3.08E-02
60GO:0080044: quercetin 7-O-glucosyltransferase activity3.08E-02
61GO:0020037: heme binding3.09E-02
62GO:0022857: transmembrane transporter activity3.15E-02
63GO:0015035: protein disulfide oxidoreductase activity3.35E-02
64GO:0005515: protein binding3.75E-02
65GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.93E-02
66GO:0030246: carbohydrate binding4.65E-02
67GO:0015297: antiporter activity4.69E-02
68GO:0008017: microtubule binding5.00E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0009507: chloroplast1.41E-14
3GO:0009534: chloroplast thylakoid2.17E-08
4GO:0009535: chloroplast thylakoid membrane5.34E-08
5GO:0009570: chloroplast stroma1.71E-07
6GO:0016021: integral component of membrane1.91E-05
7GO:0009941: chloroplast envelope8.04E-05
8GO:0005787: signal peptidase complex9.33E-05
9GO:0031361: integral component of thylakoid membrane9.33E-05
10GO:0009897: external side of plasma membrane3.67E-04
11GO:0033281: TAT protein transport complex3.67E-04
12GO:0010287: plastoglobule5.87E-04
13GO:0009501: amyloplast1.75E-03
14GO:0031977: thylakoid lumen1.94E-03
15GO:0031969: chloroplast membrane2.11E-03
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.25E-03
17GO:0009508: plastid chromosome3.69E-03
18GO:0009706: chloroplast inner membrane3.99E-03
19GO:0009654: photosystem II oxygen evolving complex5.36E-03
20GO:0005871: kinesin complex7.25E-03
21GO:0019898: extrinsic component of membrane8.90E-03
22GO:0009579: thylakoid8.94E-03
23GO:0005778: peroxisomal membrane1.11E-02
24GO:0010319: stromule1.11E-02
25GO:0009295: nucleoid1.11E-02
26GO:0000151: ubiquitin ligase complex1.46E-02
27GO:0019005: SCF ubiquitin ligase complex1.46E-02
28GO:0005886: plasma membrane2.97E-02
29GO:0009543: chloroplast thylakoid lumen3.85E-02
30GO:0005759: mitochondrial matrix4.53E-02
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Gene type



Gene DE type





AT2G42620