Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G20340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
8GO:1905499: trichome papilla formation0.00E+00
9GO:0006412: translation2.00E-17
10GO:0032544: plastid translation3.14E-12
11GO:0042254: ribosome biogenesis9.36E-11
12GO:0006633: fatty acid biosynthetic process6.04E-08
13GO:0015979: photosynthesis1.43E-07
14GO:0010207: photosystem II assembly1.17E-06
15GO:0009735: response to cytokinin3.22E-06
16GO:0051085: chaperone mediated protein folding requiring cofactor2.55E-05
17GO:0042742: defense response to bacterium6.16E-05
18GO:0010236: plastoquinone biosynthetic process7.32E-05
19GO:1901259: chloroplast rRNA processing1.47E-04
20GO:0045454: cell redox homeostasis1.64E-04
21GO:0009772: photosynthetic electron transport in photosystem II1.93E-04
22GO:0000413: protein peptidyl-prolyl isomerization2.00E-04
23GO:0048564: photosystem I assembly2.45E-04
24GO:0046167: glycerol-3-phosphate biosynthetic process2.60E-04
25GO:1902458: positive regulation of stomatal opening2.60E-04
26GO:0071588: hydrogen peroxide mediated signaling pathway2.60E-04
27GO:0060627: regulation of vesicle-mediated transport2.60E-04
28GO:1904966: positive regulation of vitamin E biosynthetic process2.60E-04
29GO:0010442: guard cell morphogenesis2.60E-04
30GO:1904964: positive regulation of phytol biosynthetic process2.60E-04
31GO:0042371: vitamin K biosynthetic process2.60E-04
32GO:0009658: chloroplast organization4.13E-04
33GO:0010027: thylakoid membrane organization4.82E-04
34GO:0006949: syncytium formation5.06E-04
35GO:0080183: response to photooxidative stress5.74E-04
36GO:0006729: tetrahydrobiopterin biosynthetic process5.74E-04
37GO:1903426: regulation of reactive oxygen species biosynthetic process5.74E-04
38GO:0043039: tRNA aminoacylation5.74E-04
39GO:0052541: plant-type cell wall cellulose metabolic process5.74E-04
40GO:1902326: positive regulation of chlorophyll biosynthetic process5.74E-04
41GO:0006650: glycerophospholipid metabolic process5.74E-04
42GO:0009773: photosynthetic electron transport in photosystem I5.84E-04
43GO:0043085: positive regulation of catalytic activity5.84E-04
44GO:0018119: peptidyl-cysteine S-nitrosylation5.84E-04
45GO:0015995: chlorophyll biosynthetic process5.93E-04
46GO:0009409: response to cold6.01E-04
47GO:0045037: protein import into chloroplast stroma6.67E-04
48GO:2001295: malonyl-CoA biosynthetic process9.31E-04
49GO:0090506: axillary shoot meristem initiation9.31E-04
50GO:0046168: glycerol-3-phosphate catabolic process9.31E-04
51GO:0090391: granum assembly9.31E-04
52GO:0010581: regulation of starch biosynthetic process9.31E-04
53GO:0071492: cellular response to UV-A9.31E-04
54GO:0045793: positive regulation of cell size9.31E-04
55GO:0010025: wax biosynthetic process1.05E-03
56GO:0006418: tRNA aminoacylation for protein translation1.28E-03
57GO:0071484: cellular response to light intensity1.33E-03
58GO:0051639: actin filament network formation1.33E-03
59GO:0006241: CTP biosynthetic process1.33E-03
60GO:0043481: anthocyanin accumulation in tissues in response to UV light1.33E-03
61GO:0006072: glycerol-3-phosphate metabolic process1.33E-03
62GO:0006424: glutamyl-tRNA aminoacylation1.33E-03
63GO:0006165: nucleoside diphosphate phosphorylation1.33E-03
64GO:0006228: UTP biosynthetic process1.33E-03
65GO:0010088: phloem development1.33E-03
66GO:0006986: response to unfolded protein1.33E-03
67GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.33E-03
68GO:0006457: protein folding1.41E-03
69GO:0015976: carbon utilization1.78E-03
70GO:0071486: cellular response to high light intensity1.78E-03
71GO:0051764: actin crosslink formation1.78E-03
72GO:0006085: acetyl-CoA biosynthetic process1.78E-03
73GO:0006183: GTP biosynthetic process1.78E-03
74GO:2000122: negative regulation of stomatal complex development1.78E-03
75GO:0006546: glycine catabolic process1.78E-03
76GO:0000919: cell plate assembly1.78E-03
77GO:0044206: UMP salvage1.78E-03
78GO:0010037: response to carbon dioxide1.78E-03
79GO:0009956: radial pattern formation1.78E-03
80GO:0042335: cuticle development2.13E-03
81GO:0031365: N-terminal protein amino acid modification2.27E-03
82GO:0006665: sphingolipid metabolic process2.27E-03
83GO:0032543: mitochondrial translation2.27E-03
84GO:0048359: mucilage metabolic process involved in seed coat development2.27E-03
85GO:0045038: protein import into chloroplast thylakoid membrane2.27E-03
86GO:0043097: pyrimidine nucleoside salvage2.27E-03
87GO:0055114: oxidation-reduction process2.32E-03
88GO:0042549: photosystem II stabilization2.80E-03
89GO:0006796: phosphate-containing compound metabolic process2.80E-03
90GO:0010190: cytochrome b6f complex assembly2.80E-03
91GO:0006206: pyrimidine nucleobase metabolic process2.80E-03
92GO:0032973: amino acid export2.80E-03
93GO:0010583: response to cyclopentenone3.02E-03
94GO:0010019: chloroplast-nucleus signaling pathway3.36E-03
95GO:0010555: response to mannitol3.36E-03
96GO:0009955: adaxial/abaxial pattern specification3.36E-03
97GO:0042372: phylloquinone biosynthetic process3.36E-03
98GO:0010067: procambium histogenesis3.36E-03
99GO:0042026: protein refolding3.36E-03
100GO:0006694: steroid biosynthetic process3.36E-03
101GO:0010189: vitamin E biosynthetic process3.36E-03
102GO:0009854: oxidative photosynthetic carbon pathway3.36E-03
103GO:0009828: plant-type cell wall loosening3.42E-03
104GO:0045995: regulation of embryonic development3.97E-03
105GO:0043090: amino acid import3.97E-03
106GO:0010196: nonphotochemical quenching3.97E-03
107GO:0071669: plant-type cell wall organization or biogenesis3.97E-03
108GO:0006400: tRNA modification3.97E-03
109GO:0009642: response to light intensity4.60E-03
110GO:2000070: regulation of response to water deprivation4.60E-03
111GO:0006875: cellular metal ion homeostasis4.60E-03
112GO:0045010: actin nucleation4.60E-03
113GO:0009808: lignin metabolic process5.27E-03
114GO:0015996: chlorophyll catabolic process5.27E-03
115GO:0019430: removal of superoxide radicals5.27E-03
116GO:0007186: G-protein coupled receptor signaling pathway5.27E-03
117GO:0006526: arginine biosynthetic process5.27E-03
118GO:0009817: defense response to fungus, incompatible interaction5.32E-03
119GO:0015780: nucleotide-sugar transport5.98E-03
120GO:0010206: photosystem II repair5.98E-03
121GO:0080144: amino acid homeostasis5.98E-03
122GO:0007568: aging6.15E-03
123GO:0042761: very long-chain fatty acid biosynthetic process6.71E-03
124GO:0010380: regulation of chlorophyll biosynthetic process6.71E-03
125GO:0031425: chloroplast RNA processing6.71E-03
126GO:0034599: cellular response to oxidative stress7.05E-03
127GO:0019538: protein metabolic process7.47E-03
128GO:0010015: root morphogenesis8.27E-03
129GO:0042546: cell wall biogenesis9.06E-03
130GO:0009826: unidimensional cell growth9.44E-03
131GO:0030036: actin cytoskeleton organization9.94E-03
132GO:0006006: glucose metabolic process9.94E-03
133GO:0010020: chloroplast fission1.08E-02
134GO:0009933: meristem structural organization1.08E-02
135GO:0019253: reductive pentose-phosphate cycle1.08E-02
136GO:0010223: secondary shoot formation1.08E-02
137GO:0009664: plant-type cell wall organization1.09E-02
138GO:0042538: hyperosmotic salinity response1.09E-02
139GO:0006071: glycerol metabolic process1.27E-02
140GO:0006636: unsaturated fatty acid biosynthetic process1.27E-02
141GO:0019344: cysteine biosynthetic process1.36E-02
142GO:0009116: nucleoside metabolic process1.36E-02
143GO:0000027: ribosomal large subunit assembly1.36E-02
144GO:0051017: actin filament bundle assembly1.36E-02
145GO:0006096: glycolytic process1.39E-02
146GO:0019953: sexual reproduction1.46E-02
147GO:0010026: trichome differentiation1.46E-02
148GO:0061077: chaperone-mediated protein folding1.56E-02
149GO:0007005: mitochondrion organization1.67E-02
150GO:0009793: embryo development ending in seed dormancy1.75E-02
151GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.77E-02
152GO:0009411: response to UV1.77E-02
153GO:0001944: vasculature development1.77E-02
154GO:0010089: xylem development1.88E-02
155GO:0010091: trichome branching1.88E-02
156GO:0016117: carotenoid biosynthetic process1.99E-02
157GO:0000271: polysaccharide biosynthetic process2.11E-02
158GO:0010087: phloem or xylem histogenesis2.11E-02
159GO:0006629: lipid metabolic process2.13E-02
160GO:0006520: cellular amino acid metabolic process2.22E-02
161GO:0006662: glycerol ether metabolic process2.22E-02
162GO:0010305: leaf vascular tissue pattern formation2.22E-02
163GO:0010182: sugar mediated signaling pathway2.22E-02
164GO:0015986: ATP synthesis coupled proton transport2.34E-02
165GO:0007018: microtubule-based movement2.34E-02
166GO:0042744: hydrogen peroxide catabolic process2.40E-02
167GO:0046686: response to cadmium ion2.41E-02
168GO:0009790: embryo development2.46E-02
169GO:0019252: starch biosynthetic process2.46E-02
170GO:0008654: phospholipid biosynthetic process2.46E-02
171GO:0016132: brassinosteroid biosynthetic process2.58E-02
172GO:0071554: cell wall organization or biogenesis2.58E-02
173GO:0000302: response to reactive oxygen species2.58E-02
174GO:0032502: developmental process2.70E-02
175GO:0006413: translational initiation2.71E-02
176GO:0010090: trichome morphogenesis2.83E-02
177GO:0010286: heat acclimation3.09E-02
178GO:0009911: positive regulation of flower development3.35E-02
179GO:0071555: cell wall organization3.52E-02
180GO:0009627: systemic acquired resistance3.63E-02
181GO:0010411: xyloglucan metabolic process3.77E-02
182GO:0048481: plant ovule development4.05E-02
183GO:0030244: cellulose biosynthetic process4.05E-02
184GO:0018298: protein-chromophore linkage4.05E-02
185GO:0008219: cell death4.05E-02
186GO:0009832: plant-type cell wall biogenesis4.20E-02
187GO:0009834: plant-type secondary cell wall biogenesis4.34E-02
188GO:0009407: toxin catabolic process4.34E-02
189GO:0010119: regulation of stomatal movement4.49E-02
190GO:0009631: cold acclimation4.49E-02
191GO:0009853: photorespiration4.79E-02
RankGO TermAdjusted P value
1GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
2GO:0050614: delta24-sterol reductase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
5GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
6GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
11GO:0004822: isoleucine-tRNA ligase activity0.00E+00
12GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
13GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
14GO:0019843: rRNA binding1.15E-20
15GO:0003735: structural constituent of ribosome2.76E-20
16GO:0051920: peroxiredoxin activity1.46E-08
17GO:0016209: antioxidant activity5.22E-08
18GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity3.13E-06
19GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.13E-05
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.76E-05
21GO:0004659: prenyltransferase activity4.61E-05
22GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.60E-04
23GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity2.60E-04
24GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.60E-04
25GO:0004560: alpha-L-fucosidase activity2.60E-04
26GO:0004831: tyrosine-tRNA ligase activity2.60E-04
27GO:0015088: copper uptake transmembrane transporter activity2.60E-04
28GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.60E-04
29GO:0004601: peroxidase activity4.13E-04
30GO:0008047: enzyme activator activity5.06E-04
31GO:0042389: omega-3 fatty acid desaturase activity5.74E-04
32GO:0004047: aminomethyltransferase activity5.74E-04
33GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.74E-04
34GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity9.31E-04
35GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity9.31E-04
36GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity9.31E-04
37GO:0002161: aminoacyl-tRNA editing activity9.31E-04
38GO:0004148: dihydrolipoyl dehydrogenase activity9.31E-04
39GO:0004075: biotin carboxylase activity9.31E-04
40GO:0008097: 5S rRNA binding1.33E-03
41GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.33E-03
42GO:0003878: ATP citrate synthase activity1.33E-03
43GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.33E-03
44GO:0004550: nucleoside diphosphate kinase activity1.33E-03
45GO:0016851: magnesium chelatase activity1.33E-03
46GO:0051287: NAD binding1.58E-03
47GO:0022891: substrate-specific transmembrane transporter activity1.68E-03
48GO:0004845: uracil phosphoribosyltransferase activity1.78E-03
49GO:0016836: hydro-lyase activity1.78E-03
50GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.78E-03
51GO:0046527: glucosyltransferase activity1.78E-03
52GO:0043495: protein anchor1.78E-03
53GO:0004812: aminoacyl-tRNA ligase activity1.97E-03
54GO:0003989: acetyl-CoA carboxylase activity2.27E-03
55GO:0009922: fatty acid elongase activity2.27E-03
56GO:0004040: amidase activity2.27E-03
57GO:0004791: thioredoxin-disulfide reductase activity2.47E-03
58GO:0004130: cytochrome-c peroxidase activity2.80E-03
59GO:0016462: pyrophosphatase activity2.80E-03
60GO:0016688: L-ascorbate peroxidase activity2.80E-03
61GO:0051082: unfolded protein binding2.83E-03
62GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.22E-03
63GO:0051753: mannan synthase activity3.36E-03
64GO:0004849: uridine kinase activity3.36E-03
65GO:0102391: decanoate--CoA ligase activity3.36E-03
66GO:0008235: metalloexopeptidase activity3.97E-03
67GO:0004427: inorganic diphosphatase activity3.97E-03
68GO:0019899: enzyme binding3.97E-03
69GO:0004467: long-chain fatty acid-CoA ligase activity3.97E-03
70GO:0016168: chlorophyll binding4.32E-03
71GO:0004033: aldo-keto reductase (NADP) activity4.60E-03
72GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.27E-03
73GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors5.98E-03
74GO:0008889: glycerophosphodiester phosphodiesterase activity5.98E-03
75GO:0005381: iron ion transmembrane transporter activity6.71E-03
76GO:0047617: acyl-CoA hydrolase activity6.71E-03
77GO:0003746: translation elongation factor activity6.74E-03
78GO:0044183: protein binding involved in protein folding8.27E-03
79GO:0004177: aminopeptidase activity8.27E-03
80GO:0000049: tRNA binding9.09E-03
81GO:0004089: carbonate dehydratase activity9.94E-03
82GO:0031072: heat shock protein binding9.94E-03
83GO:0016788: hydrolase activity, acting on ester bonds1.02E-02
84GO:0008266: poly(U) RNA binding1.08E-02
85GO:0005528: FK506 binding1.36E-02
86GO:0051087: chaperone binding1.46E-02
87GO:0043424: protein histidine kinase binding1.46E-02
88GO:0052689: carboxylic ester hydrolase activity1.48E-02
89GO:0004176: ATP-dependent peptidase activity1.56E-02
90GO:0033612: receptor serine/threonine kinase binding1.56E-02
91GO:0042803: protein homodimerization activity1.74E-02
92GO:0016760: cellulose synthase (UDP-forming) activity1.77E-02
93GO:0016491: oxidoreductase activity1.81E-02
94GO:0008514: organic anion transmembrane transporter activity1.88E-02
95GO:0005102: receptor binding1.99E-02
96GO:0047134: protein-disulfide reductase activity1.99E-02
97GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.22E-02
98GO:0003729: mRNA binding2.23E-02
99GO:0016762: xyloglucan:xyloglucosyl transferase activity2.58E-02
100GO:0051015: actin filament binding2.83E-02
101GO:0008483: transaminase activity3.09E-02
102GO:0016722: oxidoreductase activity, oxidizing metal ions3.09E-02
103GO:0008237: metallopeptidase activity3.09E-02
104GO:0005509: calcium ion binding3.13E-02
105GO:0016413: O-acetyltransferase activity3.22E-02
106GO:0003743: translation initiation factor activity3.39E-02
107GO:0003723: RNA binding3.55E-02
108GO:0042802: identical protein binding3.69E-02
109GO:0016798: hydrolase activity, acting on glycosyl bonds3.77E-02
110GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.91E-02
111GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.49E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009507: chloroplast7.92E-70
5GO:0009570: chloroplast stroma2.48E-64
6GO:0009941: chloroplast envelope1.32E-53
7GO:0009579: thylakoid1.48E-37
8GO:0009535: chloroplast thylakoid membrane1.21E-29
9GO:0005840: ribosome9.21E-20
10GO:0009534: chloroplast thylakoid2.27E-18
11GO:0031977: thylakoid lumen4.71E-15
12GO:0009543: chloroplast thylakoid lumen3.69E-14
13GO:0010319: stromule3.33E-08
14GO:0009654: photosystem II oxygen evolving complex6.12E-08
15GO:0000311: plastid large ribosomal subunit6.43E-07
16GO:0030095: chloroplast photosystem II1.17E-06
17GO:0019898: extrinsic component of membrane1.59E-05
18GO:0048046: apoplast2.01E-05
19GO:0009536: plastid2.39E-05
20GO:0022626: cytosolic ribosome3.04E-05
21GO:0016020: membrane6.45E-05
22GO:0015934: large ribosomal subunit8.52E-05
23GO:0009532: plastid stroma1.09E-04
24GO:0009547: plastid ribosome2.60E-04
25GO:0009515: granal stacked thylakoid2.60E-04
26GO:0009923: fatty acid elongase complex2.60E-04
27GO:0009505: plant-type cell wall4.97E-04
28GO:0042170: plastid membrane5.74E-04
29GO:0009528: plastid inner membrane9.31E-04
30GO:0010007: magnesium chelatase complex9.31E-04
31GO:0042651: thylakoid membrane1.28E-03
32GO:0032432: actin filament bundle1.33E-03
33GO:0009331: glycerol-3-phosphate dehydrogenase complex1.33E-03
34GO:0009346: citrate lyase complex1.33E-03
35GO:0015935: small ribosomal subunit1.41E-03
36GO:0009527: plastid outer membrane1.78E-03
37GO:0031897: Tic complex1.78E-03
38GO:0009523: photosystem II2.64E-03
39GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.80E-03
40GO:0031209: SCAR complex2.80E-03
41GO:0009706: chloroplast inner membrane2.83E-03
42GO:0010287: plastoglobule3.52E-03
43GO:0009533: chloroplast stromal thylakoid3.97E-03
44GO:0009539: photosystem II reaction center5.27E-03
45GO:0005763: mitochondrial small ribosomal subunit5.98E-03
46GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.98E-03
47GO:0005618: cell wall7.70E-03
48GO:0046658: anchored component of plasma membrane8.12E-03
49GO:0005884: actin filament8.27E-03
50GO:0000312: plastid small ribosomal subunit1.08E-02
51GO:0005874: microtubule1.25E-02
52GO:0022625: cytosolic large ribosomal subunit1.39E-02
53GO:0005871: kinesin complex1.99E-02
54GO:0005759: mitochondrial matrix2.64E-02
55GO:0030529: intracellular ribonucleoprotein complex3.35E-02
56GO:0009707: chloroplast outer membrane4.05E-02
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Gene type



Gene DE type