co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G18480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
2	GO:0002191: cap-dependent translational initiation	0.00E+00
3	GO:0039694: viral RNA genome replication	0.00E+00
4	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
5	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
6	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
7	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
8	GO:0007141: male meiosis I	0.00E+00
9	GO:0006983: ER overload response	0.00E+00
10	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
11	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
12	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
13	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
14	GO:0000188: inactivation of MAPK activity	0.00E+00
15	GO:0007160: cell-matrix adhesion	0.00E+00
16	GO:0010636: positive regulation of mitochondrial fusion	0.00E+00
17	GO:0080056: petal vascular tissue pattern formation	0.00E+00
18	GO:0048312: intracellular distribution of mitochondria	0.00E+00
19	GO:0000266: mitochondrial fission	3.13E-05
20	GO:0006014: D-ribose metabolic process	1.05E-04
21	GO:0009612: response to mechanical stimulus	1.45E-04
22	GO:0006468: protein phosphorylation	1.48E-04
23	GO:0016559: peroxisome fission	2.41E-04
24	GO:0006481: C-terminal protein methylation	2.57E-04
25	GO:0010265: SCF complex assembly	2.57E-04
26	GO:0031338: regulation of vesicle fusion	2.57E-04
27	GO:0009968: negative regulation of signal transduction	2.57E-04
28	GO:0080120: CAAX-box protein maturation	2.57E-04
29	GO:0071586: CAAX-box protein processing	2.57E-04
30	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.57E-04
31	GO:0043547: positive regulation of GTPase activity	2.57E-04
32	GO:0019567: arabinose biosynthetic process	2.57E-04
33	GO:0006422: aspartyl-tRNA aminoacylation	2.57E-04
34	GO:0043069: negative regulation of programmed cell death	4.99E-04
35	GO:0009727: detection of ethylene stimulus	5.68E-04
36	GO:0006212: uracil catabolic process	5.68E-04
37	GO:0007584: response to nutrient	5.68E-04
38	GO:0043066: negative regulation of apoptotic process	5.68E-04
39	GO:0019483: beta-alanine biosynthetic process	5.68E-04
40	GO:0052542: defense response by callose deposition	5.68E-04
41	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.68E-04
42	GO:0019441: tryptophan catabolic process to kynurenine	5.68E-04
43	GO:0015914: phospholipid transport	5.68E-04
44	GO:0050684: regulation of mRNA processing	5.68E-04
45	GO:0050994: regulation of lipid catabolic process	5.68E-04
46	GO:0008219: cell death	6.64E-04
47	GO:0046777: protein autophosphorylation	6.69E-04
48	GO:0006886: intracellular protein transport	8.63E-04
49	GO:1900055: regulation of leaf senescence	9.22E-04
50	GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening	9.22E-04
51	GO:0032784: regulation of DNA-templated transcription, elongation	9.22E-04
52	GO:0010359: regulation of anion channel activity	9.22E-04
53	GO:0061158: 3'-UTR-mediated mRNA destabilization	9.22E-04
54	GO:0090630: activation of GTPase activity	9.22E-04
55	GO:2000034: regulation of seed maturation	9.22E-04
56	GO:0009225: nucleotide-sugar metabolic process	9.38E-04
57	GO:0072334: UDP-galactose transmembrane transport	1.32E-03
58	GO:0009399: nitrogen fixation	1.32E-03
59	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.32E-03
60	GO:0006012: galactose metabolic process	1.65E-03
61	GO:0033358: UDP-L-arabinose biosynthetic process	1.76E-03
62	GO:0010107: potassium ion import	1.76E-03
63	GO:0006370: 7-methylguanosine mRNA capping	1.76E-03
64	GO:0006542: glutamine biosynthetic process	1.76E-03
65	GO:0045227: capsule polysaccharide biosynthetic process	1.76E-03
66	GO:0033320: UDP-D-xylose biosynthetic process	1.76E-03
67	GO:0006090: pyruvate metabolic process	2.25E-03
68	GO:0005513: detection of calcium ion	2.25E-03
69	GO:0006461: protein complex assembly	2.25E-03
70	GO:0007029: endoplasmic reticulum organization	2.25E-03
71	GO:0018344: protein geranylgeranylation	2.25E-03
72	GO:0010225: response to UV-C	2.25E-03
73	GO:0006623: protein targeting to vacuole	2.61E-03
74	GO:0019252: starch biosynthetic process	2.61E-03
75	GO:1902456: regulation of stomatal opening	2.77E-03
76	GO:1900425: negative regulation of defense response to bacterium	2.77E-03
77	GO:0010337: regulation of salicylic acid metabolic process	2.77E-03
78	GO:0001731: formation of translation preinitiation complex	2.77E-03
79	GO:0048232: male gamete generation	2.77E-03
80	GO:0042732: D-xylose metabolic process	2.77E-03
81	GO:0018105: peptidyl-serine phosphorylation	2.89E-03
82	GO:0007264: small GTPase mediated signal transduction	2.98E-03
83	GO:0009738: abscisic acid-activated signaling pathway	3.04E-03
84	GO:0000911: cytokinesis by cell plate formation	3.33E-03
85	GO:0000338: protein deneddylation	3.93E-03
86	GO:0006400: tRNA modification	3.93E-03
87	GO:1902074: response to salt	3.93E-03
88	GO:0006955: immune response	3.93E-03
89	GO:0009819: drought recovery	4.56E-03
90	GO:1900150: regulation of defense response to fungus	4.56E-03
91	GO:0006875: cellular metal ion homeostasis	4.56E-03
92	GO:0030968: endoplasmic reticulum unfolded protein response	5.22E-03
93	GO:0043562: cellular response to nitrogen levels	5.22E-03
94	GO:0006972: hyperosmotic response	5.22E-03
95	GO:0010150: leaf senescence	5.59E-03
96	GO:0006499: N-terminal protein myristoylation	5.79E-03
97	GO:0009821: alkaloid biosynthetic process	5.92E-03
98	GO:0009051: pentose-phosphate shunt, oxidative branch	5.92E-03
99	GO:0009086: methionine biosynthetic process	6.64E-03
100	GO:0006995: cellular response to nitrogen starvation	7.40E-03
101	GO:0051026: chiasma assembly	7.40E-03
102	GO:0010629: negative regulation of gene expression	7.40E-03
103	GO:0030148: sphingolipid biosynthetic process	8.19E-03
104	GO:0000038: very long-chain fatty acid metabolic process	8.19E-03
105	GO:0045037: protein import into chloroplast stroma	9.00E-03
106	GO:0071365: cellular response to auxin stimulus	9.00E-03
107	GO:0010588: cotyledon vascular tissue pattern formation	9.85E-03
108	GO:0006626: protein targeting to mitochondrion	9.85E-03
109	GO:0006807: nitrogen compound metabolic process	9.85E-03
110	GO:0006108: malate metabolic process	9.85E-03
111	GO:0006446: regulation of translational initiation	1.07E-02
112	GO:0006364: rRNA processing	1.16E-02
113	GO:0010030: positive regulation of seed germination	1.16E-02
114	GO:0035556: intracellular signal transduction	1.31E-02
115	GO:0000027: ribosomal large subunit assembly	1.35E-02
116	GO:2000377: regulation of reactive oxygen species metabolic process	1.35E-02
117	GO:0016192: vesicle-mediated transport	1.37E-02
118	GO:0048367: shoot system development	1.42E-02
119	GO:0016575: histone deacetylation	1.45E-02
120	GO:0006874: cellular calcium ion homeostasis	1.45E-02
121	GO:0009737: response to abscisic acid	1.46E-02
122	GO:0051260: protein homooligomerization	1.55E-02
123	GO:0007131: reciprocal meiotic recombination	1.65E-02
124	GO:0007005: mitochondrion organization	1.65E-02
125	GO:0009742: brassinosteroid mediated signaling pathway	1.76E-02
126	GO:0071369: cellular response to ethylene stimulus	1.76E-02
127	GO:0042127: regulation of cell proliferation	1.86E-02
128	GO:0010501: RNA secondary structure unwinding	2.09E-02
129	GO:0010087: phloem or xylem histogenesis	2.09E-02
130	GO:0010118: stomatal movement	2.09E-02
131	GO:0010305: leaf vascular tissue pattern formation	2.20E-02
132	GO:0010182: sugar mediated signaling pathway	2.20E-02
133	GO:0006397: mRNA processing	2.21E-02
134	GO:0048544: recognition of pollen	2.32E-02
135	GO:0061025: membrane fusion	2.32E-02
136	GO:0042752: regulation of circadian rhythm	2.32E-02
137	GO:0009646: response to absence of light	2.32E-02
138	GO:0046686: response to cadmium ion	2.36E-02
139	GO:0009749: response to glucose	2.43E-02
140	GO:0002229: defense response to oomycetes	2.56E-02
141	GO:0000302: response to reactive oxygen species	2.56E-02
142	GO:0006635: fatty acid beta-oxidation	2.56E-02
143	GO:0006310: DNA recombination	2.93E-02
144	GO:0051607: defense response to virus	3.19E-02
145	GO:0006470: protein dephosphorylation	3.27E-02
146	GO:0007166: cell surface receptor signaling pathway	3.27E-02
147	GO:0009615: response to virus	3.32E-02
148	GO:0009414: response to water deprivation	3.33E-02
149	GO:0009651: response to salt stress	3.42E-02
150	GO:0010029: regulation of seed germination	3.46E-02
151	GO:0009816: defense response to bacterium, incompatible interaction	3.46E-02
152	GO:0009607: response to biotic stimulus	3.46E-02
153	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.46E-02
154	GO:0042128: nitrate assimilation	3.59E-02
155	GO:0016049: cell growth	3.87E-02
156	GO:0009832: plant-type cell wall biogenesis	4.16E-02
157	GO:0010119: regulation of stomatal movement	4.45E-02
158	GO:0009867: jasmonic acid mediated signaling pathway	4.75E-02
159	GO:0006970: response to osmotic stress	4.75E-02
160	GO:0016051: carbohydrate biosynthetic process	4.75E-02
161	GO:0015031: protein transport	4.87E-02
162	GO:0006099: tricarboxylic acid cycle	4.90E-02
163	GO:0007049: cell cycle	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0070577: lysine-acetylated histone binding	0.00E+00
2	GO:0098808: mRNA cap binding	0.00E+00
3	GO:0050220: prostaglandin-E synthase activity	0.00E+00
4	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
5	GO:0016504: peptidase activator activity	0.00E+00
6	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
7	GO:0015370: solute:sodium symporter activity	0.00E+00
8	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
9	GO:0003837: beta-ureidopropionase activity	0.00E+00
10	GO:0017137: Rab GTPase binding	7.21E-05
11	GO:0004040: amidase activity	7.21E-05
12	GO:0004747: ribokinase activity	1.45E-04
13	GO:0016301: kinase activity	1.92E-04
14	GO:0008865: fructokinase activity	2.41E-04
15	GO:0004674: protein serine/threonine kinase activity	2.48E-04
16	GO:0004815: aspartate-tRNA ligase activity	2.57E-04
17	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	2.57E-04
18	GO:0047150: betaine-homocysteine S-methyltransferase activity	2.57E-04
19	GO:0019707: protein-cysteine S-acyltransferase activity	2.57E-04
20	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.57E-04
21	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	2.57E-04
22	GO:0009931: calcium-dependent protein serine/threonine kinase activity	5.45E-04
23	GO:0004484: mRNA guanylyltransferase activity	5.68E-04
24	GO:0045140: inositol phosphoceramide synthase activity	5.68E-04
25	GO:0004061: arylformamidase activity	5.68E-04
26	GO:0004177: aminopeptidase activity	5.76E-04
27	GO:0004683: calmodulin-dependent protein kinase activity	5.83E-04
28	GO:0005096: GTPase activator activity	7.06E-04
29	GO:0005509: calcium ion binding	8.23E-04
30	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	9.22E-04
31	GO:0004557: alpha-galactosidase activity	9.22E-04
32	GO:0016805: dipeptidase activity	9.22E-04
33	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	9.22E-04
34	GO:0052692: raffinose alpha-galactosidase activity	9.22E-04
35	GO:0005093: Rab GDP-dissociation inhibitor activity	9.22E-04
36	GO:0004300: enoyl-CoA hydratase activity	1.32E-03
37	GO:0005524: ATP binding	1.48E-03
38	GO:0070628: proteasome binding	1.76E-03
39	GO:0004470: malic enzyme activity	1.76E-03
40	GO:0004930: G-protein coupled receptor activity	1.76E-03
41	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.76E-03
42	GO:0015204: urea transmembrane transporter activity	1.76E-03
43	GO:0015368: calcium:cation antiporter activity	1.76E-03
44	GO:0050373: UDP-arabinose 4-epimerase activity	1.76E-03
45	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.76E-03
46	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.76E-03
47	GO:0015369: calcium:proton antiporter activity	1.76E-03
48	GO:0005459: UDP-galactose transmembrane transporter activity	2.25E-03
49	GO:0008948: oxaloacetate decarboxylase activity	2.25E-03
50	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.25E-03
51	GO:0004356: glutamate-ammonia ligase activity	2.25E-03
52	GO:0010181: FMN binding	2.43E-03
53	GO:0008420: CTD phosphatase activity	2.77E-03
54	GO:0031593: polyubiquitin binding	2.77E-03
55	GO:0048040: UDP-glucuronate decarboxylase activity	2.77E-03
56	GO:0003978: UDP-glucose 4-epimerase activity	3.33E-03
57	GO:0070403: NAD+ binding	3.33E-03
58	GO:0008235: metalloexopeptidase activity	3.93E-03
59	GO:0004034: aldose 1-epimerase activity	4.56E-03
60	GO:0052747: sinapyl alcohol dehydrogenase activity	4.56E-03
61	GO:0015491: cation:cation antiporter activity	4.56E-03
62	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.56E-03
63	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.22E-03
64	GO:0005267: potassium channel activity	5.22E-03
65	GO:0005515: protein binding	5.78E-03
66	GO:0071949: FAD binding	5.92E-03
67	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.92E-03
68	GO:0008417: fucosyltransferase activity	5.92E-03
69	GO:0016844: strictosidine synthase activity	6.64E-03
70	GO:0004713: protein tyrosine kinase activity	7.40E-03
71	GO:0045551: cinnamyl-alcohol dehydrogenase activity	9.00E-03
72	GO:0004521: endoribonuclease activity	9.00E-03
73	GO:0000175: 3'-5'-exoribonuclease activity	9.85E-03
74	GO:0004022: alcohol dehydrogenase (NAD) activity	9.85E-03
75	GO:0004175: endopeptidase activity	1.07E-02
76	GO:0004535: poly(A)-specific ribonuclease activity	1.07E-02
77	GO:0004970: ionotropic glutamate receptor activity	1.16E-02
78	GO:0005217: intracellular ligand-gated ion channel activity	1.16E-02
79	GO:0004725: protein tyrosine phosphatase activity	1.25E-02
80	GO:0003954: NADH dehydrogenase activity	1.35E-02
81	GO:0004407: histone deacetylase activity	1.35E-02
82	GO:0061630: ubiquitin protein ligase activity	1.37E-02
83	GO:0004540: ribonuclease activity	1.55E-02
84	GO:0033612: receptor serine/threonine kinase binding	1.55E-02
85	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.55E-02
86	GO:0008408: 3'-5' exonuclease activity	1.55E-02
87	GO:0015035: protein disulfide oxidoreductase activity	1.70E-02
88	GO:0008026: ATP-dependent helicase activity	1.76E-02
89	GO:0003727: single-stranded RNA binding	1.86E-02
90	GO:0030246: carbohydrate binding	1.89E-02
91	GO:0003729: mRNA binding	2.18E-02
92	GO:0001085: RNA polymerase II transcription factor binding	2.20E-02
93	GO:0005516: calmodulin binding	2.23E-02
94	GO:0016853: isomerase activity	2.32E-02
95	GO:0015144: carbohydrate transmembrane transporter activity	2.48E-02
96	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.67E-02
97	GO:0005351: sugar:proton symporter activity	2.80E-02
98	GO:0016597: amino acid binding	3.19E-02
99	GO:0051213: dioxygenase activity	3.32E-02
100	GO:0008375: acetylglucosaminyltransferase activity	3.59E-02
101	GO:0004004: ATP-dependent RNA helicase activity	3.73E-02
102	GO:0008236: serine-type peptidase activity	3.87E-02
103	GO:0003824: catalytic activity	3.95E-02
104	GO:0008168: methyltransferase activity	4.26E-02
105	GO:0000166: nucleotide binding	4.28E-02
106	GO:0004222: metalloendopeptidase activity	4.30E-02
107	GO:0030145: manganese ion binding	4.45E-02
108	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.45E-02
109	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0008305: integrin complex	0.00E+00
2	GO:0019034: viral replication complex	0.00E+00
3	GO:0005829: cytosol	5.55E-06
4	GO:0005886: plasma membrane	4.99E-05
5	GO:0005794: Golgi apparatus	9.60E-05
6	GO:0016021: integral component of membrane	1.37E-04
7	GO:0045252: oxoglutarate dehydrogenase complex	2.57E-04
8	GO:0030014: CCR4-NOT complex	2.57E-04
9	GO:0000138: Golgi trans cisterna	2.57E-04
10	GO:0005783: endoplasmic reticulum	2.94E-04
11	GO:0005778: peroxisomal membrane	4.07E-04
12	GO:0017119: Golgi transport complex	4.99E-04
13	GO:0031304: intrinsic component of mitochondrial inner membrane	5.68E-04
14	GO:0005773: vacuole	8.84E-04
15	GO:0042406: extrinsic component of endoplasmic reticulum membrane	9.22E-04
16	GO:0030176: integral component of endoplasmic reticulum membrane	9.38E-04
17	GO:0043234: protein complex	1.04E-03
18	GO:0031902: late endosome membrane	1.10E-03
19	GO:0030658: transport vesicle membrane	1.32E-03
20	GO:0031461: cullin-RING ubiquitin ligase complex	1.32E-03
21	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.32E-03
22	GO:0005741: mitochondrial outer membrane	1.39E-03
23	GO:0005802: trans-Golgi network	2.10E-03
24	GO:0016020: membrane	2.57E-03
25	GO:0016282: eukaryotic 43S preinitiation complex	2.77E-03
26	GO:0033290: eukaryotic 48S preinitiation complex	3.33E-03
27	GO:0030173: integral component of Golgi membrane	3.33E-03
28	GO:0032580: Golgi cisterna membrane	3.38E-03
29	GO:0000794: condensed nuclear chromosome	3.93E-03
30	GO:0005777: peroxisome	4.10E-03
31	GO:0030131: clathrin adaptor complex	4.56E-03
32	GO:0000151: ubiquitin ligase complex	5.25E-03
33	GO:0008180: COP9 signalosome	5.92E-03
34	GO:0030665: clathrin-coated vesicle membrane	6.64E-03
35	GO:0030125: clathrin vesicle coat	7.40E-03
36	GO:0005789: endoplasmic reticulum membrane	7.67E-03
37	GO:0005768: endosome	9.18E-03
38	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.10E-02
39	GO:0005795: Golgi stack	1.16E-02
40	GO:0005769: early endosome	1.25E-02
41	GO:0005737: cytoplasm	1.39E-02
42	GO:0010008: endosome membrane	1.42E-02
43	GO:0005905: clathrin-coated pit	1.55E-02
44	GO:0005839: proteasome core complex	1.55E-02
45	GO:0000775: chromosome, centromeric region	1.65E-02
46	GO:0000790: nuclear chromatin	1.97E-02
47	GO:0009524: phragmoplast	2.19E-02
48	GO:0009504: cell plate	2.43E-02
49	GO:0005694: chromosome	2.68E-02
50	GO:0005887: integral component of plasma membrane	3.08E-02
51	GO:0005667: transcription factor complex	3.59E-02