Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G18170

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042821: pyridoxal biosynthetic process0.00E+00
2GO:0005996: monosaccharide metabolic process0.00E+00
3GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
4GO:0009106: lipoate metabolic process0.00E+00
5GO:0090042: tubulin deacetylation0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
8GO:0008298: intracellular mRNA localization0.00E+00
9GO:0070125: mitochondrial translational elongation0.00E+00
10GO:0009249: protein lipoylation0.00E+00
11GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
12GO:0009658: chloroplast organization1.48E-08
13GO:0006546: glycine catabolic process2.16E-07
14GO:0019464: glycine decarboxylation via glycine cleavage system2.16E-07
15GO:0019253: reductive pentose-phosphate cycle8.08E-07
16GO:0010275: NAD(P)H dehydrogenase complex assembly2.51E-06
17GO:0006000: fructose metabolic process9.11E-06
18GO:0015979: photosynthesis1.17E-05
19GO:0009773: photosynthetic electron transport in photosystem I1.94E-05
20GO:0009767: photosynthetic electron transport chain3.04E-05
21GO:0009107: lipoate biosynthetic process6.05E-05
22GO:0042026: protein refolding1.23E-04
23GO:0006810: transport1.24E-04
24GO:0016117: carotenoid biosynthetic process1.42E-04
25GO:0048564: photosystem I assembly2.06E-04
26GO:0009443: pyridoxal 5'-phosphate salvage2.32E-04
27GO:0006438: valyl-tRNA aminoacylation2.32E-04
28GO:0043609: regulation of carbon utilization2.32E-04
29GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.32E-04
30GO:0009657: plastid organization2.55E-04
31GO:0006002: fructose 6-phosphate metabolic process2.55E-04
32GO:0071482: cellular response to light stimulus2.55E-04
33GO:0009409: response to cold3.94E-04
34GO:0019684: photosynthesis, light reaction4.97E-04
35GO:0006352: DNA-templated transcription, initiation4.97E-04
36GO:0018119: peptidyl-cysteine S-nitrosylation4.97E-04
37GO:0080183: response to photooxidative stress5.15E-04
38GO:0030388: fructose 1,6-bisphosphate metabolic process5.15E-04
39GO:0010270: photosystem II oxygen evolving complex assembly5.15E-04
40GO:0046686: response to cadmium ion5.59E-04
41GO:0010207: photosystem II assembly7.26E-04
42GO:0009853: photorespiration7.38E-04
43GO:0090351: seedling development8.11E-04
44GO:0006518: peptide metabolic process8.37E-04
45GO:0006696: ergosterol biosynthetic process8.37E-04
46GO:0045910: negative regulation of DNA recombination8.37E-04
47GO:0009768: photosynthesis, light harvesting in photosystem I1.09E-03
48GO:0009052: pentose-phosphate shunt, non-oxidative branch1.19E-03
49GO:0033014: tetrapyrrole biosynthetic process1.19E-03
50GO:0010731: protein glutathionylation1.19E-03
51GO:0006424: glutamyl-tRNA aminoacylation1.19E-03
52GO:0016556: mRNA modification1.19E-03
53GO:2001141: regulation of RNA biosynthetic process1.19E-03
54GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.19E-03
55GO:0051085: chaperone mediated protein folding requiring cofactor1.19E-03
56GO:0010239: chloroplast mRNA processing1.19E-03
57GO:0061077: chaperone-mediated protein folding1.20E-03
58GO:0006730: one-carbon metabolic process1.31E-03
59GO:0080092: regulation of pollen tube growth1.31E-03
60GO:2000122: negative regulation of stomatal complex development1.59E-03
61GO:0071483: cellular response to blue light1.59E-03
62GO:0009902: chloroplast relocation1.59E-03
63GO:0010037: response to carbon dioxide1.59E-03
64GO:0015976: carbon utilization1.59E-03
65GO:0051781: positive regulation of cell division1.59E-03
66GO:0045727: positive regulation of translation1.59E-03
67GO:0006544: glycine metabolic process2.03E-03
68GO:0032543: mitochondrial translation2.03E-03
69GO:0010236: plastoquinone biosynthetic process2.03E-03
70GO:0006461: protein complex assembly2.03E-03
71GO:1902183: regulation of shoot apical meristem development2.03E-03
72GO:0016123: xanthophyll biosynthetic process2.03E-03
73GO:0006828: manganese ion transport2.50E-03
74GO:0032973: amino acid export2.50E-03
75GO:0010190: cytochrome b6f complex assembly2.50E-03
76GO:0006563: L-serine metabolic process2.50E-03
77GO:0042549: photosystem II stabilization2.50E-03
78GO:0070814: hydrogen sulfide biosynthetic process2.50E-03
79GO:0006458: 'de novo' protein folding3.00E-03
80GO:0017148: negative regulation of translation3.00E-03
81GO:0010196: nonphotochemical quenching3.54E-03
82GO:0009645: response to low light intensity stimulus3.54E-03
83GO:0043090: amino acid import3.54E-03
84GO:0009704: de-etiolation4.10E-03
85GO:0016559: peroxisome fission4.10E-03
86GO:0008610: lipid biosynthetic process4.10E-03
87GO:0018298: protein-chromophore linkage4.50E-03
88GO:0032544: plastid translation4.70E-03
89GO:0017004: cytochrome complex assembly4.70E-03
90GO:0006075: (1->3)-beta-D-glucan biosynthetic process4.70E-03
91GO:0010206: photosystem II repair5.32E-03
92GO:0080144: amino acid homeostasis5.32E-03
93GO:2000024: regulation of leaf development5.32E-03
94GO:0006783: heme biosynthetic process5.32E-03
95GO:0000902: cell morphogenesis5.32E-03
96GO:1900865: chloroplast RNA modification5.97E-03
97GO:0006779: porphyrin-containing compound biosynthetic process5.97E-03
98GO:0035999: tetrahydrofolate interconversion5.97E-03
99GO:0009970: cellular response to sulfate starvation6.65E-03
100GO:0006535: cysteine biosynthetic process from serine6.65E-03
101GO:0000103: sulfate assimilation6.65E-03
102GO:0006298: mismatch repair6.65E-03
103GO:0009089: lysine biosynthetic process via diaminopimelate7.35E-03
104GO:0006415: translational termination7.35E-03
105GO:0000272: polysaccharide catabolic process7.35E-03
106GO:0006816: calcium ion transport7.35E-03
107GO:0009744: response to sucrose7.36E-03
108GO:0045037: protein import into chloroplast stroma8.08E-03
109GO:0009636: response to toxic substance8.27E-03
110GO:0009735: response to cytokinin8.37E-03
111GO:0006006: glucose metabolic process8.84E-03
112GO:0006094: gluconeogenesis8.84E-03
113GO:0005986: sucrose biosynthetic process8.84E-03
114GO:0009416: response to light stimulus9.58E-03
115GO:0010020: chloroplast fission9.62E-03
116GO:0007031: peroxisome organization1.04E-02
117GO:0006636: unsaturated fatty acid biosynthetic process1.13E-02
118GO:0006096: glycolytic process1.18E-02
119GO:0009944: polarity specification of adaxial/abaxial axis1.21E-02
120GO:0019344: cysteine biosynthetic process1.21E-02
121GO:0009793: embryo development ending in seed dormancy1.27E-02
122GO:0006418: tRNA aminoacylation for protein translation1.30E-02
123GO:0016575: histone deacetylation1.30E-02
124GO:0016226: iron-sulfur cluster assembly1.48E-02
125GO:0007005: mitochondrion organization1.48E-02
126GO:0042631: cellular response to water deprivation1.87E-02
127GO:0008152: metabolic process1.95E-02
128GO:0008360: regulation of cell shape1.97E-02
129GO:0019252: starch biosynthetic process2.18E-02
130GO:0006413: translational initiation2.29E-02
131GO:0080156: mitochondrial mRNA modification2.29E-02
132GO:0007623: circadian rhythm2.46E-02
133GO:0071805: potassium ion transmembrane transport2.74E-02
134GO:0010286: heat acclimation2.74E-02
135GO:0042742: defense response to bacterium2.75E-02
136GO:0009627: systemic acquired resistance3.22E-02
137GO:0042128: nitrate assimilation3.22E-02
138GO:0009817: defense response to fungus, incompatible interaction3.59E-02
139GO:0008219: cell death3.59E-02
140GO:0006499: N-terminal protein myristoylation3.85E-02
141GO:0009407: toxin catabolic process3.85E-02
142GO:0010218: response to far red light3.85E-02
143GO:0010119: regulation of stomatal movement3.98E-02
144GO:0016051: carbohydrate biosynthetic process4.25E-02
145GO:0009637: response to blue light4.25E-02
146GO:0080167: response to karrikin4.69E-02
147GO:0006631: fatty acid metabolic process4.81E-02
RankGO TermAdjusted P value
1GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
2GO:0051721: protein phosphatase 2A binding0.00E+00
3GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
4GO:0042903: tubulin deacetylase activity0.00E+00
5GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
6GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
7GO:0046905: phytoene synthase activity0.00E+00
8GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
9GO:0043014: alpha-tubulin binding0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
12GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
13GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
14GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
15GO:0004326: tetrahydrofolylpolyglutamate synthase activity2.51E-06
16GO:0004375: glycine dehydrogenase (decarboxylating) activity2.08E-05
17GO:0001053: plastid sigma factor activity3.78E-05
18GO:0016987: sigma factor activity3.78E-05
19GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.23E-04
20GO:0009496: plastoquinol--plastocyanin reductase activity2.32E-04
21GO:0003867: 4-aminobutyrate transaminase activity2.32E-04
22GO:0004325: ferrochelatase activity2.32E-04
23GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.32E-04
24GO:0051996: squalene synthase activity2.32E-04
25GO:0010313: phytochrome binding2.32E-04
26GO:0004832: valine-tRNA ligase activity2.32E-04
27GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.32E-04
28GO:0005089: Rho guanyl-nucleotide exchange factor activity4.97E-04
29GO:0044183: protein binding involved in protein folding4.97E-04
30GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.15E-04
31GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.15E-04
32GO:0008967: phosphoglycolate phosphatase activity5.15E-04
33GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.15E-04
34GO:0050017: L-3-cyanoalanine synthase activity5.15E-04
35GO:0010291: carotene beta-ring hydroxylase activity5.15E-04
36GO:0017118: lipoyltransferase activity5.15E-04
37GO:0042389: omega-3 fatty acid desaturase activity5.15E-04
38GO:0004618: phosphoglycerate kinase activity5.15E-04
39GO:0010297: heteropolysaccharide binding5.15E-04
40GO:0016415: octanoyltransferase activity5.15E-04
41GO:0004047: aminomethyltransferase activity5.15E-04
42GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.15E-04
43GO:0016992: lipoate synthase activity8.37E-04
44GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity8.37E-04
45GO:0032947: protein complex scaffold8.37E-04
46GO:0004148: dihydrolipoyl dehydrogenase activity8.37E-04
47GO:0004751: ribose-5-phosphate isomerase activity8.37E-04
48GO:0030267: glyoxylate reductase (NADP) activity8.37E-04
49GO:0004781: sulfate adenylyltransferase (ATP) activity8.37E-04
50GO:0070402: NADPH binding8.37E-04
51GO:0031409: pigment binding9.01E-04
52GO:0005528: FK506 binding9.95E-04
53GO:0015079: potassium ion transmembrane transporter activity1.09E-03
54GO:0051537: 2 iron, 2 sulfur cluster binding1.12E-03
55GO:0005198: structural molecule activity1.17E-03
56GO:0048487: beta-tubulin binding1.19E-03
57GO:0016149: translation release factor activity, codon specific1.19E-03
58GO:0004300: enoyl-CoA hydratase activity1.19E-03
59GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.19E-03
60GO:0048027: mRNA 5'-UTR binding1.19E-03
61GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.59E-03
62GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.59E-03
63GO:0004372: glycine hydroxymethyltransferase activity2.03E-03
64GO:0008374: O-acyltransferase activity2.03E-03
65GO:0005509: calcium ion binding2.09E-03
66GO:0051082: unfolded protein binding2.29E-03
67GO:0042578: phosphoric ester hydrolase activity2.50E-03
68GO:2001070: starch binding2.50E-03
69GO:0030983: mismatched DNA binding2.50E-03
70GO:0080030: methyl indole-3-acetate esterase activity2.50E-03
71GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.00E-03
72GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.00E-03
73GO:0004124: cysteine synthase activity3.00E-03
74GO:0019843: rRNA binding3.05E-03
75GO:0016168: chlorophyll binding3.65E-03
76GO:0004033: aldo-keto reductase (NADP) activity4.10E-03
77GO:0008236: serine-type peptidase activity4.28E-03
78GO:0004519: endonuclease activity4.56E-03
79GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.70E-03
80GO:0003843: 1,3-beta-D-glucan synthase activity4.70E-03
81GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.70E-03
82GO:0004222: metalloendopeptidase activity4.97E-03
83GO:0003747: translation release factor activity5.32E-03
84GO:0005384: manganese ion transmembrane transporter activity5.97E-03
85GO:0004364: glutathione transferase activity7.07E-03
86GO:0015386: potassium:proton antiporter activity7.35E-03
87GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.59E-03
88GO:0004089: carbonate dehydratase activity8.84E-03
89GO:0015095: magnesium ion transmembrane transporter activity8.84E-03
90GO:0031072: heat shock protein binding8.84E-03
91GO:0008266: poly(U) RNA binding9.62E-03
92GO:0003824: catalytic activity9.91E-03
93GO:0003899: DNA-directed 5'-3' RNA polymerase activity9.93E-03
94GO:0051536: iron-sulfur cluster binding1.21E-02
95GO:0004407: histone deacetylase activity1.21E-02
96GO:0043424: protein histidine kinase binding1.30E-02
97GO:0019706: protein-cysteine S-palmitoyltransferase activity1.39E-02
98GO:0003756: protein disulfide isomerase activity1.67E-02
99GO:0004812: aminoacyl-tRNA ligase activity1.77E-02
100GO:0030170: pyridoxal phosphate binding1.97E-02
101GO:0050662: coenzyme binding2.07E-02
102GO:0048038: quinone binding2.29E-02
103GO:0004518: nuclease activity2.40E-02
104GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.51E-02
105GO:0003684: damaged DNA binding2.62E-02
106GO:0008483: transaminase activity2.74E-02
107GO:0016597: amino acid binding2.86E-02
108GO:0003743: translation initiation factor activity2.87E-02
109GO:0042802: identical protein binding3.12E-02
110GO:0009931: calcium-dependent protein serine/threonine kinase activity3.22E-02
111GO:0004683: calmodulin-dependent protein kinase activity3.34E-02
112GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding3.47E-02
113GO:0015238: drug transmembrane transporter activity3.72E-02
114GO:0050897: cobalt ion binding3.98E-02
115GO:0003746: translation elongation factor activity4.25E-02
116GO:0000987: core promoter proximal region sequence-specific DNA binding4.39E-02
117GO:0016740: transferase activity4.52E-02
118GO:0050661: NADP binding4.67E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast4.55E-56
4GO:0009535: chloroplast thylakoid membrane2.59E-24
5GO:0009570: chloroplast stroma2.18E-21
6GO:0009941: chloroplast envelope6.01E-19
7GO:0009543: chloroplast thylakoid lumen4.90E-13
8GO:0009579: thylakoid1.18E-12
9GO:0009654: photosystem II oxygen evolving complex5.18E-10
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.23E-10
11GO:0030095: chloroplast photosystem II1.08E-08
12GO:0010319: stromule1.96E-08
13GO:0009534: chloroplast thylakoid4.81E-08
14GO:0031977: thylakoid lumen2.61E-07
15GO:0019898: extrinsic component of membrane3.21E-07
16GO:0031969: chloroplast membrane5.97E-07
17GO:0005960: glycine cleavage complex2.08E-05
18GO:0010287: plastoglobule5.66E-05
19GO:0005759: mitochondrial matrix1.05E-04
20GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.32E-04
21GO:0009782: photosystem I antenna complex2.32E-04
22GO:0009706: chloroplast inner membrane3.56E-04
23GO:0042170: plastid membrane5.15E-04
24GO:0000427: plastid-encoded plastid RNA polymerase complex5.15E-04
25GO:0030076: light-harvesting complex8.11E-04
26GO:0055035: plastid thylakoid membrane2.03E-03
27GO:0009512: cytochrome b6f complex2.03E-03
28GO:0009523: photosystem II2.24E-03
29GO:0009533: chloroplast stromal thylakoid3.54E-03
30GO:0048046: apoplast4.23E-03
31GO:0005779: integral component of peroxisomal membrane4.70E-03
32GO:0000148: 1,3-beta-D-glucan synthase complex4.70E-03
33GO:0009539: photosystem II reaction center4.70E-03
34GO:0016324: apical plasma membrane6.65E-03
35GO:0009508: plastid chromosome8.84E-03
36GO:0030659: cytoplasmic vesicle membrane9.62E-03
37GO:0042651: thylakoid membrane1.30E-02
38GO:0009532: plastid stroma1.39E-02
39GO:0016020: membrane1.80E-02
40GO:0005623: cell1.83E-02
41GO:0009522: photosystem I2.07E-02
42GO:0009295: nucleoid2.74E-02
43GO:0005778: peroxisomal membrane2.74E-02
44GO:0022626: cytosolic ribosome3.35E-02
45GO:0009707: chloroplast outer membrane3.59E-02
46GO:0009536: plastid3.71E-02
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Gene type



Gene DE type