Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G18060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033231: carbohydrate export0.00E+00
2GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
3GO:0018023: peptidyl-lysine trimethylation0.00E+00
4GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
5GO:1905421: regulation of plant organ morphogenesis0.00E+00
6GO:0030155: regulation of cell adhesion0.00E+00
7GO:0015979: photosynthesis5.02E-05
8GO:2000070: regulation of response to water deprivation5.40E-05
9GO:0010206: photosystem II repair8.49E-05
10GO:0015755: fructose transport9.69E-05
11GO:0043953: protein transport by the Tat complex9.69E-05
12GO:0046467: membrane lipid biosynthetic process9.69E-05
13GO:0010480: microsporocyte differentiation9.69E-05
14GO:0065002: intracellular protein transmembrane transport9.69E-05
15GO:1902458: positive regulation of stomatal opening9.69E-05
16GO:0010028: xanthophyll cycle9.69E-05
17GO:0034337: RNA folding9.69E-05
18GO:0000305: response to oxygen radical9.69E-05
19GO:1902334: fructose export from vacuole to cytoplasm9.69E-05
20GO:0010205: photoinhibition1.03E-04
21GO:0010207: photosystem II assembly2.19E-04
22GO:0035304: regulation of protein dephosphorylation2.28E-04
23GO:0018026: peptidyl-lysine monomethylation2.28E-04
24GO:0016122: xanthophyll metabolic process2.28E-04
25GO:1903426: regulation of reactive oxygen species biosynthetic process2.28E-04
26GO:0016050: vesicle organization3.80E-04
27GO:0048281: inflorescence morphogenesis3.80E-04
28GO:1902448: positive regulation of shade avoidance3.80E-04
29GO:0080170: hydrogen peroxide transmembrane transport5.46E-04
30GO:0043481: anthocyanin accumulation in tissues in response to UV light5.46E-04
31GO:0010148: transpiration5.46E-04
32GO:0051639: actin filament network formation5.46E-04
33GO:0015994: chlorophyll metabolic process7.26E-04
34GO:0010363: regulation of plant-type hypersensitive response7.26E-04
35GO:0006749: glutathione metabolic process7.26E-04
36GO:0042938: dipeptide transport7.26E-04
37GO:0009755: hormone-mediated signaling pathway7.26E-04
38GO:0051764: actin crosslink formation7.26E-04
39GO:0045038: protein import into chloroplast thylakoid membrane9.17E-04
40GO:0010438: cellular response to sulfur starvation9.17E-04
41GO:0007623: circadian rhythm9.96E-04
42GO:0010027: thylakoid membrane organization1.06E-03
43GO:0016554: cytidine to uridine editing1.12E-03
44GO:0010315: auxin efflux1.12E-03
45GO:0006655: phosphatidylglycerol biosynthetic process1.12E-03
46GO:0042549: photosystem II stabilization1.12E-03
47GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.12E-03
48GO:1901259: chloroplast rRNA processing1.34E-03
49GO:0031930: mitochondria-nucleus signaling pathway1.34E-03
50GO:0009942: longitudinal axis specification1.34E-03
51GO:0048437: floral organ development1.57E-03
52GO:0070370: cellular heat acclimation1.57E-03
53GO:1900057: positive regulation of leaf senescence1.57E-03
54GO:0010103: stomatal complex morphogenesis1.57E-03
55GO:0034599: cellular response to oxidative stress1.80E-03
56GO:0005978: glycogen biosynthetic process1.81E-03
57GO:0009819: drought recovery1.81E-03
58GO:0009642: response to light intensity1.81E-03
59GO:0010439: regulation of glucosinolate biosynthetic process1.81E-03
60GO:0030091: protein repair1.81E-03
61GO:0001558: regulation of cell growth2.07E-03
62GO:0007389: pattern specification process2.07E-03
63GO:0015996: chlorophyll catabolic process2.07E-03
64GO:0055085: transmembrane transport2.15E-03
65GO:0009926: auxin polar transport2.21E-03
66GO:1900865: chloroplast RNA modification2.61E-03
67GO:0043067: regulation of programmed cell death2.61E-03
68GO:0006995: cellular response to nitrogen starvation2.90E-03
69GO:0006857: oligopeptide transport3.17E-03
70GO:0009773: photosynthetic electron transport in photosystem I3.20E-03
71GO:0009682: induced systemic resistance3.20E-03
72GO:0019684: photosynthesis, light reaction3.20E-03
73GO:0009750: response to fructose3.20E-03
74GO:0048229: gametophyte development3.20E-03
75GO:0016024: CDP-diacylglycerol biosynthetic process3.50E-03
76GO:0015706: nitrate transport3.50E-03
77GO:0010105: negative regulation of ethylene-activated signaling pathway3.50E-03
78GO:0008361: regulation of cell size3.50E-03
79GO:0030048: actin filament-based movement3.82E-03
80GO:0010075: regulation of meristem growth3.82E-03
81GO:0006094: gluconeogenesis3.82E-03
82GO:0009934: regulation of meristem structural organization4.15E-03
83GO:0006979: response to oxidative stress4.43E-03
84GO:0071732: cellular response to nitric oxide4.49E-03
85GO:0006636: unsaturated fatty acid biosynthetic process4.83E-03
86GO:0009833: plant-type primary cell wall biogenesis4.83E-03
87GO:0006833: water transport4.83E-03
88GO:0009944: polarity specification of adaxial/abaxial axis5.19E-03
89GO:0051017: actin filament bundle assembly5.19E-03
90GO:0051302: regulation of cell division5.55E-03
91GO:0008299: isoprenoid biosynthetic process5.55E-03
92GO:0009734: auxin-activated signaling pathway5.68E-03
93GO:0055114: oxidation-reduction process5.87E-03
94GO:0051260: protein homooligomerization5.93E-03
95GO:0009814: defense response, incompatible interaction6.31E-03
96GO:0006633: fatty acid biosynthetic process6.59E-03
97GO:0071369: cellular response to ethylene stimulus6.70E-03
98GO:0001944: vasculature development6.70E-03
99GO:0009625: response to insect6.70E-03
100GO:0048443: stamen development7.10E-03
101GO:0009306: protein secretion7.10E-03
102GO:0070417: cellular response to cold7.51E-03
103GO:0034220: ion transmembrane transport7.93E-03
104GO:0048653: anther development7.93E-03
105GO:0009958: positive gravitropism8.35E-03
106GO:0009646: response to absence of light8.79E-03
107GO:0019252: starch biosynthetic process9.23E-03
108GO:0000302: response to reactive oxygen species9.68E-03
109GO:0010583: response to cyclopentenone1.01E-02
110GO:0071281: cellular response to iron ion1.06E-02
111GO:0010252: auxin homeostasis1.11E-02
112GO:0009639: response to red or far red light1.11E-02
113GO:0009567: double fertilization forming a zygote and endosperm1.11E-02
114GO:0071805: potassium ion transmembrane transport1.16E-02
115GO:0016311: dephosphorylation1.46E-02
116GO:0030244: cellulose biosynthetic process1.51E-02
117GO:0000160: phosphorelay signal transduction system1.57E-02
118GO:0045454: cell redox homeostasis1.67E-02
119GO:0009631: cold acclimation1.68E-02
120GO:0007568: aging1.68E-02
121GO:0009867: jasmonic acid mediated signaling pathway1.79E-02
122GO:0009637: response to blue light1.79E-02
123GO:0006631: fatty acid metabolic process2.02E-02
124GO:0006629: lipid metabolic process2.06E-02
125GO:0009640: photomorphogenesis2.14E-02
126GO:0009644: response to high light intensity2.27E-02
127GO:0009965: leaf morphogenesis2.33E-02
128GO:0009664: plant-type cell wall organization2.52E-02
129GO:0006364: rRNA processing2.65E-02
130GO:0006813: potassium ion transport2.65E-02
131GO:0009736: cytokinin-activated signaling pathway2.65E-02
132GO:0006096: glycolytic process2.99E-02
133GO:0009624: response to nematode3.41E-02
134GO:0009742: brassinosteroid mediated signaling pathway3.55E-02
135GO:0042744: hydrogen peroxide catabolic process4.38E-02
RankGO TermAdjusted P value
1GO:0046422: violaxanthin de-epoxidase activity0.00E+00
2GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
3GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
4GO:0015284: fructose uniporter activity0.00E+00
5GO:0051743: red chlorophyll catabolite reductase activity0.00E+00
6GO:0009977: proton motive force dependent protein transmembrane transporter activity4.96E-07
7GO:0010242: oxygen evolving activity9.69E-05
8GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity9.69E-05
9GO:0010329: auxin efflux transmembrane transporter activity1.93E-04
10GO:0005353: fructose transmembrane transporter activity2.28E-04
11GO:0004362: glutathione-disulfide reductase activity2.28E-04
12GO:0016868: intramolecular transferase activity, phosphotransferases2.28E-04
13GO:0004312: fatty acid synthase activity2.28E-04
14GO:0070402: NADPH binding3.80E-04
15GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity3.80E-04
16GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity5.46E-04
17GO:0010328: auxin influx transmembrane transporter activity7.26E-04
18GO:0019199: transmembrane receptor protein kinase activity7.26E-04
19GO:0008878: glucose-1-phosphate adenylyltransferase activity7.26E-04
20GO:0042277: peptide binding7.26E-04
21GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity7.26E-04
22GO:0016279: protein-lysine N-methyltransferase activity7.26E-04
23GO:0042936: dipeptide transporter activity7.26E-04
24GO:0045300: acyl-[acyl-carrier-protein] desaturase activity9.17E-04
25GO:0004130: cytochrome-c peroxidase activity1.12E-03
26GO:0035673: oligopeptide transmembrane transporter activity1.12E-03
27GO:0042578: phosphoric ester hydrolase activity1.12E-03
28GO:0004332: fructose-bisphosphate aldolase activity1.12E-03
29GO:0033743: peptide-methionine (R)-S-oxide reductase activity1.34E-03
30GO:0030145: manganese ion binding1.57E-03
31GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors2.33E-03
32GO:0009672: auxin:proton symporter activity2.61E-03
33GO:0047372: acylglycerol lipase activity3.20E-03
34GO:0015198: oligopeptide transporter activity3.50E-03
35GO:0031072: heat shock protein binding3.82E-03
36GO:0008266: poly(U) RNA binding4.15E-03
37GO:0003774: motor activity4.15E-03
38GO:0051119: sugar transmembrane transporter activity4.49E-03
39GO:0005215: transporter activity5.10E-03
40GO:0005528: FK506 binding5.19E-03
41GO:0015079: potassium ion transmembrane transporter activity5.55E-03
42GO:0033612: receptor serine/threonine kinase binding5.93E-03
43GO:0016760: cellulose synthase (UDP-forming) activity6.70E-03
44GO:0003756: protein disulfide isomerase activity7.10E-03
45GO:0016853: isomerase activity8.79E-03
46GO:0042626: ATPase activity, coupled to transmembrane movement of substances9.20E-03
47GO:0042802: identical protein binding9.20E-03
48GO:0019901: protein kinase binding9.23E-03
49GO:0000156: phosphorelay response regulator activity1.06E-02
50GO:0051015: actin filament binding1.06E-02
51GO:0016759: cellulose synthase activity1.11E-02
52GO:0005515: protein binding1.13E-02
53GO:0015250: water channel activity1.25E-02
54GO:0016168: chlorophyll binding1.30E-02
55GO:0016787: hydrolase activity1.39E-02
56GO:0003993: acid phosphatase activity1.85E-02
57GO:0050661: NADP binding1.96E-02
58GO:0005198: structural molecule activity2.33E-02
59GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.39E-02
60GO:0031625: ubiquitin protein ligase binding2.85E-02
61GO:0008289: lipid binding2.87E-02
62GO:0003729: mRNA binding3.07E-02
63GO:0003779: actin binding3.33E-02
64GO:0051082: unfolded protein binding3.41E-02
65GO:0016746: transferase activity, transferring acyl groups3.48E-02
66GO:0019843: rRNA binding4.00E-02
67GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.78E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0009507: chloroplast4.87E-23
3GO:0009534: chloroplast thylakoid3.19E-21
4GO:0009535: chloroplast thylakoid membrane2.54E-20
5GO:0009570: chloroplast stroma2.90E-09
6GO:0009941: chloroplast envelope3.45E-09
7GO:0009579: thylakoid2.62E-08
8GO:0009543: chloroplast thylakoid lumen1.22E-07
9GO:0031977: thylakoid lumen2.69E-07
10GO:0033281: TAT protein transport complex1.89E-06
11GO:0010287: plastoglobule3.01E-06
12GO:0030095: chloroplast photosystem II5.01E-06
13GO:0031361: integral component of thylakoid membrane9.69E-05
14GO:0009654: photosystem II oxygen evolving complex3.41E-04
15GO:0016021: integral component of membrane4.07E-04
16GO:0032432: actin filament bundle5.46E-04
17GO:0009522: photosystem I6.54E-04
18GO:0019898: extrinsic component of membrane6.99E-04
19GO:0009533: chloroplast stromal thylakoid1.57E-03
20GO:0008180: COP9 signalosome2.33E-03
21GO:0016459: myosin complex2.90E-03
22GO:0005884: actin filament3.20E-03
23GO:0032040: small-subunit processome3.50E-03
24GO:0016602: CCAAT-binding factor complex3.82E-03
25GO:0009508: plastid chromosome3.82E-03
26GO:0009523: photosystem II9.23E-03
27GO:0009295: nucleoid1.16E-02
28GO:0016020: membrane1.16E-02
29GO:0031969: chloroplast membrane1.39E-02
30GO:0019005: SCF ubiquitin ligase complex1.51E-02
31GO:0000502: proteasome complex2.65E-02
32GO:0005887: integral component of plasma membrane2.80E-02
33GO:0009706: chloroplast inner membrane3.41E-02
34GO:0005623: cell4.07E-02
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Gene type



Gene DE type