co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
2	GO:0042425: choline biosynthetic process	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
5	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
6	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
7	GO:0002184: cytoplasmic translational termination	0.00E+00
8	GO:0030155: regulation of cell adhesion	0.00E+00
9	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
10	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
11	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
12	GO:0090470: shoot organ boundary specification	0.00E+00
13	GO:0061635: regulation of protein complex stability	0.00E+00
14	GO:0000372: Group I intron splicing	0.00E+00
15	GO:0015979: photosynthesis	1.10E-13
16	GO:0010207: photosystem II assembly	9.76E-10
17	GO:0010027: thylakoid membrane organization	7.40E-09
18	GO:0015995: chlorophyll biosynthetic process	1.38E-08
19	GO:0009773: photosynthetic electron transport in photosystem I	2.11E-08
20	GO:0090391: granum assembly	5.26E-08
21	GO:0032544: plastid translation	2.81E-07
22	GO:0009735: response to cytokinin	3.24E-06
23	GO:0035304: regulation of protein dephosphorylation	6.07E-06
24	GO:0009772: photosynthetic electron transport in photosystem II	8.74E-06
25	GO:0010206: photosystem II repair	2.59E-05
26	GO:0010205: photoinhibition	3.44E-05
27	GO:0015994: chlorophyll metabolic process	8.29E-05
28	GO:0006412: translation	8.90E-05
29	GO:0045038: protein import into chloroplast thylakoid membrane	1.30E-04
30	GO:0042549: photosystem II stabilization	1.86E-04
31	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.86E-04
32	GO:0006655: phosphatidylglycerol biosynthetic process	1.86E-04
33	GO:0009658: chloroplast organization	2.13E-04
34	GO:0009306: protein secretion	3.19E-04
35	GO:0010196: nonphotochemical quenching	3.27E-04
36	GO:0043953: protein transport by the Tat complex	3.67E-04
37	GO:1904966: positive regulation of vitamin E biosynthetic process	3.67E-04
38	GO:0010480: microsporocyte differentiation	3.67E-04
39	GO:1904964: positive regulation of phytol biosynthetic process	3.67E-04
40	GO:0042371: vitamin K biosynthetic process	3.67E-04
41	GO:0065002: intracellular protein transmembrane transport	3.67E-04
42	GO:0043686: co-translational protein modification	3.67E-04
43	GO:1902458: positive regulation of stomatal opening	3.67E-04
44	GO:0010028: xanthophyll cycle	3.67E-04
45	GO:0071588: hydrogen peroxide mediated signaling pathway	3.67E-04
46	GO:0009090: homoserine biosynthetic process	3.67E-04
47	GO:0006754: ATP biosynthetic process	6.01E-04
48	GO:0018026: peptidyl-lysine monomethylation	8.00E-04
49	GO:0016122: xanthophyll metabolic process	8.00E-04
50	GO:0006729: tetrahydrobiopterin biosynthetic process	8.00E-04
51	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.00E-04
52	GO:0006568: tryptophan metabolic process	8.00E-04
53	GO:0030388: fructose 1,6-bisphosphate metabolic process	8.00E-04
54	GO:0010289: homogalacturonan biosynthetic process	8.00E-04
55	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.00E-04
56	GO:0080005: photosystem stoichiometry adjustment	8.00E-04
57	GO:1902326: positive regulation of chlorophyll biosynthetic process	8.00E-04
58	GO:1900871: chloroplast mRNA modification	8.00E-04
59	GO:0019684: photosynthesis, light reaction	9.51E-04
60	GO:0042254: ribosome biogenesis	1.06E-03
61	GO:0016024: CDP-diacylglycerol biosynthetic process	1.08E-03
62	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.29E-03
63	GO:0051604: protein maturation	1.29E-03
64	GO:0048281: inflorescence morphogenesis	1.29E-03
65	GO:1902448: positive regulation of shade avoidance	1.29E-03
66	GO:0006000: fructose metabolic process	1.29E-03
67	GO:0006518: peptide metabolic process	1.29E-03
68	GO:0034599: cellular response to oxidative stress	1.81E-03
69	GO:1901332: negative regulation of lateral root development	1.87E-03
70	GO:0010148: transpiration	1.87E-03
71	GO:2001141: regulation of RNA biosynthetic process	1.87E-03
72	GO:0009067: aspartate family amino acid biosynthetic process	1.87E-03
73	GO:0010371: regulation of gibberellin biosynthetic process	1.87E-03
74	GO:0071484: cellular response to light intensity	1.87E-03
75	GO:0010239: chloroplast mRNA processing	1.87E-03
76	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.87E-03
77	GO:0009409: response to cold	2.07E-03
78	GO:0010021: amylopectin biosynthetic process	2.51E-03
79	GO:0009765: photosynthesis, light harvesting	2.51E-03
80	GO:0006109: regulation of carbohydrate metabolic process	2.51E-03
81	GO:0045727: positive regulation of translation	2.51E-03
82	GO:0071369: cellular response to ethylene stimulus	2.77E-03
83	GO:0032543: mitochondrial translation	3.21E-03
84	GO:0006656: phosphatidylcholine biosynthetic process	3.21E-03
85	GO:0010236: plastoquinone biosynthetic process	3.21E-03
86	GO:0031365: N-terminal protein amino acid modification	3.21E-03
87	GO:0010438: cellular response to sulfur starvation	3.21E-03
88	GO:0006364: rRNA processing	3.46E-03
89	GO:0009759: indole glucosinolate biosynthetic process	3.96E-03
90	GO:0000470: maturation of LSU-rRNA	3.96E-03
91	GO:0016554: cytidine to uridine editing	3.96E-03
92	GO:0015986: ATP synthesis coupled proton transport	4.09E-03
93	GO:0019252: starch biosynthetic process	4.39E-03
94	GO:0000302: response to reactive oxygen species	4.70E-03
95	GO:0017148: negative regulation of translation	4.78E-03
96	GO:1901259: chloroplast rRNA processing	4.78E-03
97	GO:0009088: threonine biosynthetic process	4.78E-03
98	GO:0010019: chloroplast-nucleus signaling pathway	4.78E-03
99	GO:0042372: phylloquinone biosynthetic process	4.78E-03
100	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.78E-03
101	GO:0010103: stomatal complex morphogenesis	5.64E-03
102	GO:0009395: phospholipid catabolic process	5.64E-03
103	GO:0048528: post-embryonic root development	5.64E-03
104	GO:0070370: cellular heat acclimation	5.64E-03
105	GO:0048437: floral organ development	5.64E-03
106	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.64E-03
107	GO:1900057: positive regulation of leaf senescence	5.64E-03
108	GO:0009567: double fertilization forming a zygote and endosperm	5.69E-03
109	GO:0006605: protein targeting	6.56E-03
110	GO:0006353: DNA-templated transcription, termination	6.56E-03
111	GO:2000070: regulation of response to water deprivation	6.56E-03
112	GO:0010492: maintenance of shoot apical meristem identity	6.56E-03
113	GO:0016559: peroxisome fission	6.56E-03
114	GO:0048564: photosystem I assembly	6.56E-03
115	GO:0008610: lipid biosynthetic process	6.56E-03
116	GO:0005978: glycogen biosynthetic process	6.56E-03
117	GO:0009642: response to light intensity	6.56E-03
118	GO:0006002: fructose 6-phosphate metabolic process	7.52E-03
119	GO:0071482: cellular response to light stimulus	7.52E-03
120	GO:0001558: regulation of cell growth	7.52E-03
121	GO:0048507: meristem development	8.54E-03
122	GO:0000373: Group II intron splicing	8.54E-03
123	GO:0006779: porphyrin-containing compound biosynthetic process	9.60E-03
124	GO:0009086: methionine biosynthetic process	9.60E-03
125	GO:1900865: chloroplast RNA modification	9.60E-03
126	GO:0006535: cysteine biosynthetic process from serine	1.07E-02
127	GO:0006782: protoporphyrinogen IX biosynthetic process	1.07E-02
128	GO:0016051: carbohydrate biosynthetic process	1.13E-02
129	GO:0008285: negative regulation of cell proliferation	1.19E-02
130	GO:1903507: negative regulation of nucleic acid-templated transcription	1.19E-02
131	GO:0006352: DNA-templated transcription, initiation	1.19E-02
132	GO:0048229: gametophyte development	1.19E-02
133	GO:0009089: lysine biosynthetic process via diaminopimelate	1.19E-02
134	GO:0009073: aromatic amino acid family biosynthetic process	1.19E-02
135	GO:0043085: positive regulation of catalytic activity	1.19E-02
136	GO:0008152: metabolic process	1.31E-02
137	GO:0005983: starch catabolic process	1.31E-02
138	GO:0002213: defense response to insect	1.31E-02
139	GO:0009718: anthocyanin-containing compound biosynthetic process	1.43E-02
140	GO:0010075: regulation of meristem growth	1.43E-02
141	GO:0006094: gluconeogenesis	1.43E-02
142	GO:0005986: sucrose biosynthetic process	1.43E-02
143	GO:0019253: reductive pentose-phosphate cycle	1.56E-02
144	GO:0009934: regulation of meristem structural organization	1.56E-02
145	GO:0010020: chloroplast fission	1.56E-02
146	GO:0005985: sucrose metabolic process	1.69E-02
147	GO:0071732: cellular response to nitric oxide	1.69E-02
148	GO:0006636: unsaturated fatty acid biosynthetic process	1.82E-02
149	GO:0000162: tryptophan biosynthetic process	1.82E-02
150	GO:0010025: wax biosynthetic process	1.82E-02
151	GO:0009664: plant-type cell wall organization	1.83E-02
152	GO:0019344: cysteine biosynthetic process	1.96E-02
153	GO:0009944: polarity specification of adaxial/abaxial axis	1.96E-02
154	GO:0000027: ribosomal large subunit assembly	1.96E-02
155	GO:0010073: meristem maintenance	2.11E-02
156	GO:0051302: regulation of cell division	2.11E-02
157	GO:0008299: isoprenoid biosynthetic process	2.11E-02
158	GO:0006418: tRNA aminoacylation for protein translation	2.11E-02
159	GO:0016114: terpenoid biosynthetic process	2.25E-02
160	GO:0016998: cell wall macromolecule catabolic process	2.25E-02
161	GO:0035428: hexose transmembrane transport	2.40E-02
162	GO:0016226: iron-sulfur cluster assembly	2.40E-02
163	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.40E-02
164	GO:0001944: vasculature development	2.56E-02
165	GO:0010227: floral organ abscission	2.56E-02
166	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.56E-02
167	GO:0009561: megagametogenesis	2.71E-02
168	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.87E-02
169	GO:0042335: cuticle development	3.04E-02
170	GO:0080022: primary root development	3.04E-02
171	GO:0000413: protein peptidyl-prolyl isomerization	3.04E-02
172	GO:0015991: ATP hydrolysis coupled proton transport	3.04E-02
173	GO:0048653: anther development	3.04E-02
174	GO:0006662: glycerol ether metabolic process	3.20E-02
175	GO:0046323: glucose import	3.20E-02
176	GO:0045893: positive regulation of transcription, DNA-templated	3.26E-02
177	GO:0010183: pollen tube guidance	3.55E-02
178	GO:0032259: methylation	3.83E-02
179	GO:0042744: hydrogen peroxide catabolic process	3.99E-02
180	GO:0071281: cellular response to iron ion	4.08E-02
181	GO:1901657: glycosyl compound metabolic process	4.08E-02
182	GO:0030163: protein catabolic process	4.08E-02
183	GO:0009790: embryo development	4.09E-02
184	GO:0009828: plant-type cell wall loosening	4.27E-02
185	GO:0007623: circadian rhythm	4.83E-02
186	GO:0009451: RNA modification	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
4	GO:0004823: leucine-tRNA ligase activity	0.00E+00
5	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
6	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
7	GO:0005048: signal sequence binding	0.00E+00
8	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
9	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
10	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
11	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
12	GO:0010242: oxygen evolving activity	0.00E+00
13	GO:0019843: rRNA binding	2.03E-11
14	GO:0005528: FK506 binding	1.83E-07
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.22E-07
16	GO:0016851: magnesium chelatase activity	2.53E-07
17	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.07E-06
18	GO:0043023: ribosomal large subunit binding	4.69E-05
19	GO:0008266: poly(U) RNA binding	1.04E-04
20	GO:0004130: cytochrome-c peroxidase activity	1.86E-04
21	GO:0003735: structural constituent of ribosome	2.20E-04
22	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	3.67E-04
23	GO:0005080: protein kinase C binding	3.67E-04
24	GO:0042586: peptide deformylase activity	3.67E-04
25	GO:0045485: omega-6 fatty acid desaturase activity	3.67E-04
26	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.67E-04
27	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.67E-04
28	GO:0050139: nicotinate-N-glucosyltransferase activity	3.67E-04
29	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.67E-04
30	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.67E-04
31	GO:0004856: xylulokinase activity	3.67E-04
32	GO:0004412: homoserine dehydrogenase activity	8.00E-04
33	GO:0000234: phosphoethanolamine N-methyltransferase activity	8.00E-04
34	GO:0047746: chlorophyllase activity	8.00E-04
35	GO:0033201: alpha-1,4-glucan synthase activity	8.00E-04
36	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	8.00E-04
37	GO:0016630: protochlorophyllide reductase activity	8.00E-04
38	GO:0008236: serine-type peptidase activity	1.19E-03
39	GO:0031072: heat shock protein binding	1.23E-03
40	GO:0004751: ribose-5-phosphate isomerase activity	1.29E-03
41	GO:0070402: NADPH binding	1.29E-03
42	GO:0004373: glycogen (starch) synthase activity	1.29E-03
43	GO:0002161: aminoacyl-tRNA editing activity	1.29E-03
44	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.87E-03
45	GO:0004072: aspartate kinase activity	1.87E-03
46	GO:0019201: nucleotide kinase activity	1.87E-03
47	GO:0019199: transmembrane receptor protein kinase activity	2.51E-03
48	GO:0008878: glucose-1-phosphate adenylyltransferase activity	2.51E-03
49	GO:0043495: protein anchor	2.51E-03
50	GO:0042277: peptide binding	2.51E-03
51	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.51E-03
52	GO:0004659: prenyltransferase activity	2.51E-03
53	GO:0016279: protein-lysine N-methyltransferase activity	2.51E-03
54	GO:0001053: plastid sigma factor activity	2.51E-03
55	GO:0004045: aminoacyl-tRNA hydrolase activity	2.51E-03
56	GO:0016987: sigma factor activity	2.51E-03
57	GO:0009011: starch synthase activity	2.51E-03
58	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.21E-03
59	GO:0004040: amidase activity	3.21E-03
60	GO:0003959: NADPH dehydrogenase activity	3.21E-03
61	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.33E-03
62	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.80E-03
63	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.96E-03
64	GO:0016688: L-ascorbate peroxidase activity	3.96E-03
65	GO:0042578: phosphoric ester hydrolase activity	3.96E-03
66	GO:0004124: cysteine synthase activity	4.78E-03
67	GO:0004017: adenylate kinase activity	4.78E-03
68	GO:0004620: phospholipase activity	5.64E-03
69	GO:0019899: enzyme binding	5.64E-03
70	GO:0016491: oxidoreductase activity	5.68E-03
71	GO:0016787: hydrolase activity	6.14E-03
72	GO:0043022: ribosome binding	6.56E-03
73	GO:0008312: 7S RNA binding	6.56E-03
74	GO:0016168: chlorophyll binding	7.19E-03
75	GO:0005509: calcium ion binding	8.05E-03
76	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	8.54E-03
77	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	8.54E-03
78	GO:0030234: enzyme regulator activity	1.07E-02
79	GO:0008047: enzyme activator activity	1.07E-02
80	GO:0015020: glucuronosyltransferase activity	1.07E-02
81	GO:0047372: acylglycerol lipase activity	1.19E-02
82	GO:0009982: pseudouridine synthase activity	1.43E-02
83	GO:0004565: beta-galactosidase activity	1.43E-02
84	GO:0042802: identical protein binding	1.48E-02
85	GO:0005525: GTP binding	1.91E-02
86	GO:0016788: hydrolase activity, acting on ester bonds	1.95E-02
87	GO:0003714: transcription corepressor activity	1.96E-02
88	GO:0051536: iron-sulfur cluster binding	1.96E-02
89	GO:0004857: enzyme inhibitor activity	1.96E-02
90	GO:0043424: protein histidine kinase binding	2.11E-02
91	GO:0033612: receptor serine/threonine kinase binding	2.25E-02
92	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.40E-02
93	GO:0022891: substrate-specific transmembrane transporter activity	2.56E-02
94	GO:0003723: RNA binding	2.65E-02
95	GO:0003756: protein disulfide isomerase activity	2.71E-02
96	GO:0051082: unfolded protein binding	2.81E-02
97	GO:0047134: protein-disulfide reductase activity	2.87E-02
98	GO:0004812: aminoacyl-tRNA ligase activity	2.87E-02
99	GO:0010181: FMN binding	3.37E-02
100	GO:0004791: thioredoxin-disulfide reductase activity	3.37E-02
101	GO:0016853: isomerase activity	3.37E-02
102	GO:0005355: glucose transmembrane transporter activity	3.37E-02
103	GO:0050662: coenzyme binding	3.37E-02
104	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.72E-02
105	GO:0004252: serine-type endopeptidase activity	3.89E-02
106	GO:0004518: nuclease activity	3.90E-02
107	GO:0000156: phosphorelay response regulator activity	4.08E-02
108	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.08E-02
109	GO:0016597: amino acid binding	4.64E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	4.17E-80
4	GO:0009570: chloroplast stroma	9.65E-46
5	GO:0009534: chloroplast thylakoid	1.65E-44
6	GO:0009535: chloroplast thylakoid membrane	1.18E-42
7	GO:0009941: chloroplast envelope	5.09E-32
8	GO:0009543: chloroplast thylakoid lumen	3.14E-27
9	GO:0009579: thylakoid	1.12E-26
10	GO:0031977: thylakoid lumen	6.68E-19
11	GO:0030095: chloroplast photosystem II	9.76E-10
12	GO:0009654: photosystem II oxygen evolving complex	4.56E-09
13	GO:0010287: plastoglobule	7.76E-09
14	GO:0033281: TAT protein transport complex	5.26E-08
15	GO:0010007: magnesium chelatase complex	5.26E-08
16	GO:0019898: extrinsic component of membrane	5.72E-08
17	GO:0005840: ribosome	1.89E-05
18	GO:0031969: chloroplast membrane	5.98E-05
19	GO:0055035: plastid thylakoid membrane	1.30E-04
20	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.86E-04
21	GO:0009533: chloroplast stromal thylakoid	3.27E-04
22	GO:0031361: integral component of thylakoid membrane	3.67E-04
23	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.67E-04
24	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.01E-04
25	GO:0043036: starch grain	8.00E-04
26	GO:0080085: signal recognition particle, chloroplast targeting	8.00E-04
27	GO:0030093: chloroplast photosystem I	8.00E-04
28	GO:0009509: chromoplast	1.29E-03
29	GO:0009544: chloroplast ATP synthase complex	2.51E-03
30	GO:0009526: plastid envelope	2.51E-03
31	GO:0009522: photosystem I	4.09E-03
32	GO:0009523: photosystem II	4.39E-03
33	GO:0016020: membrane	4.42E-03
34	GO:0009536: plastid	4.86E-03
35	GO:0009706: chloroplast inner membrane	5.43E-03
36	GO:0010319: stromule	6.05E-03
37	GO:0009295: nucleoid	6.05E-03
38	GO:0009501: amyloplast	6.56E-03
39	GO:0009538: photosystem I reaction center	6.56E-03
40	GO:0030529: intracellular ribonucleoprotein complex	6.80E-03
41	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.52E-03
42	GO:0008180: COP9 signalosome	8.54E-03
43	GO:0055028: cortical microtubule	1.07E-02
44	GO:0009508: plastid chromosome	1.43E-02
45	GO:0000312: plastid small ribosomal subunit	1.56E-02
46	GO:0042651: thylakoid membrane	2.11E-02
47	GO:0009532: plastid stroma	2.25E-02
48	GO:0048046: apoplast	4.68E-02