co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
2	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
3	GO:0090042: tubulin deacetylation	0.00E+00
4	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
5	GO:0042820: vitamin B6 catabolic process	0.00E+00
6	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
7	GO:0006399: tRNA metabolic process	0.00E+00
8	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
9	GO:0098586: cellular response to virus	0.00E+00
10	GO:0061635: regulation of protein complex stability	0.00E+00
11	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
12	GO:0042821: pyridoxal biosynthetic process	0.00E+00
13	GO:0009773: photosynthetic electron transport in photosystem I	5.43E-11
14	GO:0071482: cellular response to light stimulus	1.03E-07
15	GO:0015979: photosynthesis	1.90E-07
16	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.41E-06
17	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.41E-06
18	GO:0006000: fructose metabolic process	1.22E-05
19	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.76E-05
20	GO:0006094: gluconeogenesis	4.38E-05
21	GO:0005986: sucrose biosynthetic process	4.38E-05
22	GO:0010027: thylakoid membrane organization	4.40E-05
23	GO:0010021: amylopectin biosynthetic process	4.98E-05
24	GO:0018298: protein-chromophore linkage	7.32E-05
25	GO:0009853: photorespiration	1.13E-04
26	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.15E-04
27	GO:0016226: iron-sulfur cluster assembly	1.37E-04
28	GO:0009735: response to cytokinin	1.88E-04
29	GO:0010196: nonphotochemical quenching	2.07E-04
30	GO:0048564: photosystem I assembly	2.62E-04
31	GO:0009642: response to light intensity	2.62E-04
32	GO:0043953: protein transport by the Tat complex	2.72E-04
33	GO:1904966: positive regulation of vitamin E biosynthetic process	2.72E-04
34	GO:1904964: positive regulation of phytol biosynthetic process	2.72E-04
35	GO:0065002: intracellular protein transmembrane transport	2.72E-04
36	GO:0080093: regulation of photorespiration	2.72E-04
37	GO:0031998: regulation of fatty acid beta-oxidation	2.72E-04
38	GO:0009443: pyridoxal 5'-phosphate salvage	2.72E-04
39	GO:0006002: fructose 6-phosphate metabolic process	3.23E-04
40	GO:0009658: chloroplast organization	4.66E-04
41	GO:0080005: photosystem stoichiometry adjustment	5.99E-04
42	GO:1900871: chloroplast mRNA modification	5.99E-04
43	GO:0034755: iron ion transmembrane transport	5.99E-04
44	GO:0071457: cellular response to ozone	5.99E-04
45	GO:0009662: etioplast organization	5.99E-04
46	GO:0097054: L-glutamate biosynthetic process	5.99E-04
47	GO:1904143: positive regulation of carotenoid biosynthetic process	5.99E-04
48	GO:0046741: transport of virus in host, tissue to tissue	5.99E-04
49	GO:0006352: DNA-templated transcription, initiation	6.22E-04
50	GO:0055114: oxidation-reduction process	7.09E-04
51	GO:0009767: photosynthetic electron transport chain	8.06E-04
52	GO:0006954: inflammatory response	9.72E-04
53	GO:0016050: vesicle organization	9.72E-04
54	GO:0009416: response to light stimulus	9.72E-04
55	GO:0009768: photosynthesis, light harvesting in photosystem I	1.37E-03
56	GO:0043572: plastid fission	1.39E-03
57	GO:0055070: copper ion homeostasis	1.39E-03
58	GO:2001141: regulation of RNA biosynthetic process	1.39E-03
59	GO:0071484: cellular response to light intensity	1.39E-03
60	GO:0009152: purine ribonucleotide biosynthetic process	1.39E-03
61	GO:0046653: tetrahydrofolate metabolic process	1.39E-03
62	GO:0006537: glutamate biosynthetic process	1.39E-03
63	GO:0009800: cinnamic acid biosynthetic process	1.39E-03
64	GO:0008152: metabolic process	1.60E-03
65	GO:0006855: drug transmembrane transport	1.64E-03
66	GO:0071483: cellular response to blue light	1.86E-03
67	GO:0019676: ammonia assimilation cycle	1.86E-03
68	GO:0071486: cellular response to high light intensity	1.86E-03
69	GO:0019464: glycine decarboxylation via glycine cleavage system	1.86E-03
70	GO:0009765: photosynthesis, light harvesting	1.86E-03
71	GO:0006109: regulation of carbohydrate metabolic process	1.86E-03
72	GO:0045727: positive regulation of translation	1.86E-03
73	GO:0015994: chlorophyll metabolic process	1.86E-03
74	GO:0006544: glycine metabolic process	2.37E-03
75	GO:0006564: L-serine biosynthetic process	2.37E-03
76	GO:0006097: glyoxylate cycle	2.37E-03
77	GO:0035434: copper ion transmembrane transport	2.37E-03
78	GO:0006461: protein complex assembly	2.37E-03
79	GO:0071493: cellular response to UV-B	2.37E-03
80	GO:0006810: transport	2.71E-03
81	GO:0019252: starch biosynthetic process	2.82E-03
82	GO:0006559: L-phenylalanine catabolic process	2.93E-03
83	GO:0010190: cytochrome b6f complex assembly	2.93E-03
84	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.93E-03
85	GO:0006563: L-serine metabolic process	2.93E-03
86	GO:0042549: photosystem II stabilization	2.93E-03
87	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.93E-03
88	GO:0000470: maturation of LSU-rRNA	2.93E-03
89	GO:0009913: epidermal cell differentiation	2.93E-03
90	GO:0080167: response to karrikin	3.16E-03
91	GO:1901259: chloroplast rRNA processing	3.52E-03
92	GO:0009854: oxidative photosynthetic carbon pathway	3.52E-03
93	GO:0009645: response to low light intensity stimulus	4.15E-03
94	GO:0006400: tRNA modification	4.15E-03
95	GO:0015693: magnesium ion transport	4.15E-03
96	GO:0009704: de-etiolation	4.82E-03
97	GO:0009231: riboflavin biosynthetic process	4.82E-03
98	GO:0008610: lipid biosynthetic process	4.82E-03
99	GO:0005978: glycogen biosynthetic process	4.82E-03
100	GO:0009657: plastid organization	5.52E-03
101	GO:0032544: plastid translation	5.52E-03
102	GO:0015996: chlorophyll catabolic process	5.52E-03
103	GO:0019430: removal of superoxide radicals	5.52E-03
104	GO:0010206: photosystem II repair	6.25E-03
105	GO:0000373: Group II intron splicing	6.25E-03
106	GO:0006098: pentose-phosphate shunt	6.25E-03
107	GO:0005982: starch metabolic process	7.03E-03
108	GO:0010205: photoinhibition	7.03E-03
109	GO:0035999: tetrahydrofolate interconversion	7.03E-03
110	GO:0009637: response to blue light	7.20E-03
111	GO:0043085: positive regulation of catalytic activity	8.66E-03
112	GO:0006879: cellular iron ion homeostasis	8.66E-03
113	GO:0009750: response to fructose	8.66E-03
114	GO:0000038: very long-chain fatty acid metabolic process	8.66E-03
115	GO:0010114: response to red light	9.30E-03
116	GO:0005983: starch catabolic process	9.52E-03
117	GO:0009644: response to high light intensity	1.01E-02
118	GO:0010628: positive regulation of gene expression	1.04E-02
119	GO:0006108: malate metabolic process	1.04E-02
120	GO:0010020: chloroplast fission	1.13E-02
121	GO:0010207: photosystem II assembly	1.13E-02
122	GO:0019253: reductive pentose-phosphate cycle	1.13E-02
123	GO:0010143: cutin biosynthetic process	1.13E-02
124	GO:0005985: sucrose metabolic process	1.23E-02
125	GO:0090351: seedling development	1.23E-02
126	GO:0006364: rRNA processing	1.26E-02
127	GO:0006096: glycolytic process	1.49E-02
128	GO:0051302: regulation of cell division	1.53E-02
129	GO:0008299: isoprenoid biosynthetic process	1.53E-02
130	GO:0016575: histone deacetylation	1.53E-02
131	GO:0035428: hexose transmembrane transport	1.75E-02
132	GO:0045454: cell redox homeostasis	1.78E-02
133	GO:0055085: transmembrane transport	1.95E-02
134	GO:0009561: megagametogenesis	1.97E-02
135	GO:0016117: carotenoid biosynthetic process	2.09E-02
136	GO:0009409: response to cold	2.13E-02
137	GO:0032259: methylation	2.20E-02
138	GO:0042335: cuticle development	2.21E-02
139	GO:0042631: cellular response to water deprivation	2.21E-02
140	GO:0071472: cellular response to salt stress	2.33E-02
141	GO:0006662: glycerol ether metabolic process	2.33E-02
142	GO:0046323: glucose import	2.33E-02
143	GO:0009741: response to brassinosteroid	2.33E-02
144	GO:0048544: recognition of pollen	2.45E-02
145	GO:0006814: sodium ion transport	2.45E-02
146	GO:0009646: response to absence of light	2.45E-02
147	GO:0008654: phospholipid biosynthetic process	2.58E-02
148	GO:0046686: response to cadmium ion	2.69E-02
149	GO:0000302: response to reactive oxygen species	2.71E-02
150	GO:0016032: viral process	2.84E-02
151	GO:0032502: developmental process	2.84E-02
152	GO:0030163: protein catabolic process	2.97E-02
153	GO:0007623: circadian rhythm	3.10E-02
154	GO:0009567: double fertilization forming a zygote and endosperm	3.10E-02
155	GO:0009451: RNA modification	3.17E-02
156	GO:0001666: response to hypoxia	3.52E-02
157	GO:0016311: dephosphorylation	4.10E-02
158	GO:0010218: response to far red light	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0051721: protein phosphatase 2A binding	0.00E+00
2	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
3	GO:0042903: tubulin deacetylase activity	0.00E+00
4	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
5	GO:0043014: alpha-tubulin binding	0.00E+00
6	GO:0008465: glycerate dehydrogenase activity	0.00E+00
7	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
8	GO:0046608: carotenoid isomerase activity	0.00E+00
9	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
10	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.41E-06
11	GO:0070402: NADPH binding	1.22E-05
12	GO:0016168: chlorophyll binding	4.91E-05
13	GO:0001053: plastid sigma factor activity	4.98E-05
14	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.98E-05
15	GO:0016987: sigma factor activity	4.98E-05
16	GO:0008266: poly(U) RNA binding	5.34E-05
17	GO:0016491: oxidoreductase activity	1.84E-04
18	GO:0009496: plastoquinol--plastocyanin reductase activity	2.72E-04
19	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.72E-04
20	GO:0034256: chlorophyll(ide) b reductase activity	2.72E-04
21	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.72E-04
22	GO:0016041: glutamate synthase (ferredoxin) activity	2.72E-04
23	GO:0050139: nicotinate-N-glucosyltransferase activity	2.72E-04
24	GO:0048038: quinone binding	3.24E-04
25	GO:0008967: phosphoglycolate phosphatase activity	5.99E-04
26	GO:0047746: chlorophyllase activity	5.99E-04
27	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.99E-04
28	GO:0004617: phosphoglycerate dehydrogenase activity	5.99E-04
29	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	5.99E-04
30	GO:0004047: aminomethyltransferase activity	5.99E-04
31	GO:0033201: alpha-1,4-glucan synthase activity	5.99E-04
32	GO:0003844: 1,4-alpha-glucan branching enzyme activity	5.99E-04
33	GO:0015238: drug transmembrane transporter activity	7.80E-04
34	GO:0031072: heat shock protein binding	8.06E-04
35	GO:0032947: protein complex scaffold	9.72E-04
36	GO:0050307: sucrose-phosphate phosphatase activity	9.72E-04
37	GO:0003935: GTP cyclohydrolase II activity	9.72E-04
38	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.72E-04
39	GO:0008864: formyltetrahydrofolate deformylase activity	9.72E-04
40	GO:0016531: copper chaperone activity	9.72E-04
41	GO:0043169: cation binding	9.72E-04
42	GO:0004373: glycogen (starch) synthase activity	9.72E-04
43	GO:0019829: cation-transporting ATPase activity	9.72E-04
44	GO:0045548: phenylalanine ammonia-lyase activity	9.72E-04
45	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	9.72E-04
46	GO:0031409: pigment binding	1.12E-03
47	GO:0051536: iron-sulfur cluster binding	1.24E-03
48	GO:0005528: FK506 binding	1.24E-03
49	GO:0048487: beta-tubulin binding	1.39E-03
50	GO:0008508: bile acid:sodium symporter activity	1.39E-03
51	GO:0004176: ATP-dependent peptidase activity	1.50E-03
52	GO:0022891: substrate-specific transmembrane transporter activity	1.79E-03
53	GO:0009011: starch synthase activity	1.86E-03
54	GO:0043495: protein anchor	1.86E-03
55	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.86E-03
56	GO:0004045: aminoacyl-tRNA hydrolase activity	1.86E-03
57	GO:0016787: hydrolase activity	2.11E-03
58	GO:0051538: 3 iron, 4 sulfur cluster binding	2.37E-03
59	GO:0004372: glycine hydroxymethyltransferase activity	2.37E-03
60	GO:0004784: superoxide dismutase activity	2.93E-03
61	GO:0042578: phosphoric ester hydrolase activity	2.93E-03
62	GO:0016615: malate dehydrogenase activity	2.93E-03
63	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.93E-03
64	GO:0004332: fructose-bisphosphate aldolase activity	2.93E-03
65	GO:0030060: L-malate dehydrogenase activity	3.52E-03
66	GO:0019843: rRNA binding	4.10E-03
67	GO:0019899: enzyme binding	4.15E-03
68	GO:0004033: aldo-keto reductase (NADP) activity	4.82E-03
69	GO:0043022: ribosome binding	4.82E-03
70	GO:0005375: copper ion transmembrane transporter activity	5.52E-03
71	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.52E-03
72	GO:0015297: antiporter activity	5.83E-03
73	GO:0005381: iron ion transmembrane transporter activity	7.03E-03
74	GO:0008047: enzyme activator activity	7.82E-03
75	GO:0015386: potassium:proton antiporter activity	8.66E-03
76	GO:0008168: methyltransferase activity	1.03E-02
77	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.04E-02
78	GO:0004022: alcohol dehydrogenase (NAD) activity	1.04E-02
79	GO:0015095: magnesium ion transmembrane transporter activity	1.04E-02
80	GO:0004565: beta-galactosidase activity	1.04E-02
81	GO:0005198: structural molecule activity	1.05E-02
82	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.09E-02
83	GO:0051287: NAD binding	1.13E-02
84	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.26E-02
85	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.33E-02
86	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.33E-02
87	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.33E-02
88	GO:0004857: enzyme inhibitor activity	1.43E-02
89	GO:0004407: histone deacetylase activity	1.43E-02
90	GO:0005215: transporter activity	1.51E-02
91	GO:0015079: potassium ion transmembrane transporter activity	1.53E-02
92	GO:0043424: protein histidine kinase binding	1.53E-02
93	GO:0051082: unfolded protein binding	1.79E-02
94	GO:0016746: transferase activity, transferring acyl groups	1.85E-02
95	GO:0047134: protein-disulfide reductase activity	2.09E-02
96	GO:0046872: metal ion binding	2.12E-02
97	GO:0005355: glucose transmembrane transporter activity	2.45E-02
98	GO:0050662: coenzyme binding	2.45E-02
99	GO:0004791: thioredoxin-disulfide reductase activity	2.45E-02
100	GO:0016853: isomerase activity	2.45E-02
101	GO:0030170: pyridoxal phosphate binding	2.50E-02
102	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.97E-02
103	GO:0016791: phosphatase activity	3.10E-02
104	GO:0008237: metallopeptidase activity	3.24E-02
105	GO:0008483: transaminase activity	3.24E-02
106	GO:0016597: amino acid binding	3.38E-02
107	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.93E-02
108	GO:0004721: phosphoprotein phosphatase activity	3.95E-02
109	GO:0004222: metalloendopeptidase activity	4.55E-02
110	GO:0030145: manganese ion binding	4.71E-02
111	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0042579: microbody	0.00E+00
3	GO:0009571: proplastid stroma	0.00E+00
4	GO:0043235: receptor complex	0.00E+00
5	GO:0009507: chloroplast	8.88E-59
6	GO:0009535: chloroplast thylakoid membrane	3.74E-29
7	GO:0009570: chloroplast stroma	7.09E-21
8	GO:0009941: chloroplast envelope	1.05E-19
9	GO:0009534: chloroplast thylakoid	2.06E-19
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.37E-12
11	GO:0031969: chloroplast membrane	1.07E-07
12	GO:0009579: thylakoid	1.46E-06
13	GO:0042651: thylakoid membrane	1.04E-04
14	GO:0009543: chloroplast thylakoid lumen	1.06E-04
15	GO:0031977: thylakoid lumen	1.54E-04
16	GO:0016021: integral component of membrane	1.70E-04
17	GO:0009501: amyloplast	2.62E-04
18	GO:0031361: integral component of thylakoid membrane	2.72E-04
19	GO:0009782: photosystem I antenna complex	2.72E-04
20	GO:0009523: photosystem II	2.95E-04
21	GO:0010287: plastoglobule	6.66E-04
22	GO:0033281: TAT protein transport complex	9.72E-04
23	GO:0030076: light-harvesting complex	1.01E-03
24	GO:0009512: cytochrome b6f complex	2.37E-03
25	GO:0048046: apoplast	2.78E-03
26	GO:0010319: stromule	3.88E-03
27	GO:0009533: chloroplast stromal thylakoid	4.15E-03
28	GO:0030529: intracellular ribonucleoprotein complex	4.36E-03
29	GO:0016020: membrane	6.88E-03
30	GO:0009508: plastid chromosome	1.04E-02
31	GO:0030095: chloroplast photosystem II	1.13E-02
32	GO:0009654: photosystem II oxygen evolving complex	1.53E-02
33	GO:0009706: chloroplast inner membrane	1.79E-02
34	GO:0009522: photosystem I	2.45E-02
35	GO:0019898: extrinsic component of membrane	2.58E-02
36	GO:0043231: intracellular membrane-bounded organelle	2.62E-02
37	GO:0005759: mitochondrial matrix	2.82E-02
38	GO:0009295: nucleoid	3.24E-02
39	GO:0009707: chloroplast outer membrane	4.25E-02