GO Enrichment Analysis of Co-expressed Genes with
AT1G12230
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0043489: RNA stabilization | 1.30E-05 |
| 4 | GO:0006568: tryptophan metabolic process | 3.42E-05 |
| 5 | GO:0015979: photosynthesis | 9.23E-05 |
| 6 | GO:2001141: regulation of RNA biosynthetic process | 9.36E-05 |
| 7 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.53E-04 |
| 8 | GO:0071482: cellular response to light stimulus | 3.94E-04 |
| 9 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.96E-04 |
| 10 | GO:0006782: protoporphyrinogen IX biosynthetic process | 5.49E-04 |
| 11 | GO:0006352: DNA-templated transcription, initiation | 6.03E-04 |
| 12 | GO:0009451: RNA modification | 6.12E-04 |
| 13 | GO:0006412: translation | 1.02E-03 |
| 14 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.21E-03 |
| 15 | GO:0080022: primary root development | 1.41E-03 |
| 16 | GO:0009828: plant-type cell wall loosening | 1.94E-03 |
| 17 | GO:0015995: chlorophyll biosynthetic process | 2.43E-03 |
| 18 | GO:0009631: cold acclimation | 2.87E-03 |
| 19 | GO:0045087: innate immune response | 3.05E-03 |
| 20 | GO:0009637: response to blue light | 3.05E-03 |
| 21 | GO:0030001: metal ion transport | 3.33E-03 |
| 22 | GO:0010114: response to red light | 3.63E-03 |
| 23 | GO:0009664: plant-type cell wall organization | 4.23E-03 |
| 24 | GO:0006486: protein glycosylation | 4.44E-03 |
| 25 | GO:0006396: RNA processing | 5.77E-03 |
| 26 | GO:0006633: fatty acid biosynthetic process | 7.74E-03 |
| 27 | GO:0007623: circadian rhythm | 8.26E-03 |
| 28 | GO:0009826: unidimensional cell growth | 1.09E-02 |
| 29 | GO:0009658: chloroplast organization | 1.12E-02 |
| 30 | GO:0042254: ribosome biogenesis | 1.14E-02 |
| 31 | GO:0009793: embryo development ending in seed dormancy | 1.32E-02 |
| 32 | GO:0006397: mRNA processing | 1.77E-02 |
| 33 | GO:0008152: metabolic process | 1.85E-02 |
| 34 | GO:0009735: response to cytokinin | 2.43E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005528: FK506 binding | 9.24E-08 |
| 2 | GO:0019843: rRNA binding | 2.70E-07 |
| 3 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.86E-06 |
| 4 | GO:0008266: poly(U) RNA binding | 1.14E-05 |
| 5 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.30E-05 |
| 6 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.30E-05 |
| 7 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 3.42E-05 |
| 8 | GO:0001053: plastid sigma factor activity | 1.30E-04 |
| 9 | GO:0016836: hydro-lyase activity | 1.30E-04 |
| 10 | GO:0016987: sigma factor activity | 1.30E-04 |
| 11 | GO:0003735: structural constituent of ribosome | 2.30E-04 |
| 12 | GO:0003723: RNA binding | 3.47E-04 |
| 13 | GO:0008378: galactosyltransferase activity | 6.58E-04 |
| 14 | GO:0008483: transaminase activity | 2.02E-03 |
| 15 | GO:0016168: chlorophyll binding | 2.26E-03 |
| 16 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.44E-03 |
| 17 | GO:0005509: calcium ion binding | 5.24E-03 |
| 18 | GO:0016758: transferase activity, transferring hexosyl groups | 6.48E-03 |
| 19 | GO:0030170: pyridoxal phosphate binding | 7.10E-03 |
| 20 | GO:0016787: hydrolase activity | 1.22E-02 |
| 21 | GO:0004519: endonuclease activity | 1.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.36E-18 |
| 3 | GO:0009579: thylakoid | 1.20E-15 |
| 4 | GO:0009570: chloroplast stroma | 4.25E-15 |
| 5 | GO:0009941: chloroplast envelope | 1.08E-12 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 2.54E-11 |
| 7 | GO:0031977: thylakoid lumen | 2.03E-10 |
| 8 | GO:0009534: chloroplast thylakoid | 4.67E-10 |
| 9 | GO:0009535: chloroplast thylakoid membrane | 1.69E-09 |
| 10 | GO:0009547: plastid ribosome | 1.30E-05 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 1.96E-05 |
| 12 | GO:0019898: extrinsic component of membrane | 4.75E-05 |
| 13 | GO:0042644: chloroplast nucleoid | 4.45E-04 |
| 14 | GO:0000311: plastid large ribosomal subunit | 6.58E-04 |
| 15 | GO:0009508: plastid chromosome | 7.14E-04 |
| 16 | GO:0016020: membrane | 7.48E-04 |
| 17 | GO:0005840: ribosome | 7.62E-04 |
| 18 | GO:0000312: plastid small ribosomal subunit | 7.72E-04 |
| 19 | GO:0015935: small ribosomal subunit | 1.08E-03 |
| 20 | GO:0009522: photosystem I | 1.56E-03 |
| 21 | GO:0009295: nucleoid | 2.02E-03 |
| 22 | GO:0030529: intracellular ribonucleoprotein complex | 2.18E-03 |
| 23 | GO:0000139: Golgi membrane | 7.68E-03 |
| 24 | GO:0022627: cytosolic small ribosomal subunit | 1.01E-02 |
| 25 | GO:0043231: intracellular membrane-bounded organelle | 1.85E-02 |
| 26 | GO:0005618: cell wall | 2.26E-02 |
| 27 | GO:0022626: cytosolic ribosome | 2.51E-02 |
| 28 | GO:0005802: trans-Golgi network | 3.63E-02 |
| 29 | GO:0005768: endosome | 3.97E-02 |