Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G10900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
2GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
3GO:0070584: mitochondrion morphogenesis0.00E+00
4GO:0009768: photosynthesis, light harvesting in photosystem I1.67E-16
5GO:0018298: protein-chromophore linkage5.80E-14
6GO:0009645: response to low light intensity stimulus3.46E-11
7GO:0009644: response to high light intensity6.20E-09
8GO:0009769: photosynthesis, light harvesting in photosystem II1.92E-08
9GO:0015979: photosynthesis2.99E-08
10GO:0009416: response to light stimulus4.00E-07
11GO:0010114: response to red light4.04E-07
12GO:0010218: response to far red light1.13E-05
13GO:0009637: response to blue light1.43E-05
14GO:0015812: gamma-aminobutyric acid transport3.00E-05
15GO:0010017: red or far-red light signaling pathway8.26E-05
16GO:0090153: regulation of sphingolipid biosynthetic process1.32E-04
17GO:1902448: positive regulation of shade avoidance1.32E-04
18GO:0007623: circadian rhythm1.35E-04
19GO:0030104: water homeostasis2.67E-04
20GO:0009765: photosynthesis, light harvesting2.67E-04
21GO:2000306: positive regulation of photomorphogenesis2.67E-04
22GO:0010600: regulation of auxin biosynthetic process2.67E-04
23GO:0080167: response to karrikin3.29E-04
24GO:0016123: xanthophyll biosynthetic process3.42E-04
25GO:0009635: response to herbicide4.20E-04
26GO:0045962: positive regulation of development, heterochronic4.20E-04
27GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.02E-04
28GO:0051510: regulation of unidimensional cell growth5.88E-04
29GO:0010161: red light signaling pathway5.88E-04
30GO:0009409: response to cold6.71E-04
31GO:0009704: de-etiolation6.76E-04
32GO:0010928: regulation of auxin mediated signaling pathway6.76E-04
33GO:0009827: plant-type cell wall modification7.68E-04
34GO:0007186: G-protein coupled receptor signaling pathway7.68E-04
35GO:0090333: regulation of stomatal closure8.63E-04
36GO:0048354: mucilage biosynthetic process involved in seed coat development9.61E-04
37GO:0009688: abscisic acid biosynthetic process1.06E-03
38GO:0018107: peptidyl-threonine phosphorylation1.38E-03
39GO:0009266: response to temperature stimulus1.50E-03
40GO:0090351: seedling development1.61E-03
41GO:0006874: cellular calcium ion homeostasis1.98E-03
42GO:0003333: amino acid transmembrane transport2.11E-03
43GO:0048511: rhythmic process2.11E-03
44GO:0009269: response to desiccation2.11E-03
45GO:0071215: cellular response to abscisic acid stimulus2.38E-03
46GO:0010182: sugar mediated signaling pathway2.94E-03
47GO:0009741: response to brassinosteroid2.94E-03
48GO:0006814: sodium ion transport3.09E-03
49GO:0006355: regulation of transcription, DNA-templated3.12E-03
50GO:0009791: post-embryonic development3.24E-03
51GO:0006351: transcription, DNA-templated3.28E-03
52GO:0044550: secondary metabolite biosynthetic process3.30E-03
53GO:0000302: response to reactive oxygen species3.40E-03
54GO:0048573: photoperiodism, flowering4.88E-03
55GO:0015995: chlorophyll biosynthetic process4.88E-03
56GO:0000160: phosphorelay signal transduction system5.41E-03
57GO:0006811: ion transport5.60E-03
58GO:0010119: regulation of stomatal movement5.78E-03
59GO:0006865: amino acid transport5.97E-03
60GO:0009737: response to abscisic acid6.92E-03
61GO:0042542: response to hydrogen peroxide7.14E-03
62GO:0009735: response to cytokinin7.23E-03
63GO:0009640: photomorphogenesis7.34E-03
64GO:0009965: leaf morphogenesis7.96E-03
65GO:0055114: oxidation-reduction process8.25E-03
66GO:0035556: intracellular signal transduction8.35E-03
67GO:0006812: cation transport8.60E-03
68GO:0009585: red, far-red light phototransduction9.03E-03
69GO:0009909: regulation of flower development9.70E-03
70GO:0009624: response to nematode1.16E-02
71GO:0018105: peptidyl-serine phosphorylation1.18E-02
72GO:0009742: brassinosteroid mediated signaling pathway1.21E-02
73GO:0009651: response to salt stress1.23E-02
74GO:0009845: seed germination1.43E-02
75GO:0010228: vegetative to reproductive phase transition of meristem1.76E-02
76GO:0010468: regulation of gene expression1.93E-02
77GO:0009826: unidimensional cell growth2.26E-02
78GO:0006970: response to osmotic stress2.45E-02
79GO:0009723: response to ethylene2.58E-02
80GO:0048366: leaf development2.61E-02
81GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.78E-02
82GO:0045454: cell redox homeostasis3.08E-02
83GO:0045892: negative regulation of transcription, DNA-templated3.11E-02
84GO:0006468: protein phosphorylation3.52E-02
85GO:0006629: lipid metabolic process3.58E-02
86GO:0009408: response to heat3.58E-02
87GO:0009753: response to jasmonic acid3.76E-02
RankGO TermAdjusted P value
1GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
2GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
3GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
4GO:0031409: pigment binding6.97E-17
5GO:0016168: chlorophyll binding2.54E-14
6GO:0015185: gamma-aminobutyric acid transmembrane transporter activity3.00E-05
7GO:0008158: hedgehog receptor activity3.00E-05
8GO:0015180: L-alanine transmembrane transporter activity7.58E-05
9GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen8.82E-05
10GO:0010277: chlorophyllide a oxygenase [overall] activity1.32E-04
11GO:0015189: L-lysine transmembrane transporter activity1.97E-04
12GO:0015181: arginine transmembrane transporter activity1.97E-04
13GO:0005313: L-glutamate transmembrane transporter activity2.67E-04
14GO:0004930: G-protein coupled receptor activity2.67E-04
15GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen3.42E-04
16GO:0046872: metal ion binding3.51E-04
17GO:0051537: 2 iron, 2 sulfur cluster binding5.52E-04
18GO:0015171: amino acid transmembrane transporter activity7.52E-04
19GO:0071949: FAD binding8.63E-04
20GO:0047372: acylglycerol lipase activity1.16E-03
21GO:0004022: alcohol dehydrogenase (NAD) activity1.38E-03
22GO:0005315: inorganic phosphate transmembrane transporter activity1.38E-03
23GO:0004565: beta-galactosidase activity1.38E-03
24GO:0015297: antiporter activity1.54E-03
25GO:0003712: transcription cofactor activity1.61E-03
26GO:0004970: ionotropic glutamate receptor activity1.61E-03
27GO:0005217: intracellular ligand-gated ion channel activity1.61E-03
28GO:0005216: ion channel activity1.98E-03
29GO:0004707: MAP kinase activity2.11E-03
30GO:0008514: organic anion transmembrane transporter activity2.52E-03
31GO:0005506: iron ion binding2.61E-03
32GO:0004497: monooxygenase activity3.04E-03
33GO:0000156: phosphorelay response regulator activity3.71E-03
34GO:0004672: protein kinase activity4.32E-03
35GO:0004674: protein serine/threonine kinase activity4.69E-03
36GO:0015293: symporter activity7.96E-03
37GO:0005198: structural molecule activity7.96E-03
38GO:0016874: ligase activity1.11E-02
39GO:0019825: oxygen binding1.13E-02
40GO:0015035: protein disulfide oxidoreductase activity1.18E-02
41GO:0003677: DNA binding1.25E-02
42GO:0015144: carbohydrate transmembrane transporter activity1.54E-02
43GO:0005515: protein binding1.64E-02
44GO:0005351: sugar:proton symporter activity1.68E-02
45GO:0003700: transcription factor activity, sequence-specific DNA binding2.50E-02
46GO:0020037: heme binding2.54E-02
47GO:0016301: kinase activity2.96E-02
48GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.25E-02
49GO:0016787: hydrolase activity3.45E-02
50GO:0009055: electron carrier activity3.76E-02
51GO:0004519: endonuclease activity3.80E-02
RankGO TermAdjusted P value
1GO:0009522: photosystem I2.65E-15
2GO:0030076: light-harvesting complex2.01E-14
3GO:0010287: plastoglobule9.24E-14
4GO:0009535: chloroplast thylakoid membrane1.34E-11
5GO:0009941: chloroplast envelope3.33E-11
6GO:0009523: photosystem II1.65E-10
7GO:0009579: thylakoid7.74E-10
8GO:0009534: chloroplast thylakoid8.06E-10
9GO:0042651: thylakoid membrane7.41E-07
10GO:0009507: chloroplast4.69E-06
11GO:0009517: PSII associated light-harvesting complex II2.67E-04
12GO:0016020: membrane2.92E-04
13GO:0016021: integral component of membrane4.20E-04
14GO:0031966: mitochondrial membrane8.60E-03
15GO:0009706: chloroplast inner membrane1.16E-02
16GO:0031969: chloroplast membrane2.71E-02
17GO:0005887: integral component of plasma membrane4.44E-02
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Gene type



Gene DE type