co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G10830

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0061635: regulation of protein complex stability	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
6	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
7	GO:0015670: carbon dioxide transport	0.00E+00
8	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
9	GO:0006399: tRNA metabolic process	0.00E+00
10	GO:0002184: cytoplasmic translational termination	0.00E+00
11	GO:0015979: photosynthesis	4.97E-15
12	GO:0009773: photosynthetic electron transport in photosystem I	1.84E-12
13	GO:0010196: nonphotochemical quenching	5.80E-10
14	GO:0032544: plastid translation	2.74E-07
15	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.00E-06
16	GO:0010027: thylakoid membrane organization	6.04E-06
17	GO:0018298: protein-chromophore linkage	1.19E-05
18	GO:0090391: granum assembly	2.10E-05
19	GO:0009735: response to cytokinin	2.24E-05
20	GO:0009658: chloroplast organization	3.11E-05
21	GO:0055085: transmembrane transport	7.02E-05
22	GO:0045727: positive regulation of translation	8.19E-05
23	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.84E-04
24	GO:0051180: vitamin transport	3.65E-04
25	GO:0030974: thiamine pyrophosphate transport	3.65E-04
26	GO:0000481: maturation of 5S rRNA	3.65E-04
27	GO:0043686: co-translational protein modification	3.65E-04
28	GO:1902458: positive regulation of stomatal opening	3.65E-04
29	GO:0034337: RNA folding	3.65E-04
30	GO:0071588: hydrogen peroxide mediated signaling pathway	3.65E-04
31	GO:0080005: photosystem stoichiometry adjustment	7.94E-04
32	GO:0010115: regulation of abscisic acid biosynthetic process	7.94E-04
33	GO:0015893: drug transport	7.94E-04
34	GO:0034755: iron ion transmembrane transport	7.94E-04
35	GO:0006729: tetrahydrobiopterin biosynthetic process	7.94E-04
36	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.94E-04
37	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.94E-04
38	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.94E-04
39	GO:0006810: transport	8.37E-04
40	GO:0043085: positive regulation of catalytic activity	9.42E-04
41	GO:0042254: ribosome biogenesis	1.04E-03
42	GO:0009767: photosynthetic electron transport chain	1.22E-03
43	GO:0006000: fructose metabolic process	1.29E-03
44	GO:0006954: inflammatory response	1.29E-03
45	GO:0006518: peptide metabolic process	1.29E-03
46	GO:0071492: cellular response to UV-A	1.29E-03
47	GO:0010207: photosystem II assembly	1.37E-03
48	GO:0006833: water transport	1.71E-03
49	GO:0034599: cellular response to oxidative stress	1.79E-03
50	GO:0080170: hydrogen peroxide transmembrane transport	1.85E-03
51	GO:0006424: glutamyl-tRNA aminoacylation	1.85E-03
52	GO:1901332: negative regulation of lateral root development	1.85E-03
53	GO:0055070: copper ion homeostasis	1.85E-03
54	GO:2001141: regulation of RNA biosynthetic process	1.85E-03
55	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.85E-03
56	GO:0010371: regulation of gibberellin biosynthetic process	1.85E-03
57	GO:0071484: cellular response to light intensity	1.85E-03
58	GO:0009768: photosynthesis, light harvesting in photosystem I	2.09E-03
59	GO:0031408: oxylipin biosynthetic process	2.30E-03
60	GO:0006869: lipid transport	2.37E-03
61	GO:0006109: regulation of carbohydrate metabolic process	2.49E-03
62	GO:0031122: cytoplasmic microtubule organization	2.49E-03
63	GO:0071486: cellular response to high light intensity	2.49E-03
64	GO:0009765: photosynthesis, light harvesting	2.49E-03
65	GO:0009644: response to high light intensity	2.58E-03
66	GO:0016120: carotene biosynthetic process	3.18E-03
67	GO:0032543: mitochondrial translation	3.18E-03
68	GO:0006564: L-serine biosynthetic process	3.18E-03
69	GO:0010236: plastoquinone biosynthetic process	3.18E-03
70	GO:0045038: protein import into chloroplast thylakoid membrane	3.18E-03
71	GO:0031365: N-terminal protein amino acid modification	3.18E-03
72	GO:0035434: copper ion transmembrane transport	3.18E-03
73	GO:0006461: protein complex assembly	3.18E-03
74	GO:0042335: cuticle development	3.49E-03
75	GO:0034220: ion transmembrane transport	3.49E-03
76	GO:0000413: protein peptidyl-prolyl isomerization	3.49E-03
77	GO:0006662: glycerol ether metabolic process	3.76E-03
78	GO:0010182: sugar mediated signaling pathway	3.76E-03
79	GO:0010190: cytochrome b6f complex assembly	3.93E-03
80	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.93E-03
81	GO:0006561: proline biosynthetic process	3.93E-03
82	GO:0010405: arabinogalactan protein metabolic process	3.93E-03
83	GO:0042549: photosystem II stabilization	3.93E-03
84	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.74E-03
85	GO:0048280: vesicle fusion with Golgi apparatus	4.74E-03
86	GO:0030488: tRNA methylation	4.74E-03
87	GO:0010189: vitamin E biosynthetic process	4.74E-03
88	GO:0010019: chloroplast-nucleus signaling pathway	4.74E-03
89	GO:1900057: positive regulation of leaf senescence	5.60E-03
90	GO:0009645: response to low light intensity stimulus	5.60E-03
91	GO:0006400: tRNA modification	5.60E-03
92	GO:0009395: phospholipid catabolic process	5.60E-03
93	GO:0009772: photosynthetic electron transport in photosystem II	5.60E-03
94	GO:0080167: response to karrikin	6.14E-03
95	GO:0008610: lipid biosynthetic process	6.51E-03
96	GO:0009642: response to light intensity	6.51E-03
97	GO:0042255: ribosome assembly	6.51E-03
98	GO:0006605: protein targeting	6.51E-03
99	GO:0032508: DNA duplex unwinding	6.51E-03
100	GO:2000070: regulation of response to water deprivation	6.51E-03
101	GO:0048564: photosystem I assembly	6.51E-03
102	GO:0007186: G-protein coupled receptor signaling pathway	7.47E-03
103	GO:0009657: plastid organization	7.47E-03
104	GO:0006002: fructose 6-phosphate metabolic process	7.47E-03
105	GO:0071482: cellular response to light stimulus	7.47E-03
106	GO:0015996: chlorophyll catabolic process	7.47E-03
107	GO:0015995: chlorophyll biosynthetic process	7.93E-03
108	GO:0045454: cell redox homeostasis	8.08E-03
109	GO:0009051: pentose-phosphate shunt, oxidative branch	8.47E-03
110	GO:0090305: nucleic acid phosphodiester bond hydrolysis	8.47E-03
111	GO:0010206: photosystem II repair	8.47E-03
112	GO:0006412: translation	9.06E-03
113	GO:0010205: photoinhibition	9.53E-03
114	GO:0006896: Golgi to vacuole transport	1.06E-02
115	GO:0019538: protein metabolic process	1.06E-02
116	GO:0009688: abscisic acid biosynthetic process	1.06E-02
117	GO:0007623: circadian rhythm	1.08E-02
118	GO:0009637: response to blue light	1.12E-02
119	GO:0008285: negative regulation of cell proliferation	1.18E-02
120	GO:0006879: cellular iron ion homeostasis	1.18E-02
121	GO:0006352: DNA-templated transcription, initiation	1.18E-02
122	GO:0000272: polysaccharide catabolic process	1.18E-02
123	GO:0009750: response to fructose	1.18E-02
124	GO:0018119: peptidyl-cysteine S-nitrosylation	1.18E-02
125	GO:0008152: metabolic process	1.29E-02
126	GO:0045037: protein import into chloroplast stroma	1.30E-02
127	GO:0010628: positive regulation of gene expression	1.42E-02
128	GO:0006006: glucose metabolic process	1.42E-02
129	GO:0009718: anthocyanin-containing compound biosynthetic process	1.42E-02
130	GO:0009725: response to hormone	1.42E-02
131	GO:0006094: gluconeogenesis	1.42E-02
132	GO:0005986: sucrose biosynthetic process	1.42E-02
133	GO:0010114: response to red light	1.44E-02
134	GO:0019253: reductive pentose-phosphate cycle	1.55E-02
135	GO:0055114: oxidation-reduction process	1.59E-02
136	GO:0009409: response to cold	1.66E-02
137	GO:0005985: sucrose metabolic process	1.68E-02
138	GO:0010025: wax biosynthetic process	1.81E-02
139	GO:0006636: unsaturated fatty acid biosynthetic process	1.81E-02
140	GO:0000027: ribosomal large subunit assembly	1.95E-02
141	GO:0006364: rRNA processing	1.95E-02
142	GO:0009695: jasmonic acid biosynthetic process	2.09E-02
143	GO:0010073: meristem maintenance	2.09E-02
144	GO:0061077: chaperone-mediated protein folding	2.24E-02
145	GO:0016998: cell wall macromolecule catabolic process	2.24E-02
146	GO:0006096: glycolytic process	2.31E-02
147	GO:0035428: hexose transmembrane transport	2.38E-02
148	GO:0010227: floral organ abscission	2.54E-02
149	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.57E-02
150	GO:0071555: cell wall organization	2.67E-02
151	GO:0006817: phosphate ion transport	2.69E-02
152	GO:0009306: protein secretion	2.69E-02
153	GO:0042147: retrograde transport, endosome to Golgi	2.85E-02
154	GO:0016117: carotenoid biosynthetic process	2.85E-02
155	GO:0042631: cellular response to water deprivation	3.01E-02
156	GO:0046323: glucose import	3.18E-02
157	GO:0045893: positive regulation of transcription, DNA-templated	3.21E-02
158	GO:0015986: ATP synthesis coupled proton transport	3.35E-02
159	GO:0006623: protein targeting to vacuole	3.52E-02
160	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.69E-02
161	GO:0071554: cell wall organization or biogenesis	3.69E-02
162	GO:0000302: response to reactive oxygen species	3.69E-02
163	GO:0006891: intra-Golgi vesicle-mediated transport	3.69E-02
164	GO:0032502: developmental process	3.87E-02
165	GO:1901657: glycosyl compound metabolic process	4.05E-02

Rank	GO Term	Adjusted P value
1	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
5	GO:1990534: thermospermine oxidase activity	0.00E+00
6	GO:0051738: xanthophyll binding	0.00E+00
7	GO:0045436: lycopene beta cyclase activity	0.00E+00
8	GO:0019843: rRNA binding	4.51E-10
9	GO:0016168: chlorophyll binding	8.82E-09
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.14E-07
11	GO:0022891: substrate-specific transmembrane transporter activity	5.20E-07
12	GO:0005528: FK506 binding	7.39E-06
13	GO:0043495: protein anchor	8.19E-05
14	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	8.19E-05
15	GO:0019899: enzyme binding	3.23E-04
16	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.65E-04
17	GO:0009496: plastoquinol--plastocyanin reductase activity	3.65E-04
18	GO:0008568: microtubule-severing ATPase activity	3.65E-04
19	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	3.65E-04
20	GO:0004321: fatty-acyl-CoA synthase activity	3.65E-04
21	GO:0042586: peptide deformylase activity	3.65E-04
22	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.65E-04
23	GO:0005080: protein kinase C binding	3.65E-04
24	GO:0004328: formamidase activity	3.65E-04
25	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.65E-04
26	GO:0050139: nicotinate-N-glucosyltransferase activity	3.65E-04
27	GO:0090422: thiamine pyrophosphate transporter activity	3.65E-04
28	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.94E-04
29	GO:0008967: phosphoglycolate phosphatase activity	7.94E-04
30	GO:0010297: heteropolysaccharide binding	7.94E-04
31	GO:0004617: phosphoglycerate dehydrogenase activity	7.94E-04
32	GO:0008047: enzyme activator activity	8.18E-04
33	GO:0016531: copper chaperone activity	1.29E-03
34	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.29E-03
35	GO:0019829: cation-transporting ATPase activity	1.29E-03
36	GO:0031409: pigment binding	1.71E-03
37	GO:0016851: magnesium chelatase activity	1.85E-03
38	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.85E-03
39	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.85E-03
40	GO:0043023: ribosomal large subunit binding	1.85E-03
41	GO:0001872: (1->3)-beta-D-glucan binding	1.85E-03
42	GO:0043424: protein histidine kinase binding	2.09E-03
43	GO:0016987: sigma factor activity	2.49E-03
44	GO:0052793: pectin acetylesterase activity	2.49E-03
45	GO:0001053: plastid sigma factor activity	2.49E-03
46	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.49E-03
47	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.49E-03
48	GO:0047134: protein-disulfide reductase activity	3.23E-03
49	GO:0005215: transporter activity	3.80E-03
50	GO:0004130: cytochrome-c peroxidase activity	3.93E-03
51	GO:0016688: L-ascorbate peroxidase activity	3.93E-03
52	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.93E-03
53	GO:0050662: coenzyme binding	4.05E-03
54	GO:0004791: thioredoxin-disulfide reductase activity	4.05E-03
55	GO:0051920: peroxiredoxin activity	4.74E-03
56	GO:0003735: structural constituent of ribosome	5.03E-03
57	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.29E-03
58	GO:0016491: oxidoreductase activity	5.55E-03
59	GO:0004620: phospholipase activity	5.60E-03
60	GO:0052747: sinapyl alcohol dehydrogenase activity	6.51E-03
61	GO:0004033: aldo-keto reductase (NADP) activity	6.51E-03
62	GO:0016209: antioxidant activity	6.51E-03
63	GO:0015250: water channel activity	6.72E-03
64	GO:0005375: copper ion transmembrane transporter activity	7.47E-03
65	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.47E-03
66	GO:0016207: 4-coumarate-CoA ligase activity	8.47E-03
67	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	8.47E-03
68	GO:0005381: iron ion transmembrane transporter activity	9.53E-03
69	GO:0003993: acid phosphatase activity	1.17E-02
70	GO:0047372: acylglycerol lipase activity	1.18E-02
71	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.30E-02
72	GO:0008378: galactosyltransferase activity	1.30E-02
73	GO:0004565: beta-galactosidase activity	1.42E-02
74	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.42E-02
75	GO:0004022: alcohol dehydrogenase (NAD) activity	1.42E-02
76	GO:0005315: inorganic phosphate transmembrane transporter activity	1.42E-02
77	GO:0031072: heat shock protein binding	1.42E-02
78	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.46E-02
79	GO:0042802: identical protein binding	1.46E-02
80	GO:0008131: primary amine oxidase activity	1.55E-02
81	GO:0008266: poly(U) RNA binding	1.55E-02
82	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.55E-02
83	GO:0016787: hydrolase activity	1.57E-02
84	GO:0015293: symporter activity	1.62E-02
85	GO:0008146: sulfotransferase activity	1.68E-02
86	GO:0008289: lipid binding	1.83E-02
87	GO:0016788: hydrolase activity, acting on ester bonds	1.92E-02
88	GO:0051536: iron-sulfur cluster binding	1.95E-02
89	GO:0004857: enzyme inhibitor activity	1.95E-02
90	GO:0004176: ATP-dependent peptidase activity	2.24E-02
91	GO:0005509: calcium ion binding	2.33E-02
92	GO:0030570: pectate lyase activity	2.54E-02
93	GO:0016874: ligase activity	2.62E-02
94	GO:0003727: single-stranded RNA binding	2.69E-02
95	GO:0008514: organic anion transmembrane transporter activity	2.69E-02
96	GO:0052689: carboxylic ester hydrolase activity	2.79E-02
97	GO:0015035: protein disulfide oxidoreductase activity	2.86E-02
98	GO:0003824: catalytic activity	3.12E-02
99	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.18E-02
100	GO:0005355: glucose transmembrane transporter activity	3.35E-02
101	GO:0016758: transferase activity, transferring hexosyl groups	3.38E-02
102	GO:0004872: receptor activity	3.52E-02
103	GO:0048038: quinone binding	3.69E-02
104	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.69E-02
105	GO:0004518: nuclease activity	3.87E-02
106	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.93E-02
107	GO:0030246: carbohydrate binding	4.04E-02
108	GO:0000156: phosphorelay response regulator activity	4.05E-02
109	GO:0016759: cellulose synthase activity	4.23E-02
110	GO:0016597: amino acid binding	4.61E-02
111	GO:0016413: O-acetyltransferase activity	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
3	GO:0009507: chloroplast	4.16E-61
4	GO:0009535: chloroplast thylakoid membrane	1.10E-38
5	GO:0009570: chloroplast stroma	6.45E-24
6	GO:0009543: chloroplast thylakoid lumen	7.62E-24
7	GO:0009941: chloroplast envelope	3.67E-23
8	GO:0009579: thylakoid	1.14E-22
9	GO:0009534: chloroplast thylakoid	5.21E-20
10	GO:0031977: thylakoid lumen	1.70E-15
11	GO:0009654: photosystem II oxygen evolving complex	4.41E-09
12	GO:0009523: photosystem II	5.53E-08
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.38E-07
14	GO:0019898: extrinsic component of membrane	1.88E-06
15	GO:0010287: plastoglobule	2.27E-06
16	GO:0030095: chloroplast photosystem II	3.50E-06
17	GO:0016021: integral component of membrane	6.68E-06
18	GO:0009533: chloroplast stromal thylakoid	8.59E-06
19	GO:0042651: thylakoid membrane	9.18E-06
20	GO:0046658: anchored component of plasma membrane	1.93E-05
21	GO:0010319: stromule	7.93E-05
22	GO:0031969: chloroplast membrane	3.33E-04
23	GO:0009782: photosystem I antenna complex	3.65E-04
24	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.65E-04
25	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.94E-04
26	GO:0005840: ribosome	1.09E-03
27	GO:0009528: plastid inner membrane	1.29E-03
28	GO:0010007: magnesium chelatase complex	1.29E-03
29	GO:0030076: light-harvesting complex	1.53E-03
30	GO:0009517: PSII associated light-harvesting complex II	2.49E-03
31	GO:0009527: plastid outer membrane	2.49E-03
32	GO:0009512: cytochrome b6f complex	3.18E-03
33	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.93E-03
34	GO:0016020: membrane	4.20E-03
35	GO:0009706: chloroplast inner membrane	5.36E-03
36	GO:0031225: anchored component of membrane	5.55E-03
37	GO:0012507: ER to Golgi transport vesicle membrane	6.51E-03
38	GO:0009539: photosystem II reaction center	7.47E-03
39	GO:0008180: COP9 signalosome	8.47E-03
40	GO:0048046: apoplast	8.48E-03
41	GO:0015934: large ribosomal subunit	1.02E-02
42	GO:0032040: small-subunit processome	1.30E-02
43	GO:0009536: plastid	1.37E-02
44	GO:0000312: plastid small ribosomal subunit	1.55E-02
45	GO:0015935: small ribosomal subunit	2.24E-02
46	GO:0009532: plastid stroma	2.24E-02
47	GO:0009522: photosystem I	3.35E-02