co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G09690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006412: translation	2.36E-116
2	GO:0042254: ribosome biogenesis	1.67E-43
3	GO:0000027: ribosomal large subunit assembly	1.43E-11
4	GO:0000028: ribosomal small subunit assembly	7.15E-07
5	GO:0002181: cytoplasmic translation	2.51E-06
6	GO:0006626: protein targeting to mitochondrion	5.86E-06
7	GO:0009955: adaxial/abaxial pattern specification	3.95E-05
8	GO:0009735: response to cytokinin	5.15E-05
9	GO:0030490: maturation of SSU-rRNA	1.14E-04
10	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.14E-04
11	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.14E-04
12	GO:0006407: rRNA export from nucleus	1.14E-04
13	GO:0009965: leaf morphogenesis	3.35E-04
14	GO:0042256: mature ribosome assembly	4.38E-04
15	GO:0090506: axillary shoot meristem initiation	4.38E-04
16	GO:0009409: response to cold	6.11E-04
17	GO:0070301: cellular response to hydrogen peroxide	6.29E-04
18	GO:0006241: CTP biosynthetic process	6.29E-04
19	GO:0006165: nucleoside diphosphate phosphorylation	6.29E-04
20	GO:0006228: UTP biosynthetic process	6.29E-04
21	GO:2000032: regulation of secondary shoot formation	8.35E-04
22	GO:0006183: GTP biosynthetic process	8.35E-04
23	GO:0006414: translational elongation	8.54E-04
24	GO:0071493: cellular response to UV-B	1.05E-03
25	GO:0016444: somatic cell DNA recombination	1.54E-03
26	GO:0000911: cytokinesis by cell plate formation	1.54E-03
27	GO:0009793: embryo development ending in seed dormancy	1.75E-03
28	GO:0009396: folic acid-containing compound biosynthetic process	1.81E-03
29	GO:0008283: cell proliferation	2.74E-03
30	GO:0009644: response to high light intensity	2.96E-03
31	GO:0000387: spliceosomal snRNP assembly	3.02E-03
32	GO:0035999: tetrahydrofolate interconversion	3.02E-03
33	GO:0010015: root morphogenesis	3.71E-03
34	GO:0006913: nucleocytoplasmic transport	3.71E-03
35	GO:0006820: anion transport	4.06E-03
36	GO:0010102: lateral root morphogenesis	4.43E-03
37	GO:0030150: protein import into mitochondrial matrix	6.03E-03
38	GO:0015992: proton transport	6.89E-03
39	GO:0006334: nucleosome assembly	6.89E-03
40	GO:0007005: mitochondrion organization	7.34E-03
41	GO:0009294: DNA mediated transformation	7.79E-03
42	GO:0032502: developmental process	1.18E-02
43	GO:0046686: response to cadmium ion	1.19E-02
44	GO:0009651: response to salt stress	1.20E-02
45	GO:0010090: trichome morphogenesis	1.24E-02
46	GO:0010252: auxin homeostasis	1.29E-02
47	GO:0006811: ion transport	1.89E-02
48	GO:0010043: response to zinc ion	1.96E-02
49	GO:0000724: double-strand break repair via homologous recombination	2.02E-02
50	GO:0009853: photorespiration	2.09E-02
51	GO:0015031: protein transport	3.31E-02
52	GO:0009620: response to fungus	3.73E-02
53	GO:0000398: mRNA splicing, via spliceosome	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0004316: 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity	0.00E+00
2	GO:0102132: 3-oxo-pimeloyl-[acp] methyl ester reductase activity	0.00E+00
3	GO:0003735: structural constituent of ribosome	1.01E-143
4	GO:0003729: mRNA binding	5.47E-27
5	GO:0019843: rRNA binding	4.80E-12
6	GO:0008097: 5S rRNA binding	5.94E-06
7	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.46E-04
8	GO:0070180: large ribosomal subunit rRNA binding	4.38E-04
9	GO:0070181: small ribosomal subunit rRNA binding	4.38E-04
10	GO:0004550: nucleoside diphosphate kinase activity	6.29E-04
11	GO:0015288: porin activity	2.09E-03
12	GO:0008308: voltage-gated anion channel activity	2.39E-03
13	GO:0015266: protein channel activity	4.43E-03
14	GO:0003746: translation elongation factor activity	2.09E-02
15	GO:0042393: histone binding	2.29E-02
16	GO:0051287: NAD binding	2.87E-02
17	GO:0003723: RNA binding	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0022626: cytosolic ribosome	7.58E-102
3	GO:0022625: cytosolic large ribosomal subunit	4.33E-98
4	GO:0005840: ribosome	2.23E-82
5	GO:0022627: cytosolic small ribosomal subunit	3.40E-36
6	GO:0005737: cytoplasm	6.96E-34
7	GO:0005730: nucleolus	6.11E-31
8	GO:0005829: cytosol	2.59E-27
9	GO:0009506: plasmodesma	2.82E-25
10	GO:0015934: large ribosomal subunit	1.04E-20
11	GO:0005774: vacuolar membrane	3.37E-16
12	GO:0016020: membrane	7.60E-14
13	GO:0005773: vacuole	2.71E-12
14	GO:0005618: cell wall	4.92E-08
15	GO:0009507: chloroplast	4.20E-07
16	GO:0005886: plasma membrane	2.14E-06
17	GO:0015935: small ribosomal subunit	1.80E-05
18	GO:0030686: 90S preribosome	1.14E-04
19	GO:0005758: mitochondrial intermembrane space	3.83E-04
20	GO:0034719: SMN-Sm protein complex	4.38E-04
21	GO:0005853: eukaryotic translation elongation factor 1 complex	4.38E-04
22	GO:0005682: U5 snRNP	8.35E-04
23	GO:0005687: U4 snRNP	1.05E-03
24	GO:0097526: spliceosomal tri-snRNP complex	1.05E-03
25	GO:0005689: U12-type spliceosomal complex	1.54E-03
26	GO:0071004: U2-type prespliceosome	2.09E-03
27	GO:0046930: pore complex	2.39E-03
28	GO:0005742: mitochondrial outer membrane translocase complex	2.39E-03
29	GO:0005685: U1 snRNP	2.70E-03
30	GO:0071011: precatalytic spliceosome	3.02E-03
31	GO:0005686: U2 snRNP	3.36E-03
32	GO:0071013: catalytic step 2 spliceosome	3.71E-03
33	GO:0005743: mitochondrial inner membrane	4.43E-03
34	GO:0019013: viral nucleocapsid	4.43E-03
35	GO:0005741: mitochondrial outer membrane	6.89E-03
36	GO:0005622: intracellular	2.08E-02
37	GO:0005681: spliceosomal complex	3.49E-02
38	GO:0005732: small nucleolar ribonucleoprotein complex	4.23E-02