Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G09390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0018160: peptidyl-pyrromethane cofactor linkage0.00E+00
3GO:0045014: negative regulation of transcription by glucose0.00E+00
4GO:0006782: protoporphyrinogen IX biosynthetic process1.07E-09
5GO:0015995: chlorophyll biosynthetic process3.04E-09
6GO:0006783: heme biosynthetic process1.38E-07
7GO:0009734: auxin-activated signaling pathway1.50E-05
8GO:0009735: response to cytokinin2.10E-05
9GO:0006779: porphyrin-containing compound biosynthetic process2.88E-05
10GO:0000476: maturation of 4.5S rRNA4.18E-05
11GO:0000967: rRNA 5'-end processing4.18E-05
12GO:0015671: oxygen transport4.18E-05
13GO:0009664: plant-type cell wall organization6.02E-05
14GO:0034470: ncRNA processing1.04E-04
15GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.45E-04
16GO:0009733: response to auxin1.54E-04
17GO:0045493: xylan catabolic process1.78E-04
18GO:0051513: regulation of monopolar cell growth2.63E-04
19GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.63E-04
20GO:0009828: plant-type cell wall loosening3.08E-04
21GO:0009765: photosynthesis, light harvesting3.53E-04
22GO:0007275: multicellular organism development4.48E-04
23GO:0009913: epidermal cell differentiation5.51E-04
24GO:0009942: longitudinal axis specification6.58E-04
25GO:0009926: auxin polar transport7.66E-04
26GO:0009645: response to low light intensity stimulus7.69E-04
27GO:0009769: photosynthesis, light harvesting in photosystem II7.69E-04
28GO:0050829: defense response to Gram-negative bacterium7.69E-04
29GO:0009642: response to light intensity8.84E-04
30GO:0046620: regulation of organ growth8.84E-04
31GO:0007389: pattern specification process1.00E-03
32GO:0010206: photosystem II repair1.13E-03
33GO:0048589: developmental growth1.13E-03
34GO:0009245: lipid A biosynthetic process1.13E-03
35GO:0019432: triglyceride biosynthetic process1.13E-03
36GO:0006949: syncytium formation1.39E-03
37GO:0043085: positive regulation of catalytic activity1.53E-03
38GO:0009698: phenylpropanoid metabolic process1.53E-03
39GO:0010152: pollen maturation1.67E-03
40GO:0090351: seedling development2.13E-03
41GO:0010030: positive regulation of seed germination2.13E-03
42GO:0040008: regulation of growth2.32E-03
43GO:0045490: pectin catabolic process2.42E-03
44GO:0009768: photosynthesis, light harvesting in photosystem I2.62E-03
45GO:0007017: microtubule-based process2.62E-03
46GO:0048511: rhythmic process2.80E-03
47GO:0009269: response to desiccation2.80E-03
48GO:0010082: regulation of root meristem growth3.15E-03
49GO:0048443: stamen development3.33E-03
50GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.52E-03
51GO:0009826: unidimensional cell growth3.59E-03
52GO:0042631: cellular response to water deprivation3.71E-03
53GO:0042335: cuticle development3.71E-03
54GO:0006662: glycerol ether metabolic process3.91E-03
55GO:0009741: response to brassinosteroid3.91E-03
56GO:0042752: regulation of circadian rhythm4.11E-03
57GO:0048825: cotyledon development4.31E-03
58GO:0010193: response to ozone4.51E-03
59GO:0010583: response to cyclopentenone4.72E-03
60GO:0010252: auxin homeostasis5.15E-03
61GO:0015979: photosynthesis5.25E-03
62GO:0010027: thylakoid membrane organization5.81E-03
63GO:0009627: systemic acquired resistance6.27E-03
64GO:0010411: xyloglucan metabolic process6.50E-03
65GO:0018298: protein-chromophore linkage6.98E-03
66GO:0000160: phosphorelay signal transduction system7.22E-03
67GO:0010218: response to far red light7.47E-03
68GO:0009637: response to blue light8.23E-03
69GO:0034599: cellular response to oxidative stress8.48E-03
70GO:0006631: fatty acid metabolic process9.28E-03
71GO:0010114: response to red light9.82E-03
72GO:0009644: response to high light intensity1.04E-02
73GO:0009736: cytokinin-activated signaling pathway1.21E-02
74GO:0009416: response to light stimulus1.21E-02
75GO:0010224: response to UV-B1.24E-02
76GO:0042545: cell wall modification1.52E-02
77GO:0009624: response to nematode1.55E-02
78GO:0009845: seed germination1.93E-02
79GO:0006633: fatty acid biosynthetic process2.14E-02
80GO:0007623: circadian rhythm2.29E-02
81GO:0009409: response to cold3.32E-02
82GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.74E-02
83GO:0046686: response to cadmium ion3.81E-02
84GO:0046777: protein autophosphorylation3.83E-02
85GO:0045454: cell redox homeostasis4.15E-02
86GO:0048364: root development4.96E-02
RankGO TermAdjusted P value
1GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
2GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
3GO:0004418: hydroxymethylbilane synthase activity0.00E+00
4GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
5GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
6GO:0005344: oxygen transporter activity4.18E-05
7GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity4.18E-05
8GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.04E-04
9GO:0009044: xylan 1,4-beta-xylosidase activity3.53E-04
10GO:0046556: alpha-L-arabinofuranosidase activity3.53E-04
11GO:0010011: auxin binding3.53E-04
12GO:0031177: phosphopantetheine binding5.51E-04
13GO:0004712: protein serine/threonine/tyrosine kinase activity6.54E-04
14GO:0000035: acyl binding6.58E-04
15GO:0016832: aldehyde-lyase activity6.58E-04
16GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process8.84E-04
17GO:0009672: auxin:proton symporter activity1.25E-03
18GO:0008047: enzyme activator activity1.39E-03
19GO:0031072: heat shock protein binding1.82E-03
20GO:0010329: auxin efflux transmembrane transporter activity1.82E-03
21GO:0031409: pigment binding2.29E-03
22GO:0030570: pectate lyase activity3.15E-03
23GO:0003756: protein disulfide isomerase activity3.33E-03
24GO:0047134: protein-disulfide reductase activity3.52E-03
25GO:0004791: thioredoxin-disulfide reductase activity4.11E-03
26GO:0000156: phosphorelay response regulator activity4.93E-03
27GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.93E-03
28GO:0005200: structural constituent of cytoskeleton5.36E-03
29GO:0016168: chlorophyll binding6.04E-03
30GO:0005096: GTPase activator activity7.22E-03
31GO:0016614: oxidoreductase activity, acting on CH-OH group of donors7.72E-03
32GO:0008289: lipid binding9.45E-03
33GO:0004185: serine-type carboxypeptidase activity9.82E-03
34GO:0045330: aspartyl esterase activity1.30E-02
35GO:0030599: pectinesterase activity1.49E-02
36GO:0051082: unfolded protein binding1.55E-02
37GO:0015035: protein disulfide oxidoreductase activity1.59E-02
38GO:0016829: lyase activity1.93E-02
39GO:0005515: protein binding1.95E-02
40GO:0046910: pectinesterase inhibitor activity2.18E-02
41GO:0004674: protein serine/threonine kinase activity3.40E-02
42GO:0050660: flavin adenine dinucleotide binding3.47E-02
43GO:0003924: GTPase activity4.81E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0009534: chloroplast thylakoid4.86E-09
4GO:0009535: chloroplast thylakoid membrane5.63E-08
5GO:0009507: chloroplast2.04E-06
6GO:0009570: chloroplast stroma4.87E-06
7GO:0009543: chloroplast thylakoid lumen1.56E-04
8GO:0009531: secondary cell wall2.63E-04
9GO:0009517: PSII associated light-harvesting complex II3.53E-04
10GO:0009941: chloroplast envelope4.87E-04
11GO:0009538: photosystem I reaction center8.84E-04
12GO:0045298: tubulin complex1.13E-03
13GO:0005618: cell wall1.52E-03
14GO:0010287: plastoglobule1.68E-03
15GO:0030095: chloroplast photosystem II1.97E-03
16GO:0030076: light-harvesting complex2.13E-03
17GO:0009579: thylakoid2.34E-03
18GO:0009522: photosystem I4.11E-03
19GO:0009523: photosystem II4.31E-03
20GO:0071944: cell periphery4.93E-03
21GO:0031977: thylakoid lumen9.28E-03
22GO:0005623: cell1.86E-02
23GO:0009505: plant-type cell wall3.07E-02
24GO:0005874: microtubule3.56E-02
25GO:0031969: chloroplast membrane3.65E-02
26GO:0005886: plasma membrane4.29E-02
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Gene type



Gene DE type