Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G09310

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0005996: monosaccharide metabolic process0.00E+00
2GO:0090042: tubulin deacetylation0.00E+00
3GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
4GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
5GO:0061635: regulation of protein complex stability0.00E+00
6GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
7GO:0045176: apical protein localization0.00E+00
8GO:0009773: photosynthetic electron transport in photosystem I2.32E-11
9GO:0015979: photosynthesis1.93E-10
10GO:1902326: positive regulation of chlorophyll biosynthetic process2.41E-06
11GO:0032544: plastid translation5.74E-06
12GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.00E-05
13GO:0045727: positive regulation of translation3.66E-05
14GO:0018298: protein-chromophore linkage4.48E-05
15GO:0010025: wax biosynthetic process5.10E-05
16GO:0009735: response to cytokinin9.42E-05
17GO:0006810: transport1.13E-04
18GO:0042335: cuticle development1.52E-04
19GO:0010196: nonphotochemical quenching1.57E-04
20GO:0070509: calcium ion import2.27E-04
21GO:0007263: nitric oxide mediated signal transduction2.27E-04
22GO:0080051: cutin transport2.27E-04
23GO:0033481: galacturonate biosynthetic process2.27E-04
24GO:0071588: hydrogen peroxide mediated signaling pathway2.27E-04
25GO:0000023: maltose metabolic process2.27E-04
26GO:0010027: thylakoid membrane organization3.74E-04
27GO:0015995: chlorophyll biosynthetic process4.63E-04
28GO:0000038: very long-chain fatty acid metabolic process4.83E-04
29GO:0043255: regulation of carbohydrate biosynthetic process5.05E-04
30GO:0009629: response to gravity5.05E-04
31GO:0015908: fatty acid transport5.05E-04
32GO:0015786: UDP-glucose transport5.05E-04
33GO:0007154: cell communication5.05E-04
34GO:0030388: fructose 1,6-bisphosphate metabolic process5.05E-04
35GO:0010275: NAD(P)H dehydrogenase complex assembly5.05E-04
36GO:0005983: starch catabolic process5.53E-04
37GO:0009767: photosynthetic electron transport chain6.27E-04
38GO:0006633: fatty acid biosynthetic process6.88E-04
39GO:0006869: lipid transport6.96E-04
40GO:0006518: peptide metabolic process8.21E-04
41GO:0051604: protein maturation8.21E-04
42GO:0015783: GDP-fucose transport8.21E-04
43GO:0006000: fructose metabolic process8.21E-04
44GO:0055085: transmembrane transport9.23E-04
45GO:0009768: photosynthesis, light harvesting in photosystem I1.06E-03
46GO:1901332: negative regulation of lateral root development1.17E-03
47GO:0016556: mRNA modification1.17E-03
48GO:0006020: inositol metabolic process1.17E-03
49GO:0072334: UDP-galactose transmembrane transport1.17E-03
50GO:0009809: lignin biosynthetic process1.41E-03
51GO:0009658: chloroplast organization1.53E-03
52GO:0006546: glycine catabolic process1.56E-03
53GO:0006021: inositol biosynthetic process1.56E-03
54GO:0010021: amylopectin biosynthetic process1.56E-03
55GO:0010222: stem vascular tissue pattern formation1.56E-03
56GO:0019464: glycine decarboxylation via glycine cleavage system1.56E-03
57GO:0009765: photosynthesis, light harvesting1.56E-03
58GO:0015994: chlorophyll metabolic process1.56E-03
59GO:0006656: phosphatidylcholine biosynthetic process1.99E-03
60GO:0006461: protein complex assembly1.99E-03
61GO:0080167: response to karrikin2.12E-03
62GO:0019252: starch biosynthetic process2.18E-03
63GO:0010190: cytochrome b6f complex assembly2.45E-03
64GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.45E-03
65GO:0010337: regulation of salicylic acid metabolic process2.45E-03
66GO:0046855: inositol phosphate dephosphorylation2.45E-03
67GO:0006014: D-ribose metabolic process2.45E-03
68GO:0010304: PSII associated light-harvesting complex II catabolic process2.45E-03
69GO:0048827: phyllome development2.45E-03
70GO:0042549: photosystem II stabilization2.45E-03
71GO:0009913: epidermal cell differentiation2.45E-03
72GO:0010019: chloroplast-nucleus signaling pathway2.94E-03
73GO:0050829: defense response to Gram-negative bacterium3.47E-03
74GO:0009645: response to low light intensity stimulus3.47E-03
75GO:0009704: de-etiolation4.02E-03
76GO:0010492: maintenance of shoot apical meristem identity4.02E-03
77GO:0048564: photosystem I assembly4.02E-03
78GO:0008610: lipid biosynthetic process4.02E-03
79GO:0009409: response to cold4.22E-03
80GO:0030244: cellulose biosynthetic process4.38E-03
81GO:0009657: plastid organization4.60E-03
82GO:0017004: cytochrome complex assembly4.60E-03
83GO:0006002: fructose 6-phosphate metabolic process4.60E-03
84GO:0010206: photosystem II repair5.22E-03
85GO:0048507: meristem development5.22E-03
86GO:0000373: Group II intron splicing5.22E-03
87GO:0010205: photoinhibition5.85E-03
88GO:1900865: chloroplast RNA modification5.85E-03
89GO:0042761: very long-chain fatty acid biosynthetic process5.85E-03
90GO:0006032: chitin catabolic process6.51E-03
91GO:0045036: protein targeting to chloroplast6.51E-03
92GO:0006415: translational termination7.20E-03
93GO:0000272: polysaccharide catabolic process7.20E-03
94GO:0018119: peptidyl-cysteine S-nitrosylation7.20E-03
95GO:0006790: sulfur compound metabolic process7.92E-03
96GO:0010229: inflorescence development8.66E-03
97GO:0006094: gluconeogenesis8.66E-03
98GO:0005986: sucrose biosynthetic process8.66E-03
99GO:0010588: cotyledon vascular tissue pattern formation8.66E-03
100GO:0009416: response to light stimulus9.16E-03
101GO:0019253: reductive pentose-phosphate cycle9.42E-03
102GO:0010540: basipetal auxin transport9.42E-03
103GO:0010143: cutin biosynthetic process9.42E-03
104GO:0006364: rRNA processing9.64E-03
105GO:0010167: response to nitrate1.02E-02
106GO:0005985: sucrose metabolic process1.02E-02
107GO:0046854: phosphatidylinositol phosphorylation1.02E-02
108GO:0010053: root epidermal cell differentiation1.02E-02
109GO:0009225: nucleotide-sugar metabolic process1.02E-02
110GO:0009825: multidimensional cell growth1.02E-02
111GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.06E-02
112GO:0009833: plant-type primary cell wall biogenesis1.10E-02
113GO:0019762: glucosinolate catabolic process1.10E-02
114GO:0009626: plant-type hypersensitive response1.22E-02
115GO:0007017: microtubule-based process1.27E-02
116GO:0009695: jasmonic acid biosynthetic process1.27E-02
117GO:0016575: histone deacetylation1.27E-02
118GO:0031408: oxylipin biosynthetic process1.36E-02
119GO:0016998: cell wall macromolecule catabolic process1.36E-02
120GO:0009269: response to desiccation1.36E-02
121GO:0009624: response to nematode1.38E-02
122GO:0016226: iron-sulfur cluster assembly1.45E-02
123GO:0035428: hexose transmembrane transport1.45E-02
124GO:0032259: methylation1.58E-02
125GO:0042391: regulation of membrane potential1.83E-02
126GO:0042631: cellular response to water deprivation1.83E-02
127GO:0046323: glucose import1.93E-02
128GO:0042744: hydrogen peroxide catabolic process1.97E-02
129GO:0006814: sodium ion transport2.03E-02
130GO:0048825: cotyledon development2.14E-02
131GO:0008654: phospholipid biosynthetic process2.14E-02
132GO:0009791: post-embryonic development2.14E-02
133GO:0000302: response to reactive oxygen species2.24E-02
134GO:0080156: mitochondrial mRNA modification2.24E-02
135GO:0007623: circadian rhythm2.38E-02
136GO:0009651: response to salt stress2.43E-02
137GO:0010090: trichome morphogenesis2.46E-02
138GO:0030163: protein catabolic process2.46E-02
139GO:0042742: defense response to bacterium2.64E-02
140GO:0071805: potassium ion transmembrane transport2.68E-02
141GO:0009911: positive regulation of flower development2.91E-02
142GO:0009816: defense response to bacterium, incompatible interaction3.03E-02
143GO:0009611: response to wounding3.51E-02
144GO:0009817: defense response to fungus, incompatible interaction3.52E-02
145GO:0009826: unidimensional cell growth3.55E-02
146GO:0010311: lateral root formation3.65E-02
147GO:0055114: oxidation-reduction process3.66E-02
148GO:0009407: toxin catabolic process3.77E-02
149GO:0010218: response to far red light3.77E-02
150GO:0009631: cold acclimation3.90E-02
151GO:0016051: carbohydrate biosynthetic process4.17E-02
152GO:0009637: response to blue light4.17E-02
153GO:0034599: cellular response to oxidative stress4.30E-02
154GO:0006631: fatty acid metabolic process4.71E-02
155GO:0046777: protein autophosphorylation4.86E-02
156GO:0010114: response to red light4.98E-02
RankGO TermAdjusted P value
1GO:0051721: protein phosphatase 2A binding0.00E+00
2GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
3GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
4GO:0042903: tubulin deacetylase activity0.00E+00
5GO:0043014: alpha-tubulin binding0.00E+00
6GO:0046408: chlorophyll synthetase activity0.00E+00
7GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
8GO:0051738: xanthophyll binding0.00E+00
9GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
10GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
11GO:0005363: maltose transmembrane transporter activity0.00E+00
12GO:0016168: chlorophyll binding1.17E-06
13GO:0043495: protein anchor3.66E-05
14GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.66E-05
15GO:0022891: substrate-specific transmembrane transporter activity1.06E-04
16GO:0019899: enzyme binding1.57E-04
17GO:0052747: sinapyl alcohol dehydrogenase activity2.00E-04
18GO:0004033: aldo-keto reductase (NADP) activity2.00E-04
19GO:0009496: plastoquinol--plastocyanin reductase activity2.27E-04
20GO:0003867: 4-aminobutyrate transaminase activity2.27E-04
21GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.27E-04
22GO:0004321: fatty-acyl-CoA synthase activity2.27E-04
23GO:0019203: carbohydrate phosphatase activity2.27E-04
24GO:0015245: fatty acid transporter activity2.27E-04
25GO:0030941: chloroplast targeting sequence binding2.27E-04
26GO:0005221: intracellular cyclic nucleotide activated cation channel activity2.27E-04
27GO:0050308: sugar-phosphatase activity2.27E-04
28GO:0052833: inositol monophosphate 4-phosphatase activity5.05E-04
29GO:0016630: protochlorophyllide reductase activity5.05E-04
30GO:0008967: phosphoglycolate phosphatase activity5.05E-04
31GO:0000234: phosphoethanolamine N-methyltransferase activity5.05E-04
32GO:0047746: chlorophyllase activity5.05E-04
33GO:0010297: heteropolysaccharide binding5.05E-04
34GO:0052832: inositol monophosphate 3-phosphatase activity5.05E-04
35GO:0033201: alpha-1,4-glucan synthase activity5.05E-04
36GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.05E-04
37GO:0008805: carbon-monoxide oxygenase activity5.05E-04
38GO:0008934: inositol monophosphate 1-phosphatase activity5.05E-04
39GO:0045551: cinnamyl-alcohol dehydrogenase activity5.53E-04
40GO:0004222: metalloendopeptidase activity5.98E-04
41GO:0005457: GDP-fucose transmembrane transporter activity8.21E-04
42GO:0070330: aromatase activity8.21E-04
43GO:0004373: glycogen (starch) synthase activity8.21E-04
44GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity8.21E-04
45GO:0102337: 3-oxo-cerotoyl-CoA synthase activity8.76E-04
46GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity8.76E-04
47GO:0031409: pigment binding8.76E-04
48GO:0102336: 3-oxo-arachidoyl-CoA synthase activity8.76E-04
49GO:0015079: potassium ion transmembrane transporter activity1.06E-03
50GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.13E-03
51GO:0048487: beta-tubulin binding1.17E-03
52GO:0016149: translation release factor activity, codon specific1.17E-03
53GO:0005460: UDP-glucose transmembrane transporter activity1.17E-03
54GO:0008508: bile acid:sodium symporter activity1.17E-03
55GO:0004375: glycine dehydrogenase (decarboxylating) activity1.17E-03
56GO:0009011: starch synthase activity1.56E-03
57GO:0050378: UDP-glucuronate 4-epimerase activity1.56E-03
58GO:0005319: lipid transporter activity1.56E-03
59GO:0051861: glycolipid binding1.56E-03
60GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.56E-03
61GO:0003959: NADPH dehydrogenase activity1.99E-03
62GO:0018685: alkane 1-monooxygenase activity1.99E-03
63GO:0005459: UDP-galactose transmembrane transporter activity1.99E-03
64GO:0050662: coenzyme binding2.03E-03
65GO:0016874: ligase activity2.05E-03
66GO:0048038: quinone binding2.33E-03
67GO:0004130: cytochrome-c peroxidase activity2.45E-03
68GO:0016688: L-ascorbate peroxidase activity2.45E-03
69GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.45E-03
70GO:2001070: starch binding2.45E-03
71GO:0004747: ribokinase activity2.94E-03
72GO:0005261: cation channel activity2.94E-03
73GO:0019843: rRNA binding2.94E-03
74GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.94E-03
75GO:0005242: inward rectifier potassium channel activity2.94E-03
76GO:0051920: peroxiredoxin activity2.94E-03
77GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.94E-03
78GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.94E-03
79GO:0008237: metallopeptidase activity2.99E-03
80GO:0008865: fructokinase activity4.02E-03
81GO:0016209: antioxidant activity4.02E-03
82GO:0009055: electron carrier activity4.27E-03
83GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.60E-03
84GO:0008138: protein tyrosine/serine/threonine phosphatase activity5.22E-03
85GO:0003747: translation release factor activity5.22E-03
86GO:0016207: 4-coumarate-CoA ligase activity5.22E-03
87GO:0008289: lipid binding6.33E-03
88GO:0030234: enzyme regulator activity6.51E-03
89GO:0004568: chitinase activity6.51E-03
90GO:0015386: potassium:proton antiporter activity7.20E-03
91GO:0047372: acylglycerol lipase activity7.20E-03
92GO:0004601: peroxidase activity7.71E-03
93GO:0051537: 2 iron, 2 sulfur cluster binding7.73E-03
94GO:0005262: calcium channel activity8.66E-03
95GO:0004565: beta-galactosidase activity8.66E-03
96GO:0003824: catalytic activity9.41E-03
97GO:0008266: poly(U) RNA binding9.42E-03
98GO:0030552: cAMP binding1.02E-02
99GO:0030553: cGMP binding1.02E-02
100GO:0051536: iron-sulfur cluster binding1.19E-02
101GO:0004407: histone deacetylase activity1.19E-02
102GO:0043424: protein histidine kinase binding1.27E-02
103GO:0005216: ion channel activity1.27E-02
104GO:0004176: ATP-dependent peptidase activity1.36E-02
105GO:0016746: transferase activity, transferring acyl groups1.42E-02
106GO:0030551: cyclic nucleotide binding1.83E-02
107GO:0005355: glucose transmembrane transporter activity2.03E-02
108GO:0015297: antiporter activity2.28E-02
109GO:0005509: calcium ion binding2.34E-02
110GO:0016791: phosphatase activity2.57E-02
111GO:0016759: cellulose synthase activity2.57E-02
112GO:0005200: structural constituent of cytoskeleton2.68E-02
113GO:0016722: oxidoreductase activity, oxidizing metal ions2.68E-02
114GO:0042802: identical protein binding3.03E-02
115GO:0009931: calcium-dependent protein serine/threonine kinase activity3.15E-02
116GO:0046872: metal ion binding3.20E-02
117GO:0030247: polysaccharide binding3.27E-02
118GO:0004683: calmodulin-dependent protein kinase activity3.27E-02
119GO:0008236: serine-type peptidase activity3.40E-02
120GO:0008168: methyltransferase activity3.55E-02
121GO:0015238: drug transmembrane transporter activity3.65E-02
122GO:0016491: oxidoreductase activity3.94E-02
123GO:0004672: protein kinase activity4.60E-02
124GO:0004364: glutathione transferase activity4.85E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009507: chloroplast2.08E-37
3GO:0009535: chloroplast thylakoid membrane2.06E-28
4GO:0009534: chloroplast thylakoid7.43E-18
5GO:0009941: chloroplast envelope6.53E-16
6GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.40E-14
7GO:0009579: thylakoid3.93E-08
8GO:0009570: chloroplast stroma4.03E-08
9GO:0016021: integral component of membrane1.31E-07
10GO:0010287: plastoglobule2.03E-07
11GO:0009523: photosystem II1.06E-05
12GO:0030095: chloroplast photosystem II3.55E-05
13GO:0048046: apoplast3.63E-05
14GO:0016020: membrane4.14E-05
15GO:0009543: chloroplast thylakoid lumen5.99E-05
16GO:0031969: chloroplast membrane6.62E-05
17GO:0042651: thylakoid membrane7.03E-05
18GO:0009654: photosystem II oxygen evolving complex7.03E-05
19GO:0009533: chloroplast stromal thylakoid1.57E-04
20GO:0019898: extrinsic component of membrane2.07E-04
21GO:0009344: nitrite reductase complex [NAD(P)H]2.27E-04
22GO:0009782: photosystem I antenna complex2.27E-04
23GO:0000427: plastid-encoded plastid RNA polymerase complex5.05E-04
24GO:0030076: light-harvesting complex7.89E-04
25GO:0009897: external side of plasma membrane8.21E-04
26GO:0009505: plant-type cell wall1.07E-03
27GO:0005960: glycine cleavage complex1.17E-03
28GO:0015630: microtubule cytoskeleton1.17E-03
29GO:0009517: PSII associated light-harvesting complex II1.56E-03
30GO:0009526: plastid envelope1.56E-03
31GO:0055035: plastid thylakoid membrane1.99E-03
32GO:0009512: cytochrome b6f complex1.99E-03
33GO:0010319: stromule2.99E-03
34GO:0031359: integral component of chloroplast outer membrane3.47E-03
35GO:0009501: amyloplast4.02E-03
36GO:0031977: thylakoid lumen6.58E-03
37GO:0009706: chloroplast inner membrane1.38E-02
38GO:0005770: late endosome1.93E-02
39GO:0009522: photosystem I2.03E-02
40GO:0032580: Golgi cisterna membrane2.57E-02
41GO:0046658: anchored component of plasma membrane3.16E-02
42GO:0005618: cell wall3.31E-02
43GO:0005886: plasma membrane3.39E-02
44GO:0009707: chloroplast outer membrane3.52E-02
<
Gene type



Gene DE type