co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G05850

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0045176: apical protein localization	0.00E+00
6	GO:0016553: base conversion or substitution editing	0.00E+00
7	GO:0032544: plastid translation	1.03E-07
8	GO:0010027: thylakoid membrane organization	1.99E-06
9	GO:0042335: cuticle development	1.14E-05
10	GO:0090391: granum assembly	1.22E-05
11	GO:0009773: photosynthetic electron transport in photosystem I	2.83E-05
12	GO:0006412: translation	3.66E-05
13	GO:0015995: chlorophyll biosynthetic process	6.04E-05
14	GO:0071555: cell wall organization	7.71E-05
15	GO:0042254: ribosome biogenesis	7.81E-05
16	GO:0015979: photosynthesis	1.71E-04
17	GO:0009409: response to cold	1.99E-04
18	GO:0010196: nonphotochemical quenching	2.07E-04
19	GO:0006869: lipid transport	2.34E-04
20	GO:0008610: lipid biosynthetic process	2.62E-04
21	GO:1904966: positive regulation of vitamin E biosynthetic process	2.72E-04
22	GO:1904964: positive regulation of phytol biosynthetic process	2.72E-04
23	GO:0042371: vitamin K biosynthetic process	2.72E-04
24	GO:0071588: hydrogen peroxide mediated signaling pathway	2.72E-04
25	GO:0060627: regulation of vesicle-mediated transport	2.72E-04
26	GO:0043489: RNA stabilization	2.72E-04
27	GO:0010541: acropetal auxin transport	5.99E-04
28	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.99E-04
29	GO:0010289: homogalacturonan biosynthetic process	5.99E-04
30	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.99E-04
31	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.99E-04
32	GO:0019253: reductive pentose-phosphate cycle	9.06E-04
33	GO:0010540: basipetal auxin transport	9.06E-04
34	GO:0080055: low-affinity nitrate transport	9.72E-04
35	GO:0009416: response to light stimulus	9.72E-04
36	GO:0006000: fructose metabolic process	9.72E-04
37	GO:0010160: formation of animal organ boundary	9.72E-04
38	GO:0006518: peptide metabolic process	9.72E-04
39	GO:0009637: response to blue light	9.85E-04
40	GO:0009825: multidimensional cell growth	1.01E-03
41	GO:0006833: water transport	1.12E-03
42	GO:0010025: wax biosynthetic process	1.12E-03
43	GO:0007017: microtubule-based process	1.37E-03
44	GO:1901332: negative regulation of lateral root development	1.39E-03
45	GO:2001141: regulation of RNA biosynthetic process	1.39E-03
46	GO:0051513: regulation of monopolar cell growth	1.39E-03
47	GO:0051639: actin filament network formation	1.39E-03
48	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.39E-03
49	GO:0051016: barbed-end actin filament capping	1.39E-03
50	GO:0009650: UV protection	1.39E-03
51	GO:0010088: phloem development	1.39E-03
52	GO:0030245: cellulose catabolic process	1.64E-03
53	GO:0042538: hyperosmotic salinity response	1.80E-03
54	GO:0051764: actin crosslink formation	1.86E-03
55	GO:0006183: GTP biosynthetic process	1.86E-03
56	GO:0045727: positive regulation of translation	1.86E-03
57	GO:0009306: protein secretion	1.94E-03
58	GO:0034220: ion transmembrane transport	2.27E-03
59	GO:0000413: protein peptidyl-prolyl isomerization	2.27E-03
60	GO:0009658: chloroplast organization	2.28E-03
61	GO:0010236: plastoquinone biosynthetic process	2.37E-03
62	GO:0006014: D-ribose metabolic process	2.93E-03
63	GO:0006751: glutathione catabolic process	2.93E-03
64	GO:0048827: phyllome development	2.93E-03
65	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.93E-03
66	GO:0009913: epidermal cell differentiation	2.93E-03
67	GO:0060918: auxin transport	2.93E-03
68	GO:0010190: cytochrome b6f complex assembly	2.93E-03
69	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.93E-03
70	GO:0009735: response to cytokinin	3.17E-03
71	GO:0006694: steroid biosynthetic process	3.52E-03
72	GO:0010019: chloroplast-nucleus signaling pathway	3.52E-03
73	GO:0009955: adaxial/abaxial pattern specification	3.52E-03
74	GO:0042372: phylloquinone biosynthetic process	3.52E-03
75	GO:1901259: chloroplast rRNA processing	3.52E-03
76	GO:0009395: phospholipid catabolic process	4.15E-03
77	GO:0009772: photosynthetic electron transport in photosystem II	4.15E-03
78	GO:0051693: actin filament capping	4.15E-03
79	GO:1900057: positive regulation of leaf senescence	4.15E-03
80	GO:0006605: protein targeting	4.82E-03
81	GO:0009808: lignin metabolic process	5.52E-03
82	GO:0006002: fructose 6-phosphate metabolic process	5.52E-03
83	GO:0071482: cellular response to light stimulus	5.52E-03
84	GO:0055085: transmembrane transport	5.63E-03
85	GO:0018298: protein-chromophore linkage	5.68E-03
86	GO:0000902: cell morphogenesis	6.25E-03
87	GO:0010218: response to far red light	6.27E-03
88	GO:0009631: cold acclimation	6.57E-03
89	GO:0042761: very long-chain fatty acid biosynthetic process	7.03E-03
90	GO:0016051: carbohydrate biosynthetic process	7.20E-03
91	GO:0034599: cellular response to oxidative stress	7.53E-03
92	GO:0010215: cellulose microfibril organization	7.82E-03
93	GO:0006810: transport	8.31E-03
94	GO:0006352: DNA-templated transcription, initiation	8.66E-03
95	GO:0000038: very long-chain fatty acid metabolic process	8.66E-03
96	GO:0043085: positive regulation of catalytic activity	8.66E-03
97	GO:0010114: response to red light	9.30E-03
98	GO:0008361: regulation of cell size	9.52E-03
99	GO:0016024: CDP-diacylglycerol biosynthetic process	9.52E-03
100	GO:0006006: glucose metabolic process	1.04E-02
101	GO:0010229: inflorescence development	1.04E-02
102	GO:0030036: actin cytoskeleton organization	1.04E-02
103	GO:0009718: anthocyanin-containing compound biosynthetic process	1.04E-02
104	GO:0006094: gluconeogenesis	1.04E-02
105	GO:0005986: sucrose biosynthetic process	1.04E-02
106	GO:0010102: lateral root morphogenesis	1.04E-02
107	GO:0006855: drug transmembrane transport	1.09E-02
108	GO:0007015: actin filament organization	1.13E-02
109	GO:0010143: cutin biosynthetic process	1.13E-02
110	GO:0005985: sucrose metabolic process	1.23E-02
111	GO:0009833: plant-type primary cell wall biogenesis	1.33E-02
112	GO:0080167: response to karrikin	1.42E-02
113	GO:0051017: actin filament bundle assembly	1.43E-02
114	GO:0000027: ribosomal large subunit assembly	1.43E-02
115	GO:0006096: glycolytic process	1.49E-02
116	GO:0009768: photosynthesis, light harvesting in photosystem I	1.53E-02
117	GO:0009695: jasmonic acid biosynthetic process	1.53E-02
118	GO:0016998: cell wall macromolecule catabolic process	1.64E-02
119	GO:0061077: chaperone-mediated protein folding	1.64E-02
120	GO:0031408: oxylipin biosynthetic process	1.64E-02
121	GO:0035428: hexose transmembrane transport	1.75E-02
122	GO:0045454: cell redox homeostasis	1.78E-02
123	GO:0009411: response to UV	1.86E-02
124	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.86E-02
125	GO:0048443: stamen development	1.97E-02
126	GO:0019722: calcium-mediated signaling	1.97E-02
127	GO:0080022: primary root development	2.21E-02
128	GO:0016042: lipid catabolic process	2.24E-02
129	GO:0006662: glycerol ether metabolic process	2.33E-02
130	GO:0046323: glucose import	2.33E-02
131	GO:0009958: positive gravitropism	2.33E-02
132	GO:0042744: hydrogen peroxide catabolic process	2.56E-02
133	GO:0019252: starch biosynthetic process	2.58E-02
134	GO:0048825: cotyledon development	2.58E-02
135	GO:0009790: embryo development	2.62E-02
136	GO:0016132: brassinosteroid biosynthetic process	2.71E-02
137	GO:0071554: cell wall organization or biogenesis	2.71E-02
138	GO:0000302: response to reactive oxygen species	2.71E-02
139	GO:0006633: fatty acid biosynthetic process	2.82E-02
140	GO:0010583: response to cyclopentenone	2.84E-02
141	GO:0009828: plant-type cell wall loosening	3.10E-02
142	GO:0045490: pectin catabolic process	3.10E-02
143	GO:0009639: response to red or far red light	3.10E-02
144	GO:0007267: cell-cell signaling	3.24E-02
145	GO:0009911: positive regulation of flower development	3.52E-02
146	GO:0009734: auxin-activated signaling pathway	3.55E-02
147	GO:0009627: systemic acquired resistance	3.80E-02
148	GO:0010411: xyloglucan metabolic process	3.95E-02
149	GO:0009817: defense response to fungus, incompatible interaction	4.25E-02
150	GO:0030244: cellulose biosynthetic process	4.25E-02
151	GO:0009832: plant-type cell wall biogenesis	4.40E-02
152	GO:0010311: lateral root formation	4.40E-02
153	GO:0009834: plant-type secondary cell wall biogenesis	4.55E-02
154	GO:0009407: toxin catabolic process	4.55E-02
155	GO:0009733: response to auxin	4.57E-02
156	GO:0009826: unidimensional cell growth	4.60E-02
157	GO:0048527: lateral root development	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
2	GO:0050614: delta24-sterol reductase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0019843: rRNA binding	1.78E-12
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.58E-08
10	GO:0005528: FK506 binding	2.91E-06
11	GO:0003735: structural constituent of ribosome	8.01E-06
12	GO:0008266: poly(U) RNA binding	5.34E-05
13	GO:0016788: hydrolase activity, acting on ester bonds	7.81E-05
14	GO:0051920: peroxiredoxin activity	1.58E-04
15	GO:0016209: antioxidant activity	2.62E-04
16	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.72E-04
17	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.72E-04
18	GO:0004321: fatty-acyl-CoA synthase activity	2.72E-04
19	GO:0016168: chlorophyll binding	5.62E-04
20	GO:0003839: gamma-glutamylcyclotransferase activity	5.99E-04
21	GO:0003938: IMP dehydrogenase activity	5.99E-04
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.99E-04
23	GO:0008805: carbon-monoxide oxygenase activity	5.99E-04
24	GO:0016630: protochlorophyllide reductase activity	5.99E-04
25	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.99E-04
26	GO:0008289: lipid binding	6.00E-04
27	GO:0052689: carboxylic ester hydrolase activity	8.16E-04
28	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.72E-04
29	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	9.72E-04
30	GO:0080054: low-affinity nitrate transmembrane transporter activity	9.72E-04
31	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	9.72E-04
32	GO:0016851: magnesium chelatase activity	1.39E-03
33	GO:0043023: ribosomal large subunit binding	1.39E-03
34	GO:0001872: (1->3)-beta-D-glucan binding	1.39E-03
35	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.69E-03
36	GO:0008810: cellulase activity	1.79E-03
37	GO:0004659: prenyltransferase activity	1.86E-03
38	GO:0001053: plastid sigma factor activity	1.86E-03
39	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.86E-03
40	GO:0016987: sigma factor activity	1.86E-03
41	GO:0052793: pectin acetylesterase activity	1.86E-03
42	GO:0043495: protein anchor	1.86E-03
43	GO:0003959: NADPH dehydrogenase activity	2.37E-03
44	GO:0004040: amidase activity	2.37E-03
45	GO:0016688: L-ascorbate peroxidase activity	2.93E-03
46	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.93E-03
47	GO:0004130: cytochrome-c peroxidase activity	2.93E-03
48	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.93E-03
49	GO:0051015: actin filament binding	3.43E-03
50	GO:0004747: ribokinase activity	3.52E-03
51	GO:0016759: cellulose synthase activity	3.65E-03
52	GO:0005200: structural constituent of cytoskeleton	3.88E-03
53	GO:0004620: phospholipase activity	4.15E-03
54	GO:0019899: enzyme binding	4.15E-03
55	GO:0015250: water channel activity	4.36E-03
56	GO:0004871: signal transducer activity	4.47E-03
57	GO:0008865: fructokinase activity	4.82E-03
58	GO:0052747: sinapyl alcohol dehydrogenase activity	4.82E-03
59	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.68E-03
60	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.02E-03
61	GO:0016207: 4-coumarate-CoA ligase activity	6.25E-03
62	GO:0047617: acyl-CoA hydrolase activity	7.03E-03
63	GO:0008047: enzyme activator activity	7.82E-03
64	GO:0045551: cinnamyl-alcohol dehydrogenase activity	9.52E-03
65	GO:0008081: phosphoric diester hydrolase activity	1.04E-02
66	GO:0004565: beta-galactosidase activity	1.04E-02
67	GO:0010329: auxin efflux transmembrane transporter activity	1.04E-02
68	GO:0004601: peroxidase activity	1.08E-02
69	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.33E-02
70	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.33E-02
71	GO:0031409: pigment binding	1.33E-02
72	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.33E-02
73	GO:0043424: protein histidine kinase binding	1.53E-02
74	GO:0004707: MAP kinase activity	1.64E-02
75	GO:0030599: pectinesterase activity	1.69E-02
76	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.75E-02
77	GO:0016746: transferase activity, transferring acyl groups	1.85E-02
78	GO:0016760: cellulose synthase (UDP-forming) activity	1.86E-02
79	GO:0022891: substrate-specific transmembrane transporter activity	1.86E-02
80	GO:0030570: pectate lyase activity	1.86E-02
81	GO:0047134: protein-disulfide reductase activity	2.09E-02
82	GO:0003924: GTPase activity	2.32E-02
83	GO:0004791: thioredoxin-disulfide reductase activity	2.45E-02
84	GO:0005355: glucose transmembrane transporter activity	2.45E-02
85	GO:0050662: coenzyme binding	2.45E-02
86	GO:0004252: serine-type endopeptidase activity	2.50E-02
87	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.71E-02
88	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.97E-02
89	GO:0016791: phosphatase activity	3.10E-02
90	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.24E-02
91	GO:0016413: O-acetyltransferase activity	3.38E-02
92	GO:0042802: identical protein binding	3.93E-02
93	GO:0030247: polysaccharide binding	3.95E-02
94	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.95E-02
95	GO:0008236: serine-type peptidase activity	4.10E-02
96	GO:0015238: drug transmembrane transporter activity	4.40E-02
97	GO:0005215: transporter activity	4.48E-02
98	GO:0004222: metalloendopeptidase activity	4.55E-02
99	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009930: longitudinal side of cell surface	0.00E+00
3	GO:0009507: chloroplast	4.02E-20
4	GO:0009535: chloroplast thylakoid membrane	3.61E-18
5	GO:0009570: chloroplast stroma	7.78E-16
6	GO:0009534: chloroplast thylakoid	1.58E-15
7	GO:0009941: chloroplast envelope	1.39E-14
8	GO:0009579: thylakoid	4.15E-13
9	GO:0009543: chloroplast thylakoid lumen	1.36E-09
10	GO:0048046: apoplast	2.68E-08
11	GO:0005840: ribosome	3.13E-07
12	GO:0046658: anchored component of plasma membrane	3.48E-07
13	GO:0031977: thylakoid lumen	5.37E-07
14	GO:0009505: plant-type cell wall	7.99E-07
15	GO:0016020: membrane	1.54E-06
16	GO:0005618: cell wall	1.80E-06
17	GO:0005886: plasma membrane	4.45E-06
18	GO:0031225: anchored component of membrane	1.64E-04
19	GO:0009533: chloroplast stromal thylakoid	2.07E-04
20	GO:0009547: plastid ribosome	2.72E-04
21	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.72E-04
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.90E-04
23	GO:0008290: F-actin capping protein complex	5.99E-04
24	GO:0005884: actin filament	6.22E-04
25	GO:0005576: extracellular region	6.78E-04
26	GO:0000311: plastid large ribosomal subunit	7.11E-04
27	GO:0016328: lateral plasma membrane	9.72E-04
28	GO:0010007: magnesium chelatase complex	9.72E-04
29	GO:0009897: external side of plasma membrane	9.72E-04
30	GO:0015630: microtubule cytoskeleton	1.39E-03
31	GO:0032432: actin filament bundle	1.39E-03
32	GO:0005802: trans-Golgi network	2.46E-03
33	GO:0009522: photosystem I	2.63E-03
34	GO:0005768: endosome	3.18E-03
35	GO:0016021: integral component of membrane	3.60E-03
36	GO:0010287: plastoglobule	3.83E-03
37	GO:0010319: stromule	3.88E-03
38	GO:0005763: mitochondrial small ribosomal subunit	6.25E-03
39	GO:0008180: COP9 signalosome	6.25E-03
40	GO:0045298: tubulin complex	6.25E-03
41	GO:0009506: plasmodesma	7.16E-03
42	GO:0030076: light-harvesting complex	1.23E-02
43	GO:0031969: chloroplast membrane	1.42E-02
44	GO:0042651: thylakoid membrane	1.53E-02
45	GO:0015935: small ribosomal subunit	1.64E-02
46	GO:0000139: Golgi membrane	2.13E-02
47	GO:0005770: late endosome	2.33E-02
48	GO:0009523: photosystem II	2.58E-02
49	GO:0030529: intracellular ribonucleoprotein complex	3.52E-02
50	GO:0019005: SCF ubiquitin ligase complex	4.25E-02