co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G05385

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
4	GO:0016553: base conversion or substitution editing	0.00E+00
5	GO:0032544: plastid translation	2.54E-08
6	GO:0015979: photosynthesis	2.27E-07
7	GO:0010207: photosystem II assembly	3.46E-07
8	GO:0035304: regulation of protein dephosphorylation	1.52E-06
9	GO:0090391: granum assembly	5.61E-06
10	GO:0010027: thylakoid membrane organization	1.30E-05
11	GO:0006412: translation	3.61E-05
12	GO:0042549: photosystem II stabilization	5.77E-05
13	GO:0042254: ribosome biogenesis	1.49E-04
14	GO:0010028: xanthophyll cycle	1.77E-04
15	GO:0034337: RNA folding	1.77E-04
16	GO:0000476: maturation of 4.5S rRNA	1.77E-04
17	GO:0000967: rRNA 5'-end processing	1.77E-04
18	GO:0009090: homoserine biosynthetic process	1.77E-04
19	GO:0043489: RNA stabilization	1.77E-04
20	GO:0010480: microsporocyte differentiation	1.77E-04
21	GO:0031338: regulation of vesicle fusion	1.77E-04
22	GO:0010206: photosystem II repair	2.09E-04
23	GO:0009735: response to cytokinin	2.27E-04
24	GO:0010205: photoinhibition	2.51E-04
25	GO:0015995: chlorophyll biosynthetic process	2.94E-04
26	GO:0019684: photosynthesis, light reaction	3.42E-04
27	GO:0034470: ncRNA processing	4.01E-04
28	GO:0010541: acropetal auxin transport	4.01E-04
29	GO:0018026: peptidyl-lysine monomethylation	4.01E-04
30	GO:0016122: xanthophyll metabolic process	4.01E-04
31	GO:1902448: positive regulation of shade avoidance	6.55E-04
32	GO:0010160: formation of animal organ boundary	6.55E-04
33	GO:0006518: peptide metabolic process	6.55E-04
34	GO:0080055: low-affinity nitrate transport	6.55E-04
35	GO:0051604: protein maturation	6.55E-04
36	GO:0045493: xylan catabolic process	6.55E-04
37	GO:0090630: activation of GTPase activity	6.55E-04
38	GO:0009664: plant-type cell wall organization	8.41E-04
39	GO:0006364: rRNA processing	9.17E-04
40	GO:0051513: regulation of monopolar cell growth	9.34E-04
41	GO:0043481: anthocyanin accumulation in tissues in response to UV light	9.34E-04
42	GO:0009052: pentose-phosphate shunt, non-oxidative branch	9.34E-04
43	GO:1901332: negative regulation of lateral root development	9.34E-04
44	GO:0009067: aspartate family amino acid biosynthetic process	9.34E-04
45	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.92E-04
46	GO:0045727: positive regulation of translation	1.24E-03
47	GO:0015994: chlorophyll metabolic process	1.24E-03
48	GO:0000470: maturation of LSU-rRNA	1.94E-03
49	GO:0006655: phosphatidylglycerol biosynthetic process	1.94E-03
50	GO:0060918: auxin transport	1.94E-03
51	GO:0009828: plant-type cell wall loosening	2.00E-03
52	GO:1901259: chloroplast rRNA processing	2.32E-03
53	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.32E-03
54	GO:0009088: threonine biosynthetic process	2.32E-03
55	GO:0048437: floral organ development	2.74E-03
56	GO:0010196: nonphotochemical quenching	2.74E-03
57	GO:0050829: defense response to Gram-negative bacterium	2.74E-03
58	GO:1900057: positive regulation of leaf senescence	2.74E-03
59	GO:0010411: xyloglucan metabolic process	2.80E-03
60	GO:0009451: RNA modification	2.92E-03
61	GO:0048564: photosystem I assembly	3.17E-03
62	GO:0006605: protein targeting	3.17E-03
63	GO:0010492: maintenance of shoot apical meristem identity	3.17E-03
64	GO:0048507: meristem development	4.10E-03
65	GO:0009638: phototropism	4.60E-03
66	GO:0009086: methionine biosynthetic process	4.60E-03
67	GO:0009658: chloroplast organization	4.93E-03
68	GO:0009773: photosynthetic electron transport in photosystem I	5.65E-03
69	GO:0009089: lysine biosynthetic process via diaminopimelate	5.65E-03
70	GO:1903507: negative regulation of nucleic acid-templated transcription	5.65E-03
71	GO:0018119: peptidyl-cysteine S-nitrosylation	5.65E-03
72	GO:0048229: gametophyte development	5.65E-03
73	GO:0008361: regulation of cell size	6.20E-03
74	GO:0016024: CDP-diacylglycerol biosynthetic process	6.20E-03
75	GO:0009785: blue light signaling pathway	6.78E-03
76	GO:0010075: regulation of meristem growth	6.78E-03
77	GO:0010540: basipetal auxin transport	7.37E-03
78	GO:0009934: regulation of meristem structural organization	7.37E-03
79	GO:0000027: ribosomal large subunit assembly	9.26E-03
80	GO:0016998: cell wall macromolecule catabolic process	1.06E-02
81	GO:0035428: hexose transmembrane transport	1.13E-02
82	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.13E-02
83	GO:0071369: cellular response to ethylene stimulus	1.20E-02
84	GO:0048443: stamen development	1.27E-02
85	GO:0009306: protein secretion	1.27E-02
86	GO:0009790: embryo development	1.42E-02
87	GO:0048653: anther development	1.43E-02
88	GO:0042335: cuticle development	1.43E-02
89	GO:0080022: primary root development	1.43E-02
90	GO:0009958: positive gravitropism	1.50E-02
91	GO:0046323: glucose import	1.50E-02
92	GO:0009734: auxin-activated signaling pathway	1.64E-02
93	GO:0007623: circadian rhythm	1.68E-02
94	GO:0000302: response to reactive oxygen species	1.75E-02
95	GO:0016032: viral process	1.83E-02
96	GO:1901657: glycosyl compound metabolic process	1.91E-02
97	GO:0030163: protein catabolic process	1.91E-02
98	GO:0009639: response to red or far red light	2.00E-02
99	GO:0009409: response to cold	2.45E-02
100	GO:0009826: unidimensional cell growth	2.50E-02
101	GO:0009817: defense response to fungus, incompatible interaction	2.74E-02
102	GO:0010311: lateral root formation	2.84E-02
103	GO:0010218: response to far red light	2.94E-02
104	GO:0009631: cold acclimation	3.04E-02
105	GO:0048527: lateral root development	3.04E-02
106	GO:0045087: innate immune response	3.24E-02
107	GO:0009637: response to blue light	3.24E-02
108	GO:0034599: cellular response to oxidative stress	3.35E-02
109	GO:0030001: metal ion transport	3.56E-02
110	GO:0006631: fatty acid metabolic process	3.67E-02
111	GO:0009640: photomorphogenesis	3.88E-02
112	GO:0009926: auxin polar transport	3.88E-02
113	GO:0042546: cell wall biogenesis	4.00E-02
114	GO:0006855: drug transmembrane transport	4.33E-02
115	GO:0031347: regulation of defense response	4.45E-02
116	GO:0032259: methylation	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0010242: oxygen evolving activity	0.00E+00
4	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
5	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
6	GO:0019843: rRNA binding	5.91E-14
7	GO:0008266: poly(U) RNA binding	3.46E-07
8	GO:0005528: FK506 binding	7.56E-07
9	GO:0003735: structural constituent of ribosome	2.67E-06
10	GO:0016851: magnesium chelatase activity	1.30E-05
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.90E-05
12	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.77E-04
13	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.77E-04
14	GO:0004412: homoserine dehydrogenase activity	4.01E-04
15	GO:0080054: low-affinity nitrate transmembrane transporter activity	6.55E-04
16	GO:0004751: ribose-5-phosphate isomerase activity	6.55E-04
17	GO:0004072: aspartate kinase activity	9.34E-04
18	GO:0019201: nucleotide kinase activity	9.34E-04
19	GO:0043023: ribosomal large subunit binding	9.34E-04
20	GO:0009011: starch synthase activity	1.24E-03
21	GO:0009044: xylan 1,4-beta-xylosidase activity	1.24E-03
22	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.24E-03
23	GO:0046556: alpha-L-arabinofuranosidase activity	1.24E-03
24	GO:0016279: protein-lysine N-methyltransferase activity	1.24E-03
25	GO:0017137: Rab GTPase binding	1.57E-03
26	GO:0004130: cytochrome-c peroxidase activity	1.94E-03
27	GO:0004017: adenylate kinase activity	2.32E-03
28	GO:0008236: serine-type peptidase activity	2.94E-03
29	GO:0043022: ribosome binding	3.17E-03
30	GO:0005096: GTPase activator activity	3.25E-03
31	GO:0005509: calcium ion binding	3.75E-03
32	GO:0005515: protein binding	5.33E-03
33	GO:0009982: pseudouridine synthase activity	6.78E-03
34	GO:0010329: auxin efflux transmembrane transporter activity	6.78E-03
35	GO:0031072: heat shock protein binding	6.78E-03
36	GO:0003729: mRNA binding	8.65E-03
37	GO:0003714: transcription corepressor activity	9.26E-03
38	GO:0003723: RNA binding	1.02E-02
39	GO:0033612: receptor serine/threonine kinase binding	1.06E-02
40	GO:0003756: protein disulfide isomerase activity	1.27E-02
41	GO:0005355: glucose transmembrane transporter activity	1.58E-02
42	GO:0050662: coenzyme binding	1.58E-02
43	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.75E-02
44	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.13E-02
45	GO:0016597: amino acid binding	2.18E-02
46	GO:0016168: chlorophyll binding	2.36E-02
47	GO:0102483: scopolin beta-glucosidase activity	2.55E-02
48	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.55E-02
49	GO:0016788: hydrolase activity, acting on ester bonds	2.65E-02
50	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.74E-02
51	GO:0004222: metalloendopeptidase activity	2.94E-02
52	GO:0003746: translation elongation factor activity	3.24E-02
53	GO:0008422: beta-glucosidase activity	3.45E-02
54	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.45E-02
55	GO:0050661: NADP binding	3.56E-02
56	GO:0005525: GTP binding	4.08E-02
57	GO:0005198: structural molecule activity	4.22E-02
58	GO:0016787: hydrolase activity	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009507: chloroplast	4.90E-46
3	GO:0009535: chloroplast thylakoid membrane	6.43E-31
4	GO:0009534: chloroplast thylakoid	6.82E-30
5	GO:0009570: chloroplast stroma	6.45E-29
6	GO:0009941: chloroplast envelope	1.12E-28
7	GO:0009579: thylakoid	9.83E-24
8	GO:0031977: thylakoid lumen	2.85E-18
9	GO:0009543: chloroplast thylakoid lumen	2.73E-17
10	GO:0005840: ribosome	1.05E-08
11	GO:0009654: photosystem II oxygen evolving complex	1.37E-08
12	GO:0010287: plastoglobule	5.85E-08
13	GO:0019898: extrinsic component of membrane	1.15E-07
14	GO:0030095: chloroplast photosystem II	3.46E-07
15	GO:0010007: magnesium chelatase complex	5.61E-06
16	GO:0009295: nucleoid	1.02E-05
17	GO:0009508: plastid chromosome	1.65E-05
18	GO:0055035: plastid thylakoid membrane	3.89E-05
19	GO:0009515: granal stacked thylakoid	1.77E-04
20	GO:0030093: chloroplast photosystem I	4.01E-04
21	GO:0009531: secondary cell wall	9.34E-04
22	GO:0009526: plastid envelope	1.24E-03
23	GO:0009522: photosystem I	1.44E-03
24	GO:0009533: chloroplast stromal thylakoid	2.74E-03
25	GO:0009538: photosystem I reaction center	3.17E-03
26	GO:0042644: chloroplast nucleoid	4.10E-03
27	GO:0008180: COP9 signalosome	4.10E-03
28	GO:0055028: cortical microtubule	5.11E-03
29	GO:0032040: small-subunit processome	6.20E-03
30	GO:0031969: chloroplast membrane	6.49E-03
31	GO:0000312: plastid small ribosomal subunit	7.37E-03
32	GO:0016020: membrane	8.96E-03
33	GO:0071944: cell periphery	1.91E-02
34	GO:0009536: plastid	2.12E-02
35	GO:0030529: intracellular ribonucleoprotein complex	2.27E-02
36	GO:0019005: SCF ubiquitin ligase complex	2.74E-02
37	GO:0015934: large ribosomal subunit	3.04E-02
38	GO:0016021: integral component of membrane	3.07E-02
39	GO:0022625: cytosolic large ribosomal subunit	3.38E-02
40	GO:0005618: cell wall	4.52E-02
41	GO:0000502: proteasome complex	4.80E-02