GO Enrichment Analysis of Co-expressed Genes with
AT1G04940
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043633: polyadenylation-dependent RNA catabolic process | 0.00E+00 |
| 2 | GO:0080056: petal vascular tissue pattern formation | 0.00E+00 |
| 3 | GO:2001253: regulation of histone H3-K36 trimethylation | 0.00E+00 |
| 4 | GO:0080057: sepal vascular tissue pattern formation | 0.00E+00 |
| 5 | GO:0000731: DNA synthesis involved in DNA repair | 0.00E+00 |
| 6 | GO:0002191: cap-dependent translational initiation | 0.00E+00 |
| 7 | GO:0070478: nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay | 0.00E+00 |
| 8 | GO:0009312: oligosaccharide biosynthetic process | 0.00E+00 |
| 9 | GO:0010793: regulation of mRNA export from nucleus | 0.00E+00 |
| 10 | GO:0000478: endonucleolytic cleavage involved in rRNA processing | 0.00E+00 |
| 11 | GO:0006364: rRNA processing | 3.73E-06 |
| 12 | GO:1902466: positive regulation of histone H3-K27 trimethylation | 5.18E-05 |
| 13 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 5.18E-05 |
| 14 | GO:0031338: regulation of vesicle fusion | 5.18E-05 |
| 15 | GO:0006446: regulation of translational initiation | 9.00E-05 |
| 16 | GO:0006024: glycosaminoglycan biosynthetic process | 1.27E-04 |
| 17 | GO:0060149: negative regulation of posttranscriptional gene silencing | 1.27E-04 |
| 18 | GO:0050684: regulation of mRNA processing | 1.27E-04 |
| 19 | GO:0007584: response to nutrient | 1.27E-04 |
| 20 | GO:0030010: establishment of cell polarity | 1.27E-04 |
| 21 | GO:0015012: heparan sulfate proteoglycan biosynthetic process | 1.27E-04 |
| 22 | GO:0090630: activation of GTPase activity | 2.17E-04 |
| 23 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 2.17E-04 |
| 24 | GO:0032784: regulation of DNA-templated transcription, elongation | 2.17E-04 |
| 25 | GO:0042780: tRNA 3'-end processing | 2.17E-04 |
| 26 | GO:0010107: potassium ion import | 4.24E-04 |
| 27 | GO:0009247: glycolipid biosynthetic process | 5.39E-04 |
| 28 | GO:0005513: detection of calcium ion | 5.39E-04 |
| 29 | GO:0001731: formation of translation preinitiation complex | 6.60E-04 |
| 30 | GO:0016070: RNA metabolic process | 6.60E-04 |
| 31 | GO:1900425: negative regulation of defense response to bacterium | 6.60E-04 |
| 32 | GO:0019509: L-methionine salvage from methylthioadenosine | 7.87E-04 |
| 33 | GO:0009423: chorismate biosynthetic process | 7.87E-04 |
| 34 | GO:0009612: response to mechanical stimulus | 7.87E-04 |
| 35 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 9.18E-04 |
| 36 | GO:0016559: peroxisome fission | 1.06E-03 |
| 37 | GO:0019375: galactolipid biosynthetic process | 1.06E-03 |
| 38 | GO:0010093: specification of floral organ identity | 1.20E-03 |
| 39 | GO:0009880: embryonic pattern specification | 1.20E-03 |
| 40 | GO:0006261: DNA-dependent DNA replication | 1.20E-03 |
| 41 | GO:0006486: protein glycosylation | 1.32E-03 |
| 42 | GO:0090333: regulation of stomatal closure | 1.35E-03 |
| 43 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.50E-03 |
| 44 | GO:0006913: nucleocytoplasmic transport | 1.84E-03 |
| 45 | GO:0009073: aromatic amino acid family biosynthetic process | 1.84E-03 |
| 46 | GO:0000266: mitochondrial fission | 2.01E-03 |
| 47 | GO:0010105: negative regulation of ethylene-activated signaling pathway | 2.01E-03 |
| 48 | GO:0006829: zinc II ion transport | 2.19E-03 |
| 49 | GO:0010588: cotyledon vascular tissue pattern formation | 2.19E-03 |
| 50 | GO:0042343: indole glucosinolate metabolic process | 2.56E-03 |
| 51 | GO:0080188: RNA-directed DNA methylation | 2.56E-03 |
| 52 | GO:0071732: cellular response to nitric oxide | 2.56E-03 |
| 53 | GO:0006413: translational initiation | 2.97E-03 |
| 54 | GO:0006825: copper ion transport | 3.16E-03 |
| 55 | GO:0098542: defense response to other organism | 3.37E-03 |
| 56 | GO:0061077: chaperone-mediated protein folding | 3.37E-03 |
| 57 | GO:0080092: regulation of pollen tube growth | 3.59E-03 |
| 58 | GO:0071369: cellular response to ethylene stimulus | 3.80E-03 |
| 59 | GO:0009561: megagametogenesis | 4.03E-03 |
| 60 | GO:0010118: stomatal movement | 4.49E-03 |
| 61 | GO:0010305: leaf vascular tissue pattern formation | 4.72E-03 |
| 62 | GO:0006623: protein targeting to vacuole | 5.21E-03 |
| 63 | GO:0010183: pollen tube guidance | 5.21E-03 |
| 64 | GO:0002229: defense response to oomycetes | 5.46E-03 |
| 65 | GO:0009723: response to ethylene | 5.67E-03 |
| 66 | GO:0007264: small GTPase mediated signal transduction | 5.71E-03 |
| 67 | GO:0071281: cellular response to iron ion | 5.97E-03 |
| 68 | GO:0019760: glucosinolate metabolic process | 6.23E-03 |
| 69 | GO:0016579: protein deubiquitination | 6.76E-03 |
| 70 | GO:0006886: intracellular protein transport | 7.50E-03 |
| 71 | GO:0006499: N-terminal protein myristoylation | 9.06E-03 |
| 72 | GO:0006397: mRNA processing | 9.36E-03 |
| 73 | GO:0048364: root development | 9.36E-03 |
| 74 | GO:0048527: lateral root development | 9.36E-03 |
| 75 | GO:0010119: regulation of stomatal movement | 9.36E-03 |
| 76 | GO:0006839: mitochondrial transport | 1.09E-02 |
| 77 | GO:0030001: metal ion transport | 1.09E-02 |
| 78 | GO:0009873: ethylene-activated signaling pathway | 1.16E-02 |
| 79 | GO:0006260: DNA replication | 1.37E-02 |
| 80 | GO:0009736: cytokinin-activated signaling pathway | 1.47E-02 |
| 81 | GO:0006417: regulation of translation | 1.58E-02 |
| 82 | GO:0048367: shoot system development | 1.70E-02 |
| 83 | GO:0009553: embryo sac development | 1.85E-02 |
| 84 | GO:0009742: brassinosteroid mediated signaling pathway | 1.97E-02 |
| 85 | GO:0009790: embryo development | 2.48E-02 |
| 86 | GO:0016036: cellular response to phosphate starvation | 2.66E-02 |
| 87 | GO:0009826: unidimensional cell growth | 3.71E-02 |
| 88 | GO:0042254: ribosome biogenesis | 3.86E-02 |
| 89 | GO:0009860: pollen tube growth | 4.02E-02 |
| 90 | GO:0007049: cell cycle | 4.12E-02 |
| 91 | GO:0048366: leaf development | 4.28E-02 |
| 92 | GO:0010200: response to chitin | 4.55E-02 |
| 93 | GO:0046777: protein autophosphorylation | 4.66E-02 |
| 94 | GO:0044550: secondary metabolite biosynthetic process | 4.71E-02 |
| 95 | GO:0006810: transport | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046522: S-methyl-5-thioribose kinase activity | 0.00E+00 |
| 2 | GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity | 0.00E+00 |
| 3 | GO:0098808: mRNA cap binding | 0.00E+00 |
| 4 | GO:0046481: digalactosyldiacylglycerol synthase activity | 5.18E-05 |
| 5 | GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters | 1.27E-04 |
| 6 | GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity | 1.27E-04 |
| 7 | GO:0019829: cation-transporting ATPase activity | 2.17E-04 |
| 8 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 2.17E-04 |
| 9 | GO:0035250: UDP-galactosyltransferase activity | 3.17E-04 |
| 10 | GO:0008375: acetylglucosaminyltransferase activity | 5.37E-04 |
| 11 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 5.39E-04 |
| 12 | GO:0017137: Rab GTPase binding | 5.39E-04 |
| 13 | GO:0005096: GTPase activator activity | 6.55E-04 |
| 14 | GO:0003724: RNA helicase activity | 1.20E-03 |
| 15 | GO:0005267: potassium channel activity | 1.20E-03 |
| 16 | GO:0005375: copper ion transmembrane transporter activity | 1.20E-03 |
| 17 | GO:0008417: fucosyltransferase activity | 1.35E-03 |
| 18 | GO:0008026: ATP-dependent helicase activity | 1.97E-03 |
| 19 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 2.19E-03 |
| 20 | GO:0016887: ATPase activity | 2.24E-03 |
| 21 | GO:0000166: nucleotide binding | 2.66E-03 |
| 22 | GO:0003887: DNA-directed DNA polymerase activity | 2.76E-03 |
| 23 | GO:0005528: FK506 binding | 2.96E-03 |
| 24 | GO:0008408: 3'-5' exonuclease activity | 3.37E-03 |
| 25 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 3.37E-03 |
| 26 | GO:0016779: nucleotidyltransferase activity | 3.59E-03 |
| 27 | GO:0003743: translation initiation factor activity | 3.71E-03 |
| 28 | GO:0047134: protein-disulfide reductase activity | 4.26E-03 |
| 29 | GO:0046873: metal ion transmembrane transporter activity | 4.72E-03 |
| 30 | GO:0004791: thioredoxin-disulfide reductase activity | 4.96E-03 |
| 31 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 5.46E-03 |
| 32 | GO:0016791: phosphatase activity | 6.23E-03 |
| 33 | GO:0016757: transferase activity, transferring glycosyl groups | 7.87E-03 |
| 34 | GO:0004721: phosphoprotein phosphatase activity | 7.88E-03 |
| 35 | GO:0004004: ATP-dependent RNA helicase activity | 7.88E-03 |
| 36 | GO:0005524: ATP binding | 8.37E-03 |
| 37 | GO:0030145: manganese ion binding | 9.36E-03 |
| 38 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.33E-02 |
| 39 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.47E-02 |
| 40 | GO:0030246: carbohydrate binding | 2.15E-02 |
| 41 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.26E-02 |
| 42 | GO:0019825: oxygen binding | 2.28E-02 |
| 43 | GO:0015144: carbohydrate transmembrane transporter activity | 2.52E-02 |
| 44 | GO:0005351: sugar:proton symporter activity | 2.75E-02 |
| 45 | GO:0005509: calcium ion binding | 2.99E-02 |
| 46 | GO:0008194: UDP-glycosyltransferase activity | 3.03E-02 |
| 47 | GO:0005506: iron ion binding | 3.18E-02 |
| 48 | GO:0042802: identical protein binding | 3.31E-02 |
| 49 | GO:0003824: catalytic activity | 3.55E-02 |
| 50 | GO:0050660: flavin adenine dinucleotide binding | 4.23E-02 |
| 51 | GO:0008233: peptidase activity | 4.39E-02 |
| 52 | GO:0004497: monooxygenase activity | 4.44E-02 |
| 53 | GO:0003729: mRNA binding | 4.79E-02 |
| 54 | GO:0004674: protein serine/threonine kinase activity | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0055087: Ski complex | 0.00E+00 |
| 2 | GO:0043625: delta DNA polymerase complex | 5.18E-05 |
| 3 | GO:0005794: Golgi apparatus | 9.94E-05 |
| 4 | GO:0000176: nuclear exosome (RNase complex) | 2.17E-04 |
| 5 | GO:0005730: nucleolus | 5.69E-04 |
| 6 | GO:0016282: eukaryotic 43S preinitiation complex | 6.60E-04 |
| 7 | GO:0033290: eukaryotic 48S preinitiation complex | 7.87E-04 |
| 8 | GO:0005802: trans-Golgi network | 8.71E-04 |
| 9 | GO:0031902: late endosome membrane | 9.22E-04 |
| 10 | GO:0005768: endosome | 1.05E-03 |
| 11 | GO:0016604: nuclear body | 1.50E-03 |
| 12 | GO:0030665: clathrin-coated vesicle membrane | 1.50E-03 |
| 13 | GO:0017119: Golgi transport complex | 1.67E-03 |
| 14 | GO:0031307: integral component of mitochondrial outer membrane | 2.01E-03 |
| 15 | GO:0016021: integral component of membrane | 2.42E-03 |
| 16 | GO:0005795: Golgi stack | 2.56E-03 |
| 17 | GO:0005741: mitochondrial outer membrane | 3.37E-03 |
| 18 | GO:0031965: nuclear membrane | 5.21E-03 |
| 19 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 5.38E-03 |
| 20 | GO:0005622: intracellular | 5.49E-03 |
| 21 | GO:0032580: Golgi cisterna membrane | 6.23E-03 |
| 22 | GO:0005778: peroxisomal membrane | 6.49E-03 |
| 23 | GO:0005783: endoplasmic reticulum | 6.77E-03 |
| 24 | GO:0005829: cytosol | 8.31E-03 |
| 25 | GO:0009707: chloroplast outer membrane | 8.46E-03 |
| 26 | GO:0005819: spindle | 1.06E-02 |
| 27 | GO:0031966: mitochondrial membrane | 1.40E-02 |
| 28 | GO:0005635: nuclear envelope | 1.55E-02 |
| 29 | GO:0016607: nuclear speck | 1.70E-02 |
| 30 | GO:0012505: endomembrane system | 1.85E-02 |
| 31 | GO:0005654: nucleoplasm | 2.18E-02 |
| 32 | GO:0009524: phragmoplast | 2.31E-02 |
| 33 | GO:0000139: Golgi membrane | 4.37E-02 |
| 34 | GO:0005789: endoplasmic reticulum membrane | 4.92E-02 |