Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G04820

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000013: regulation of arginine biosynthetic process via ornithine0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0042304: regulation of fatty acid biosynthetic process0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:0010394: homogalacturonan metabolic process0.00E+00
6GO:0071258: cellular response to gravity5.42E-08
7GO:0007017: microtubule-based process6.13E-07
8GO:0045489: pectin biosynthetic process1.81E-06
9GO:0006633: fatty acid biosynthetic process3.70E-06
10GO:0042026: protein refolding3.94E-06
11GO:0006458: 'de novo' protein folding3.94E-06
12GO:0045488: pectin metabolic process2.76E-05
13GO:0061077: chaperone-mediated protein folding6.61E-05
14GO:0007005: mitochondrion organization7.33E-05
15GO:0040007: growth8.11E-05
16GO:0045793: positive regulation of cell size1.23E-04
17GO:0015840: urea transport1.23E-04
18GO:0010583: response to cyclopentenone1.57E-04
19GO:0006241: CTP biosynthetic process1.83E-04
20GO:0080170: hydrogen peroxide transmembrane transport1.83E-04
21GO:0043481: anthocyanin accumulation in tissues in response to UV light1.83E-04
22GO:0006165: nucleoside diphosphate phosphorylation1.83E-04
23GO:0006228: UTP biosynthetic process1.83E-04
24GO:0006808: regulation of nitrogen utilization2.48E-04
25GO:0006085: acetyl-CoA biosynthetic process2.48E-04
26GO:0006183: GTP biosynthetic process2.48E-04
27GO:0044206: UMP salvage2.48E-04
28GO:0043097: pyrimidine nucleoside salvage3.18E-04
29GO:0006555: methionine metabolic process3.92E-04
30GO:0006206: pyrimidine nucleobase metabolic process3.92E-04
31GO:0009651: response to salt stress4.41E-04
32GO:0010555: response to mannitol4.69E-04
33GO:0009612: response to mechanical stimulus4.69E-04
34GO:0009645: response to low light intensity stimulus5.49E-04
35GO:0045995: regulation of embryonic development5.49E-04
36GO:0006955: immune response5.49E-04
37GO:0000105: histidine biosynthetic process6.32E-04
38GO:0007155: cell adhesion6.32E-04
39GO:0009642: response to light intensity6.32E-04
40GO:0010233: phloem transport7.18E-04
41GO:0048589: developmental growth8.07E-04
42GO:0035999: tetrahydrofolate interconversion8.99E-04
43GO:0009790: embryo development1.24E-03
44GO:0009718: anthocyanin-containing compound biosynthetic process1.29E-03
45GO:0006807: nitrogen compound metabolic process1.29E-03
46GO:0010020: chloroplast fission1.40E-03
47GO:0006833: water transport1.62E-03
48GO:0010025: wax biosynthetic process1.62E-03
49GO:0019344: cysteine biosynthetic process1.73E-03
50GO:0009116: nucleoside metabolic process1.73E-03
51GO:0007010: cytoskeleton organization1.73E-03
52GO:0016998: cell wall macromolecule catabolic process1.97E-03
53GO:0006730: one-carbon metabolic process2.09E-03
54GO:0009411: response to UV2.22E-03
55GO:0016117: carotenoid biosynthetic process2.48E-03
56GO:0000271: polysaccharide biosynthetic process2.61E-03
57GO:0034220: ion transmembrane transport2.61E-03
58GO:0000413: protein peptidyl-prolyl isomerization2.61E-03
59GO:0010051: xylem and phloem pattern formation2.61E-03
60GO:0000226: microtubule cytoskeleton organization2.61E-03
61GO:0010305: leaf vascular tissue pattern formation2.74E-03
62GO:0019252: starch biosynthetic process3.02E-03
63GO:0032502: developmental process3.31E-03
64GO:0009911: positive regulation of flower development4.06E-03
65GO:0015995: chlorophyll biosynthetic process4.54E-03
66GO:0010411: xyloglucan metabolic process4.54E-03
67GO:0048767: root hair elongation5.04E-03
68GO:0007568: aging5.38E-03
69GO:0009734: auxin-activated signaling pathway5.66E-03
70GO:0016051: carbohydrate biosynthetic process5.73E-03
71GO:0006631: fatty acid metabolic process6.45E-03
72GO:0009735: response to cytokinin6.51E-03
73GO:0042542: response to hydrogen peroxide6.64E-03
74GO:0009744: response to sucrose6.82E-03
75GO:0042546: cell wall biogenesis7.01E-03
76GO:0009585: red, far-red light phototransduction8.40E-03
77GO:0006457: protein folding9.22E-03
78GO:0009740: gibberellic acid mediated signaling pathway1.03E-02
79GO:0009742: brassinosteroid mediated signaling pathway1.12E-02
80GO:0071555: cell wall organization1.45E-02
81GO:0042742: defense response to bacterium1.45E-02
82GO:0016036: cellular response to phosphate starvation1.51E-02
83GO:0045490: pectin catabolic process1.58E-02
84GO:0009826: unidimensional cell growth2.10E-02
85GO:0009658: chloroplast organization2.16E-02
86GO:0042254: ribosome biogenesis2.19E-02
87GO:0046686: response to cadmium ion2.26E-02
88GO:0048366: leaf development2.42E-02
89GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.58E-02
90GO:0045454: cell redox homeostasis2.86E-02
91GO:0006629: lipid metabolic process3.32E-02
92GO:0009908: flower development4.65E-02
93GO:0009416: response to light stimulus4.99E-02
RankGO TermAdjusted P value
1GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
2GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
3GO:0010307: acetylglutamate kinase regulator activity0.00E+00
4GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
5GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
6GO:0005200: structural constituent of cytoskeleton3.10E-10
7GO:0044183: protein binding involved in protein folding2.22E-05
8GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.76E-05
9GO:0042834: peptidoglycan binding2.76E-05
10GO:0004312: fatty acid synthase activity7.01E-05
11GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.23E-04
12GO:0004550: nucleoside diphosphate kinase activity1.83E-04
13GO:0003878: ATP citrate synthase activity1.83E-04
14GO:0015204: urea transmembrane transporter activity2.48E-04
15GO:0004845: uracil phosphoribosyltransferase activity2.48E-04
16GO:0051920: peroxiredoxin activity4.69E-04
17GO:0102391: decanoate--CoA ligase activity4.69E-04
18GO:0004849: uridine kinase activity4.69E-04
19GO:0004467: long-chain fatty acid-CoA ligase activity5.49E-04
20GO:0016209: antioxidant activity6.32E-04
21GO:0051082: unfolded protein binding8.63E-04
22GO:0016829: lyase activity1.15E-03
23GO:0005525: GTP binding1.79E-03
24GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.09E-03
25GO:0030570: pectate lyase activity2.22E-03
26GO:0016762: xyloglucan:xyloglucosyl transferase activity3.16E-03
27GO:0016722: oxidoreductase activity, oxidizing metal ions3.75E-03
28GO:0003924: GTPase activity4.03E-03
29GO:0015250: water channel activity4.06E-03
30GO:0016798: hydrolase activity, acting on glycosyl bonds4.54E-03
31GO:0003746: translation elongation factor activity5.73E-03
32GO:0005524: ATP binding6.45E-03
33GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.59E-03
34GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups9.65E-03
35GO:0005507: copper ion binding1.01E-02
36GO:0016758: transferase activity, transferring hexosyl groups1.24E-02
37GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.51E-02
38GO:0000287: magnesium ion binding2.13E-02
39GO:0003729: mRNA binding2.16E-02
40GO:0004601: peroxidase activity2.16E-02
41GO:0016757: transferase activity, transferring glycosyl groups4.90E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0045298: tubulin complex1.36E-10
3GO:0009570: chloroplast stroma2.07E-09
4GO:0009941: chloroplast envelope7.03E-09
5GO:0005618: cell wall8.99E-07
6GO:0009507: chloroplast9.39E-06
7GO:0009579: thylakoid1.09E-05
8GO:0016020: membrane4.61E-05
9GO:0048046: apoplast8.12E-05
10GO:0009346: citrate lyase complex1.83E-04
11GO:0009506: plasmodesma3.13E-04
12GO:0009536: plastid4.90E-04
13GO:0042807: central vacuole5.49E-04
14GO:0000139: Golgi membrane5.70E-04
15GO:0000326: protein storage vacuole7.18E-04
16GO:0022626: cytosolic ribosome9.15E-04
17GO:0005829: cytosol9.16E-04
18GO:0005773: vacuole9.88E-04
19GO:0005875: microtubule associated complex1.62E-03
20GO:0005802: trans-Golgi network1.73E-03
21GO:0046658: anchored component of plasma membrane1.91E-03
22GO:0005768: endosome2.03E-03
23GO:0005774: vacuolar membrane2.33E-03
24GO:0005874: microtubule2.65E-03
25GO:0010319: stromule3.75E-03
26GO:0009535: chloroplast thylakoid membrane6.44E-03
27GO:0031977: thylakoid lumen6.45E-03
28GO:0005856: cytoskeleton7.40E-03
29GO:0005794: Golgi apparatus8.27E-03
30GO:0031225: anchored component of membrane1.11E-02
31GO:0005759: mitochondrial matrix1.48E-02
32GO:0009705: plant-type vacuole membrane1.58E-02
33GO:0009505: plant-type cell wall1.81E-02
34GO:0005730: nucleolus2.45E-02
35GO:0005887: integral component of plasma membrane4.13E-02
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Gene type



Gene DE type