GO Enrichment Analysis of Co-expressed Genes with
AT1G04750
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 2 | GO:0019428: allantoin biosynthetic process | 0.00E+00 |
| 3 | GO:0034976: response to endoplasmic reticulum stress | 1.01E-07 |
| 4 | GO:0006468: protein phosphorylation | 1.02E-07 |
| 5 | GO:0031349: positive regulation of defense response | 5.31E-07 |
| 6 | GO:0015031: protein transport | 8.86E-06 |
| 7 | GO:0060548: negative regulation of cell death | 9.05E-06 |
| 8 | GO:0010197: polar nucleus fusion | 3.12E-05 |
| 9 | GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response | 3.24E-05 |
| 10 | GO:0045454: cell redox homeostasis | 6.24E-05 |
| 11 | GO:0006457: protein folding | 8.03E-05 |
| 12 | GO:0019628: urate catabolic process | 1.00E-04 |
| 13 | GO:0043547: positive regulation of GTPase activity | 1.00E-04 |
| 14 | GO:0006422: aspartyl-tRNA aminoacylation | 1.00E-04 |
| 15 | GO:0043687: post-translational protein modification | 1.00E-04 |
| 16 | GO:0046244: salicylic acid catabolic process | 1.00E-04 |
| 17 | GO:0002143: tRNA wobble position uridine thiolation | 1.00E-04 |
| 18 | GO:0060862: negative regulation of floral organ abscission | 1.00E-04 |
| 19 | GO:0006144: purine nucleobase metabolic process | 1.00E-04 |
| 20 | GO:0009968: negative regulation of signal transduction | 1.00E-04 |
| 21 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 1.00E-04 |
| 22 | GO:0034975: protein folding in endoplasmic reticulum | 1.00E-04 |
| 23 | GO:0001560: regulation of cell growth by extracellular stimulus | 1.00E-04 |
| 24 | GO:0000077: DNA damage checkpoint | 1.00E-04 |
| 25 | GO:0040020: regulation of meiotic nuclear division | 2.36E-04 |
| 26 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.36E-04 |
| 27 | GO:0006996: organelle organization | 2.36E-04 |
| 28 | GO:0002221: pattern recognition receptor signaling pathway | 2.36E-04 |
| 29 | GO:0006487: protein N-linked glycosylation | 3.24E-04 |
| 30 | GO:1900140: regulation of seedling development | 3.92E-04 |
| 31 | GO:0006517: protein deglycosylation | 3.92E-04 |
| 32 | GO:0009306: protein secretion | 5.10E-04 |
| 33 | GO:0009553: embryo sac development | 5.18E-04 |
| 34 | GO:0006886: intracellular protein transport | 5.24E-04 |
| 35 | GO:0002239: response to oomycetes | 5.64E-04 |
| 36 | GO:0009855: determination of bilateral symmetry | 5.64E-04 |
| 37 | GO:0033014: tetrapyrrole biosynthetic process | 5.64E-04 |
| 38 | GO:0071323: cellular response to chitin | 5.64E-04 |
| 39 | GO:0051289: protein homotetramerization | 5.64E-04 |
| 40 | GO:0000187: activation of MAPK activity | 5.64E-04 |
| 41 | GO:0042273: ribosomal large subunit biogenesis | 7.50E-04 |
| 42 | GO:0000460: maturation of 5.8S rRNA | 7.50E-04 |
| 43 | GO:0080142: regulation of salicylic acid biosynthetic process | 7.50E-04 |
| 44 | GO:0000302: response to reactive oxygen species | 7.83E-04 |
| 45 | GO:0018279: protein N-linked glycosylation via asparagine | 9.47E-04 |
| 46 | GO:0031365: N-terminal protein amino acid modification | 9.47E-04 |
| 47 | GO:0042742: defense response to bacterium | 1.08E-03 |
| 48 | GO:0000470: maturation of LSU-rRNA | 1.16E-03 |
| 49 | GO:0000741: karyogamy | 1.16E-03 |
| 50 | GO:0060918: auxin transport | 1.16E-03 |
| 51 | GO:0047484: regulation of response to osmotic stress | 1.16E-03 |
| 52 | GO:0010942: positive regulation of cell death | 1.16E-03 |
| 53 | GO:0006777: Mo-molybdopterin cofactor biosynthetic process | 1.16E-03 |
| 54 | GO:0007166: cell surface receptor signaling pathway | 1.25E-03 |
| 55 | GO:0000911: cytokinesis by cell plate formation | 1.38E-03 |
| 56 | GO:0009612: response to mechanical stimulus | 1.38E-03 |
| 57 | GO:0006694: steroid biosynthetic process | 1.38E-03 |
| 58 | GO:0043090: amino acid import | 1.62E-03 |
| 59 | GO:0071446: cellular response to salicylic acid stimulus | 1.62E-03 |
| 60 | GO:0080186: developmental vegetative growth | 1.62E-03 |
| 61 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 1.87E-03 |
| 62 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 1.87E-03 |
| 63 | GO:0006491: N-glycan processing | 1.87E-03 |
| 64 | GO:2000031: regulation of salicylic acid mediated signaling pathway | 2.14E-03 |
| 65 | GO:0007338: single fertilization | 2.41E-03 |
| 66 | GO:0010332: response to gamma radiation | 2.41E-03 |
| 67 | GO:0006783: heme biosynthetic process | 2.41E-03 |
| 68 | GO:0016192: vesicle-mediated transport | 2.55E-03 |
| 69 | GO:0009651: response to salt stress | 2.61E-03 |
| 70 | GO:0010205: photoinhibition | 2.70E-03 |
| 71 | GO:0043067: regulation of programmed cell death | 2.70E-03 |
| 72 | GO:0000103: sulfate assimilation | 3.00E-03 |
| 73 | GO:0043069: negative regulation of programmed cell death | 3.00E-03 |
| 74 | GO:0015706: nitrate transport | 3.63E-03 |
| 75 | GO:0010075: regulation of meristem growth | 3.95E-03 |
| 76 | GO:0009620: response to fungus | 4.04E-03 |
| 77 | GO:0009934: regulation of meristem structural organization | 4.30E-03 |
| 78 | GO:0042343: indole glucosinolate metabolic process | 4.64E-03 |
| 79 | GO:0010167: response to nitrate | 4.64E-03 |
| 80 | GO:0070588: calcium ion transmembrane transport | 4.64E-03 |
| 81 | GO:0009742: brassinosteroid mediated signaling pathway | 4.68E-03 |
| 82 | GO:0000027: ribosomal large subunit assembly | 5.37E-03 |
| 83 | GO:0030150: protein import into mitochondrial matrix | 5.37E-03 |
| 84 | GO:0015992: proton transport | 6.14E-03 |
| 85 | GO:0098542: defense response to other organism | 6.14E-03 |
| 86 | GO:0009814: defense response, incompatible interaction | 6.54E-03 |
| 87 | GO:0030433: ubiquitin-dependent ERAD pathway | 6.54E-03 |
| 88 | GO:0031348: negative regulation of defense response | 6.54E-03 |
| 89 | GO:0019748: secondary metabolic process | 6.54E-03 |
| 90 | GO:0042127: regulation of cell proliferation | 7.35E-03 |
| 91 | GO:0009409: response to cold | 7.48E-03 |
| 92 | GO:0010150: leaf senescence | 7.61E-03 |
| 93 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 7.78E-03 |
| 94 | GO:0042147: retrograde transport, endosome to Golgi | 7.78E-03 |
| 95 | GO:0042391: regulation of membrane potential | 8.21E-03 |
| 96 | GO:0010051: xylem and phloem pattern formation | 8.21E-03 |
| 97 | GO:0009960: endosperm development | 8.65E-03 |
| 98 | GO:0006662: glycerol ether metabolic process | 8.65E-03 |
| 99 | GO:0010182: sugar mediated signaling pathway | 8.65E-03 |
| 100 | GO:0009617: response to bacterium | 9.09E-03 |
| 101 | GO:0061025: membrane fusion | 9.10E-03 |
| 102 | GO:0006623: protein targeting to vacuole | 9.56E-03 |
| 103 | GO:0010183: pollen tube guidance | 9.56E-03 |
| 104 | GO:0009749: response to glucose | 9.56E-03 |
| 105 | GO:0002229: defense response to oomycetes | 1.00E-02 |
| 106 | GO:0006891: intra-Golgi vesicle-mediated transport | 1.00E-02 |
| 107 | GO:0006464: cellular protein modification process | 1.15E-02 |
| 108 | GO:0009567: double fertilization forming a zygote and endosperm | 1.15E-02 |
| 109 | GO:0016126: sterol biosynthetic process | 1.30E-02 |
| 110 | GO:0042128: nitrate assimilation | 1.40E-02 |
| 111 | GO:0015995: chlorophyll biosynthetic process | 1.46E-02 |
| 112 | GO:0080167: response to karrikin | 1.47E-02 |
| 113 | GO:0009737: response to abscisic acid | 1.48E-02 |
| 114 | GO:0008219: cell death | 1.57E-02 |
| 115 | GO:0006499: N-terminal protein myristoylation | 1.68E-02 |
| 116 | GO:0009631: cold acclimation | 1.74E-02 |
| 117 | GO:0010043: response to zinc ion | 1.74E-02 |
| 118 | GO:0006865: amino acid transport | 1.80E-02 |
| 119 | GO:0045087: innate immune response | 1.86E-02 |
| 120 | GO:0034599: cellular response to oxidative stress | 1.91E-02 |
| 121 | GO:0009414: response to water deprivation | 1.93E-02 |
| 122 | GO:0032259: methylation | 2.08E-02 |
| 123 | GO:0051707: response to other organism | 2.22E-02 |
| 124 | GO:0009644: response to high light intensity | 2.35E-02 |
| 125 | GO:0008643: carbohydrate transport | 2.35E-02 |
| 126 | GO:0031347: regulation of defense response | 2.55E-02 |
| 127 | GO:0000165: MAPK cascade | 2.55E-02 |
| 128 | GO:0006364: rRNA processing | 2.75E-02 |
| 129 | GO:0009909: regulation of flower development | 2.95E-02 |
| 130 | GO:0048316: seed development | 3.17E-02 |
| 131 | GO:0046686: response to cadmium ion | 3.45E-02 |
| 132 | GO:0009624: response to nematode | 3.53E-02 |
| 133 | GO:0018105: peptidyl-serine phosphorylation | 3.61E-02 |
| 134 | GO:0035556: intracellular signal transduction | 4.05E-02 |
| 135 | GO:0009790: embryo development | 4.62E-02 |
| 136 | GO:0007165: signal transduction | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 2 | GO:0050220: prostaglandin-E synthase activity | 0.00E+00 |
| 3 | GO:0061605: molybdopterin-synthase adenylyltransferase activity | 0.00E+00 |
| 4 | GO:0000247: C-8 sterol isomerase activity | 0.00E+00 |
| 5 | GO:0047750: cholestenol delta-isomerase activity | 0.00E+00 |
| 6 | GO:0033971: hydroxyisourate hydrolase activity | 0.00E+00 |
| 7 | GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity | 0.00E+00 |
| 8 | GO:0061604: molybdopterin-synthase sulfurtransferase activity | 0.00E+00 |
| 9 | GO:0004576: oligosaccharyl transferase activity | 2.59E-08 |
| 10 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 5.95E-08 |
| 11 | GO:0003756: protein disulfide isomerase activity | 3.83E-07 |
| 12 | GO:0016301: kinase activity | 1.57E-06 |
| 13 | GO:0005524: ATP binding | 5.58E-06 |
| 14 | GO:0008320: protein transmembrane transporter activity | 4.38E-05 |
| 15 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 5.73E-05 |
| 16 | GO:0015085: calcium ion transmembrane transporter activity | 1.00E-04 |
| 17 | GO:0004815: aspartate-tRNA ligase activity | 1.00E-04 |
| 18 | GO:0004325: ferrochelatase activity | 1.00E-04 |
| 19 | GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity | 1.00E-04 |
| 20 | GO:0004672: protein kinase activity | 1.02E-04 |
| 21 | GO:0004674: protein serine/threonine kinase activity | 1.30E-04 |
| 22 | GO:0043021: ribonucleoprotein complex binding | 2.36E-04 |
| 23 | GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity | 3.92E-04 |
| 24 | GO:0004557: alpha-galactosidase activity | 3.92E-04 |
| 25 | GO:0052692: raffinose alpha-galactosidase activity | 3.92E-04 |
| 26 | GO:0008265: Mo-molybdopterin cofactor sulfurase activity | 3.92E-04 |
| 27 | GO:0033612: receptor serine/threonine kinase binding | 3.94E-04 |
| 28 | GO:0015035: protein disulfide oxidoreductase activity | 5.57E-04 |
| 29 | GO:0009678: hydrogen-translocating pyrophosphatase activity | 5.64E-04 |
| 30 | GO:0004792: thiosulfate sulfurtransferase activity | 5.64E-04 |
| 31 | GO:0004930: G-protein coupled receptor activity | 7.50E-04 |
| 32 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.87E-04 |
| 33 | GO:0008641: small protein activating enzyme activity | 9.47E-04 |
| 34 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 9.73E-04 |
| 35 | GO:0004656: procollagen-proline 4-dioxygenase activity | 1.38E-03 |
| 36 | GO:0008235: metalloexopeptidase activity | 1.62E-03 |
| 37 | GO:0004427: inorganic diphosphatase activity | 1.62E-03 |
| 38 | GO:0000166: nucleotide binding | 1.62E-03 |
| 39 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.81E-03 |
| 40 | GO:0004708: MAP kinase kinase activity | 1.87E-03 |
| 41 | GO:0015112: nitrate transmembrane transporter activity | 2.70E-03 |
| 42 | GO:0004713: protein tyrosine kinase activity | 3.00E-03 |
| 43 | GO:0005515: protein binding | 3.15E-03 |
| 44 | GO:0004177: aminopeptidase activity | 3.31E-03 |
| 45 | GO:0005388: calcium-transporting ATPase activity | 3.95E-03 |
| 46 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 3.95E-03 |
| 47 | GO:0051082: unfolded protein binding | 4.42E-03 |
| 48 | GO:0030553: cGMP binding | 4.64E-03 |
| 49 | GO:0008061: chitin binding | 4.64E-03 |
| 50 | GO:0030552: cAMP binding | 4.64E-03 |
| 51 | GO:0031418: L-ascorbic acid binding | 5.37E-03 |
| 52 | GO:0005216: ion channel activity | 5.75E-03 |
| 53 | GO:0004707: MAP kinase activity | 6.14E-03 |
| 54 | GO:0008565: protein transporter activity | 6.60E-03 |
| 55 | GO:0008514: organic anion transmembrane transporter activity | 7.35E-03 |
| 56 | GO:0047134: protein-disulfide reductase activity | 7.78E-03 |
| 57 | GO:0030551: cyclic nucleotide binding | 8.21E-03 |
| 58 | GO:0005249: voltage-gated potassium channel activity | 8.21E-03 |
| 59 | GO:0004791: thioredoxin-disulfide reductase activity | 9.10E-03 |
| 60 | GO:0008168: methyltransferase activity | 1.14E-02 |
| 61 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 1.20E-02 |
| 62 | GO:0051213: dioxygenase activity | 1.30E-02 |
| 63 | GO:0005516: calmodulin binding | 1.36E-02 |
| 64 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 1.40E-02 |
| 65 | GO:0004721: phosphoprotein phosphatase activity | 1.46E-02 |
| 66 | GO:0004683: calmodulin-dependent protein kinase activity | 1.46E-02 |
| 67 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.46E-02 |
| 68 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.57E-02 |
| 69 | GO:0005096: GTPase activator activity | 1.62E-02 |
| 70 | GO:0003746: translation elongation factor activity | 1.86E-02 |
| 71 | GO:0005484: SNAP receptor activity | 2.22E-02 |
| 72 | GO:0015293: symporter activity | 2.41E-02 |
| 73 | GO:0015171: amino acid transmembrane transporter activity | 2.95E-02 |
| 74 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.31E-02 |
| 75 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.31E-02 |
| 76 | GO:0016758: transferase activity, transferring hexosyl groups | 4.06E-02 |
| 77 | GO:0019843: rRNA binding | 4.14E-02 |
| 78 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.22E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000327: lytic vacuole within protein storage vacuole | 0.00E+00 |
| 2 | GO:0005783: endoplasmic reticulum | 2.77E-15 |
| 3 | GO:0005886: plasma membrane | 3.41E-11 |
| 4 | GO:0005788: endoplasmic reticulum lumen | 8.36E-10 |
| 5 | GO:0016021: integral component of membrane | 1.18E-08 |
| 6 | GO:0008250: oligosaccharyltransferase complex | 5.95E-08 |
| 7 | GO:0005774: vacuolar membrane | 6.31E-06 |
| 8 | GO:0031234: extrinsic component of cytoplasmic side of plasma membrane | 1.00E-04 |
| 9 | GO:0005789: endoplasmic reticulum membrane | 1.13E-04 |
| 10 | GO:0005794: Golgi apparatus | 1.88E-04 |
| 11 | GO:0070545: PeBoW complex | 2.36E-04 |
| 12 | GO:0030134: ER to Golgi transport vesicle | 2.36E-04 |
| 13 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.10E-04 |
| 14 | GO:0032580: Golgi cisterna membrane | 9.40E-04 |
| 15 | GO:0016020: membrane | 1.13E-03 |
| 16 | GO:0030904: retromer complex | 1.16E-03 |
| 17 | GO:0009505: plant-type cell wall | 1.60E-03 |
| 18 | GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane | 1.62E-03 |
| 19 | GO:0030687: preribosome, large subunit precursor | 1.62E-03 |
| 20 | GO:0031902: late endosome membrane | 2.14E-03 |
| 21 | GO:0000326: protein storage vacuole | 2.14E-03 |
| 22 | GO:0030665: clathrin-coated vesicle membrane | 2.70E-03 |
| 23 | GO:0017119: Golgi transport complex | 3.00E-03 |
| 24 | GO:0005802: trans-Golgi network | 3.31E-03 |
| 25 | GO:0005834: heterotrimeric G-protein complex | 3.91E-03 |
| 26 | GO:0005768: endosome | 4.03E-03 |
| 27 | GO:0005795: Golgi stack | 4.64E-03 |
| 28 | GO:0005887: integral component of plasma membrane | 5.78E-03 |
| 29 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 7.35E-03 |
| 30 | GO:0009504: cell plate | 9.56E-03 |
| 31 | GO:0019898: extrinsic component of membrane | 9.56E-03 |
| 32 | GO:0016592: mediator complex | 1.05E-02 |
| 33 | GO:0009707: chloroplast outer membrane | 1.57E-02 |
| 34 | GO:0005773: vacuole | 1.97E-02 |
| 35 | GO:0090406: pollen tube | 2.22E-02 |
| 36 | GO:0010008: endosome membrane | 3.17E-02 |
| 37 | GO:0009506: plasmodesma | 3.65E-02 |
| 38 | GO:0005829: cytosol | 3.65E-02 |
| 39 | GO:0005654: nucleoplasm | 4.06E-02 |
| 40 | GO:0005623: cell | 4.22E-02 |