GO Enrichment Analysis of Co-expressed Genes with
AT1G04640
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0035998: 7,8-dihydroneopterin 3'-triphosphate biosynthetic process | 0.00E+00 |
| 2 | GO:0015822: ornithine transport | 0.00E+00 |
| 3 | GO:0006006: glucose metabolic process | 1.14E-06 |
| 4 | GO:0019253: reductive pentose-phosphate cycle | 1.42E-06 |
| 5 | GO:0006546: glycine catabolic process | 3.37E-06 |
| 6 | GO:0019464: glycine decarboxylation via glycine cleavage system | 3.37E-06 |
| 7 | GO:0006438: valyl-tRNA aminoacylation | 5.64E-05 |
| 8 | GO:0010480: microsporocyte differentiation | 5.64E-05 |
| 9 | GO:0000066: mitochondrial ornithine transport | 5.64E-05 |
| 10 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 5.64E-05 |
| 11 | GO:0048229: gametophyte development | 6.52E-05 |
| 12 | GO:0009744: response to sucrose | 7.68E-05 |
| 13 | GO:0009767: photosynthetic electron transport chain | 8.84E-05 |
| 14 | GO:0019388: galactose catabolic process | 1.37E-04 |
| 15 | GO:0006729: tetrahydrobiopterin biosynthetic process | 1.37E-04 |
| 16 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.37E-04 |
| 17 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.37E-04 |
| 18 | GO:0080092: regulation of pollen tube growth | 1.99E-04 |
| 19 | GO:0006000: fructose metabolic process | 2.34E-04 |
| 20 | GO:0033014: tetrapyrrole biosynthetic process | 3.41E-04 |
| 21 | GO:0009590: detection of gravity | 3.41E-04 |
| 22 | GO:2001141: regulation of RNA biosynthetic process | 3.41E-04 |
| 23 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.41E-04 |
| 24 | GO:0019252: starch biosynthetic process | 3.49E-04 |
| 25 | GO:0006542: glutamine biosynthetic process | 4.56E-04 |
| 26 | GO:0019676: ammonia assimilation cycle | 4.56E-04 |
| 27 | GO:0009416: response to light stimulus | 5.05E-04 |
| 28 | GO:0006810: transport | 5.40E-04 |
| 29 | GO:0010236: plastoquinone biosynthetic process | 5.78E-04 |
| 30 | GO:0016123: xanthophyll biosynthetic process | 5.78E-04 |
| 31 | GO:0046686: response to cadmium ion | 6.00E-04 |
| 32 | GO:0016554: cytidine to uridine editing | 7.07E-04 |
| 33 | GO:0070814: hydrogen sulfide biosynthetic process | 7.07E-04 |
| 34 | GO:0017148: negative regulation of translation | 8.44E-04 |
| 35 | GO:0046654: tetrahydrofolate biosynthetic process | 8.44E-04 |
| 36 | GO:0048437: floral organ development | 9.85E-04 |
| 37 | GO:0006826: iron ion transport | 9.85E-04 |
| 38 | GO:0006880: intracellular sequestering of iron ion | 9.85E-04 |
| 39 | GO:0008610: lipid biosynthetic process | 1.13E-03 |
| 40 | GO:0005978: glycogen biosynthetic process | 1.13E-03 |
| 41 | GO:0052543: callose deposition in cell wall | 1.13E-03 |
| 42 | GO:0016559: peroxisome fission | 1.13E-03 |
| 43 | GO:0048193: Golgi vesicle transport | 1.29E-03 |
| 44 | GO:0010100: negative regulation of photomorphogenesis | 1.29E-03 |
| 45 | GO:0006002: fructose 6-phosphate metabolic process | 1.29E-03 |
| 46 | GO:0071482: cellular response to light stimulus | 1.29E-03 |
| 47 | GO:0022900: electron transport chain | 1.29E-03 |
| 48 | GO:0006075: (1->3)-beta-D-glucan biosynthetic process | 1.29E-03 |
| 49 | GO:0006783: heme biosynthetic process | 1.45E-03 |
| 50 | GO:1900865: chloroplast RNA modification | 1.62E-03 |
| 51 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.62E-03 |
| 52 | GO:0006096: glycolytic process | 1.73E-03 |
| 53 | GO:0051555: flavonol biosynthetic process | 1.79E-03 |
| 54 | GO:0009970: cellular response to sulfate starvation | 1.79E-03 |
| 55 | GO:0000103: sulfate assimilation | 1.79E-03 |
| 56 | GO:0019684: photosynthesis, light reaction | 1.97E-03 |
| 57 | GO:0006879: cellular iron ion homeostasis | 1.97E-03 |
| 58 | GO:0006352: DNA-templated transcription, initiation | 1.97E-03 |
| 59 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.97E-03 |
| 60 | GO:0010075: regulation of meristem growth | 2.36E-03 |
| 61 | GO:0006094: gluconeogenesis | 2.36E-03 |
| 62 | GO:0005986: sucrose biosynthetic process | 2.36E-03 |
| 63 | GO:0009934: regulation of meristem structural organization | 2.56E-03 |
| 64 | GO:0042343: indole glucosinolate metabolic process | 2.76E-03 |
| 65 | GO:0010039: response to iron ion | 2.76E-03 |
| 66 | GO:0007031: peroxisome organization | 2.76E-03 |
| 67 | GO:0006418: tRNA aminoacylation for protein translation | 3.40E-03 |
| 68 | GO:0098542: defense response to other organism | 3.63E-03 |
| 69 | GO:0006730: one-carbon metabolic process | 3.86E-03 |
| 70 | GO:0016117: carotenoid biosynthetic process | 4.58E-03 |
| 71 | GO:0048653: anther development | 4.83E-03 |
| 72 | GO:0008360: regulation of cell shape | 5.09E-03 |
| 73 | GO:0015986: ATP synthesis coupled proton transport | 5.35E-03 |
| 74 | GO:0007059: chromosome segregation | 5.35E-03 |
| 75 | GO:0055072: iron ion homeostasis | 5.61E-03 |
| 76 | GO:0000302: response to reactive oxygen species | 5.88E-03 |
| 77 | GO:0007264: small GTPase mediated signal transduction | 6.15E-03 |
| 78 | GO:0080167: response to karrikin | 6.77E-03 |
| 79 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 7.01E-03 |
| 80 | GO:0051607: defense response to virus | 7.29E-03 |
| 81 | GO:0009817: defense response to fungus, incompatible interaction | 9.13E-03 |
| 82 | GO:0009407: toxin catabolic process | 9.78E-03 |
| 83 | GO:0007568: aging | 1.01E-02 |
| 84 | GO:0016051: carbohydrate biosynthetic process | 1.08E-02 |
| 85 | GO:0009853: photorespiration | 1.08E-02 |
| 86 | GO:0008152: metabolic process | 1.10E-02 |
| 87 | GO:0009409: response to cold | 1.10E-02 |
| 88 | GO:0006839: mitochondrial transport | 1.18E-02 |
| 89 | GO:0005975: carbohydrate metabolic process | 1.27E-02 |
| 90 | GO:0009636: response to toxic substance | 1.40E-02 |
| 91 | GO:0055114: oxidation-reduction process | 1.59E-02 |
| 92 | GO:0009735: response to cytokinin | 1.63E-02 |
| 93 | GO:0009058: biosynthetic process | 2.49E-02 |
| 94 | GO:0071555: cell wall organization | 3.61E-02 |
| 95 | GO:0009860: pollen tube growth | 4.34E-02 |
| 96 | GO:0048366: leaf development | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity | 0.00E+00 |
| 2 | GO:0003934: GTP cyclohydrolase I activity | 0.00E+00 |
| 3 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 4 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 5 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 1.88E-07 |
| 6 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.75E-06 |
| 7 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.27E-05 |
| 8 | GO:0004325: ferrochelatase activity | 5.64E-05 |
| 9 | GO:0010313: phytochrome binding | 5.64E-05 |
| 10 | GO:0004832: valine-tRNA ligase activity | 5.64E-05 |
| 11 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 6.52E-05 |
| 12 | GO:0000064: L-ornithine transmembrane transporter activity | 1.37E-04 |
| 13 | GO:0004614: phosphoglucomutase activity | 1.37E-04 |
| 14 | GO:0010291: carotene beta-ring hydroxylase activity | 1.37E-04 |
| 15 | GO:0016868: intramolecular transferase activity, phosphotransferases | 1.37E-04 |
| 16 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 1.37E-04 |
| 17 | GO:0004047: aminomethyltransferase activity | 1.37E-04 |
| 18 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.37E-04 |
| 19 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.34E-04 |
| 20 | GO:0004781: sulfate adenylyltransferase (ATP) activity | 2.34E-04 |
| 21 | GO:0048027: mRNA 5'-UTR binding | 3.41E-04 |
| 22 | GO:0008199: ferric iron binding | 3.41E-04 |
| 23 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 3.41E-04 |
| 24 | GO:0001872: (1->3)-beta-D-glucan binding | 3.41E-04 |
| 25 | GO:0004322: ferroxidase activity | 3.41E-04 |
| 26 | GO:0016987: sigma factor activity | 4.56E-04 |
| 27 | GO:0001053: plastid sigma factor activity | 4.56E-04 |
| 28 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 4.56E-04 |
| 29 | GO:0004356: glutamate-ammonia ligase activity | 5.78E-04 |
| 30 | GO:0042578: phosphoric ester hydrolase activity | 7.07E-04 |
| 31 | GO:0080030: methyl indole-3-acetate esterase activity | 7.07E-04 |
| 32 | GO:0043295: glutathione binding | 9.85E-04 |
| 33 | GO:0003843: 1,3-beta-D-glucan synthase activity | 1.29E-03 |
| 34 | GO:0031072: heat shock protein binding | 2.36E-03 |
| 35 | GO:0005528: FK506 binding | 3.18E-03 |
| 36 | GO:0033612: receptor serine/threonine kinase binding | 3.63E-03 |
| 37 | GO:0008194: UDP-glycosyltransferase activity | 3.96E-03 |
| 38 | GO:0003756: protein disulfide isomerase activity | 4.34E-03 |
| 39 | GO:0004812: aminoacyl-tRNA ligase activity | 4.58E-03 |
| 40 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 5.09E-03 |
| 41 | GO:0048038: quinone binding | 5.88E-03 |
| 42 | GO:0004518: nuclease activity | 6.15E-03 |
| 43 | GO:0008483: transaminase activity | 7.00E-03 |
| 44 | GO:0016597: amino acid binding | 7.29E-03 |
| 45 | GO:0005506: iron ion binding | 7.30E-03 |
| 46 | GO:0030247: polysaccharide binding | 8.50E-03 |
| 47 | GO:0050897: cobalt ion binding | 1.01E-02 |
| 48 | GO:0050661: NADP binding | 1.18E-02 |
| 49 | GO:0004364: glutathione transferase activity | 1.25E-02 |
| 50 | GO:0043621: protein self-association | 1.36E-02 |
| 51 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.36E-02 |
| 52 | GO:0005198: structural molecule activity | 1.40E-02 |
| 53 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.44E-02 |
| 54 | GO:0051287: NAD binding | 1.48E-02 |
| 55 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.59E-02 |
| 56 | GO:0004650: polygalacturonase activity | 1.92E-02 |
| 57 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 1.92E-02 |
| 58 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 1.92E-02 |
| 59 | GO:0016787: hydrolase activity | 1.96E-02 |
| 60 | GO:0022857: transmembrane transporter activity | 1.96E-02 |
| 61 | GO:0051082: unfolded protein binding | 2.04E-02 |
| 62 | GO:0016758: transferase activity, transferring hexosyl groups | 2.35E-02 |
| 63 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.45E-02 |
| 64 | GO:0019825: oxygen binding | 2.54E-02 |
| 65 | GO:0016829: lyase activity | 2.54E-02 |
| 66 | GO:0005525: GTP binding | 2.93E-02 |
| 67 | GO:0005509: calcium ion binding | 3.33E-02 |
| 68 | GO:0016757: transferase activity, transferring glycosyl groups | 3.49E-02 |
| 69 | GO:0042802: identical protein binding | 3.58E-02 |
| 70 | GO:0000287: magnesium ion binding | 4.06E-02 |
| 71 | GO:0016788: hydrolase activity, acting on ester bonds | 4.17E-02 |
| 72 | GO:0050660: flavin adenine dinucleotide binding | 4.57E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.94E-17 |
| 3 | GO:0009570: chloroplast stroma | 2.06E-10 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.42E-09 |
| 5 | GO:0009941: chloroplast envelope | 6.37E-08 |
| 6 | GO:0010319: stromule | 3.42E-07 |
| 7 | GO:0005960: glycine cleavage complex | 1.75E-06 |
| 8 | GO:0031969: chloroplast membrane | 6.54E-06 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 1.59E-05 |
| 10 | GO:0030095: chloroplast photosystem II | 1.02E-04 |
| 11 | GO:0048046: apoplast | 1.38E-04 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 1.63E-04 |
| 13 | GO:0019898: extrinsic component of membrane | 3.49E-04 |
| 14 | GO:0055035: plastid thylakoid membrane | 5.78E-04 |
| 15 | GO:0009534: chloroplast thylakoid | 6.73E-04 |
| 16 | GO:0005779: integral component of peroxisomal membrane | 1.29E-03 |
| 17 | GO:0000148: 1,3-beta-D-glucan synthase complex | 1.29E-03 |
| 18 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.45E-03 |
| 19 | GO:0016324: apical plasma membrane | 1.79E-03 |
| 20 | GO:0005765: lysosomal membrane | 1.97E-03 |
| 21 | GO:0009508: plastid chromosome | 2.36E-03 |
| 22 | GO:0009579: thylakoid | 3.82E-03 |
| 23 | GO:0009295: nucleoid | 7.00E-03 |
| 24 | GO:0005778: peroxisomal membrane | 7.00E-03 |
| 25 | GO:0005819: spindle | 1.15E-02 |
| 26 | GO:0031902: late endosome membrane | 1.22E-02 |
| 27 | GO:0031977: thylakoid lumen | 1.22E-02 |
| 28 | GO:0022626: cytosolic ribosome | 1.70E-02 |
| 29 | GO:0005747: mitochondrial respiratory chain complex I | 1.83E-02 |
| 30 | GO:0005759: mitochondrial matrix | 2.82E-02 |
| 31 | GO:0046658: anchored component of plasma membrane | 3.69E-02 |
| 32 | GO:0016020: membrane | 4.88E-02 |