co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0090706: specification of plant organ position	0.00E+00
3	GO:0045014: negative regulation of transcription by glucose	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0034337: RNA folding	0.00E+00
7	GO:0009773: photosynthetic electron transport in photosystem I	9.12E-09
8	GO:0010207: photosystem II assembly	1.84E-06
9	GO:0015979: photosynthesis	4.01E-06
10	GO:0009735: response to cytokinin	7.27E-06
11	GO:0090391: granum assembly	1.46E-05
12	GO:0080170: hydrogen peroxide transmembrane transport	3.26E-05
13	GO:0016024: CDP-diacylglycerol biosynthetic process	4.41E-05
14	GO:0015995: chlorophyll biosynthetic process	7.81E-05
15	GO:0016120: carotene biosynthetic process	9.24E-05
16	GO:0006655: phosphatidylglycerol biosynthetic process	1.34E-04
17	GO:0010019: chloroplast-nucleus signaling pathway	1.83E-04
18	GO:0048443: stamen development	2.12E-04
19	GO:0010196: nonphotochemical quenching	2.39E-04
20	GO:0034220: ion transmembrane transport	2.64E-04
21	GO:0015936: coenzyme A metabolic process	2.99E-04
22	GO:0043489: RNA stabilization	2.99E-04
23	GO:1904966: positive regulation of vitamin E biosynthetic process	2.99E-04
24	GO:0010480: microsporocyte differentiation	2.99E-04
25	GO:0000481: maturation of 5S rRNA	2.99E-04
26	GO:1904964: positive regulation of phytol biosynthetic process	2.99E-04
27	GO:0043686: co-translational protein modification	2.99E-04
28	GO:0010450: inflorescence meristem growth	2.99E-04
29	GO:0071588: hydrogen peroxide mediated signaling pathway	2.99E-04
30	GO:0032544: plastid translation	3.71E-04
31	GO:0010206: photosystem II repair	4.46E-04
32	GO:0010205: photoinhibition	5.28E-04
33	GO:0055085: transmembrane transport	5.69E-04
34	GO:0010027: thylakoid membrane organization	6.23E-04
35	GO:0035304: regulation of protein dephosphorylation	6.55E-04
36	GO:0043255: regulation of carbohydrate biosynthetic process	6.55E-04
37	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.55E-04
38	GO:0010115: regulation of abscisic acid biosynthetic process	6.55E-04
39	GO:0010541: acropetal auxin transport	6.55E-04
40	GO:0010289: homogalacturonan biosynthetic process	6.55E-04
41	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.55E-04
42	GO:0043085: positive regulation of catalytic activity	7.11E-04
43	GO:0010152: pollen maturation	8.12E-04
44	GO:0009631: cold acclimation	1.04E-03
45	GO:1902448: positive regulation of shade avoidance	1.06E-03
46	GO:0006518: peptide metabolic process	1.06E-03
47	GO:0010160: formation of animal organ boundary	1.06E-03
48	GO:0045165: cell fate commitment	1.06E-03
49	GO:0006636: unsaturated fatty acid biosynthetic process	1.28E-03
50	GO:0006833: water transport	1.28E-03
51	GO:0051639: actin filament network formation	1.52E-03
52	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.52E-03
53	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.52E-03
54	GO:1901332: negative regulation of lateral root development	1.52E-03
55	GO:0071484: cellular response to light intensity	1.52E-03
56	GO:0031408: oxylipin biosynthetic process	1.72E-03
57	GO:0051764: actin crosslink formation	2.04E-03
58	GO:0009765: photosynthesis, light harvesting	2.04E-03
59	GO:0006109: regulation of carbohydrate metabolic process	2.04E-03
60	GO:0045727: positive regulation of translation	2.04E-03
61	GO:0030104: water homeostasis	2.04E-03
62	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	2.04E-03
63	GO:0071369: cellular response to ethylene stimulus	2.05E-03
64	GO:0010438: cellular response to sulfur starvation	2.61E-03
65	GO:0010158: abaxial cell fate specification	2.61E-03
66	GO:0080022: primary root development	2.61E-03
67	GO:0006564: L-serine biosynthetic process	2.61E-03
68	GO:0031365: N-terminal protein amino acid modification	2.61E-03
69	GO:1902183: regulation of shoot apical meristem development	2.61E-03
70	GO:0016554: cytidine to uridine editing	3.22E-03
71	GO:0060918: auxin transport	3.22E-03
72	GO:0007035: vacuolar acidification	3.22E-03
73	GO:0010337: regulation of salicylic acid metabolic process	3.22E-03
74	GO:0009759: indole glucosinolate biosynthetic process	3.22E-03
75	GO:0006561: proline biosynthetic process	3.22E-03
76	GO:0006751: glutathione catabolic process	3.22E-03
77	GO:0042549: photosystem II stabilization	3.22E-03
78	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.87E-03
79	GO:1901259: chloroplast rRNA processing	3.87E-03
80	GO:0009772: photosynthetic electron transport in photosystem II	4.57E-03
81	GO:0048437: floral organ development	4.57E-03
82	GO:0010444: guard mother cell differentiation	4.57E-03
83	GO:0015693: magnesium ion transport	4.57E-03
84	GO:0009395: phospholipid catabolic process	4.57E-03
85	GO:0048564: photosystem I assembly	5.30E-03
86	GO:0009642: response to light intensity	5.30E-03
87	GO:0006605: protein targeting	5.30E-03
88	GO:0032508: DNA duplex unwinding	5.30E-03
89	GO:0031540: regulation of anthocyanin biosynthetic process	5.30E-03
90	GO:0006869: lipid transport	5.92E-03
91	GO:0010093: specification of floral organ identity	6.08E-03
92	GO:0009733: response to auxin	6.46E-03
93	GO:0018298: protein-chromophore linkage	6.53E-03
94	GO:0010311: lateral root formation	6.86E-03
95	GO:0009051: pentose-phosphate shunt, oxidative branch	6.89E-03
96	GO:2000024: regulation of leaf development	6.89E-03
97	GO:0048589: developmental growth	6.89E-03
98	GO:0007623: circadian rhythm	7.38E-03
99	GO:1900865: chloroplast RNA modification	7.74E-03
100	GO:0055062: phosphate ion homeostasis	8.62E-03
101	GO:0006535: cysteine biosynthetic process from serine	8.62E-03
102	GO:0006032: chitin catabolic process	8.62E-03
103	GO:0009688: abscisic acid biosynthetic process	8.62E-03
104	GO:0034599: cellular response to oxidative stress	8.66E-03
105	GO:0019684: photosynthesis, light reaction	9.55E-03
106	GO:0009073: aromatic amino acid family biosynthetic process	9.55E-03
107	GO:1903507: negative regulation of nucleic acid-templated transcription	9.55E-03
108	GO:0009750: response to fructose	9.55E-03
109	GO:0048229: gametophyte development	9.55E-03
110	GO:0008361: regulation of cell size	1.05E-02
111	GO:0002213: defense response to insect	1.05E-02
112	GO:0006810: transport	1.09E-02
113	GO:0010588: cotyledon vascular tissue pattern formation	1.15E-02
114	GO:0010628: positive regulation of gene expression	1.15E-02
115	GO:0006006: glucose metabolic process	1.15E-02
116	GO:0010229: inflorescence development	1.15E-02
117	GO:0009718: anthocyanin-containing compound biosynthetic process	1.15E-02
118	GO:0010075: regulation of meristem growth	1.15E-02
119	GO:0048467: gynoecium development	1.25E-02
120	GO:0010143: cutin biosynthetic process	1.25E-02
121	GO:0009933: meristem structural organization	1.25E-02
122	GO:0006855: drug transmembrane transport	1.25E-02
123	GO:0010540: basipetal auxin transport	1.25E-02
124	GO:0009934: regulation of meristem structural organization	1.25E-02
125	GO:0009658: chloroplast organization	1.29E-02
126	GO:0009664: plant-type cell wall organization	1.35E-02
127	GO:0009825: multidimensional cell growth	1.36E-02
128	GO:0010167: response to nitrate	1.36E-02
129	GO:0071732: cellular response to nitric oxide	1.36E-02
130	GO:0010030: positive regulation of seed germination	1.36E-02
131	GO:0010053: root epidermal cell differentiation	1.36E-02
132	GO:0006364: rRNA processing	1.45E-02
133	GO:0000162: tryptophan biosynthetic process	1.47E-02
134	GO:0010025: wax biosynthetic process	1.47E-02
135	GO:0042023: DNA endoreduplication	1.47E-02
136	GO:0009944: polarity specification of adaxial/abaxial axis	1.58E-02
137	GO:0000027: ribosomal large subunit assembly	1.58E-02
138	GO:0051017: actin filament bundle assembly	1.58E-02
139	GO:0019344: cysteine biosynthetic process	1.58E-02
140	GO:0008299: isoprenoid biosynthetic process	1.69E-02
141	GO:0009695: jasmonic acid biosynthetic process	1.69E-02
142	GO:0016998: cell wall macromolecule catabolic process	1.81E-02
143	GO:0015992: proton transport	1.81E-02
144	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.93E-02
145	GO:0035428: hexose transmembrane transport	1.93E-02
146	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.05E-02
147	GO:0045893: positive regulation of transcription, DNA-templated	2.07E-02
148	GO:0042127: regulation of cell proliferation	2.18E-02
149	GO:0009306: protein secretion	2.18E-02
150	GO:0016117: carotenoid biosynthetic process	2.31E-02
151	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.31E-02
152	GO:0048653: anther development	2.44E-02
153	GO:0042631: cellular response to water deprivation	2.44E-02
154	GO:0042335: cuticle development	2.44E-02
155	GO:0000413: protein peptidyl-prolyl isomerization	2.44E-02
156	GO:0010087: phloem or xylem histogenesis	2.44E-02
157	GO:0009958: positive gravitropism	2.57E-02
158	GO:0010154: fruit development	2.57E-02
159	GO:0010305: leaf vascular tissue pattern formation	2.57E-02
160	GO:0006662: glycerol ether metabolic process	2.57E-02
161	GO:0010182: sugar mediated signaling pathway	2.57E-02
162	GO:0046323: glucose import	2.57E-02
163	GO:0032259: methylation	2.62E-02
164	GO:0015986: ATP synthesis coupled proton transport	2.71E-02
165	GO:0042744: hydrogen peroxide catabolic process	2.94E-02
166	GO:0071554: cell wall organization or biogenesis	2.99E-02
167	GO:0000302: response to reactive oxygen species	2.99E-02
168	GO:0008152: metabolic process	3.12E-02
169	GO:0005975: carbohydrate metabolic process	3.25E-02
170	GO:0071281: cellular response to iron ion	3.28E-02
171	GO:0009639: response to red or far red light	3.42E-02
172	GO:0010252: auxin homeostasis	3.42E-02
173	GO:0009828: plant-type cell wall loosening	3.42E-02
174	GO:0009567: double fertilization forming a zygote and endosperm	3.42E-02
175	GO:0009451: RNA modification	3.64E-02
176	GO:0016126: sterol biosynthetic process	3.88E-02
177	GO:0042128: nitrate assimilation	4.20E-02
178	GO:0009734: auxin-activated signaling pathway	4.22E-02
179	GO:0016311: dephosphorylation	4.52E-02
180	GO:0009817: defense response to fungus, incompatible interaction	4.69E-02
181	GO:0030244: cellulose biosynthetic process	4.69E-02
182	GO:0000160: phosphorelay signal transduction system	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0038198: auxin receptor activity	0.00E+00
5	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
6	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
7	GO:0045436: lycopene beta cyclase activity	0.00E+00
8	GO:0005528: FK506 binding	3.93E-06
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.84E-05
10	GO:0010011: auxin binding	5.85E-05
11	GO:0008266: poly(U) RNA binding	6.59E-05
12	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.34E-04
13	GO:0019899: enzyme binding	2.39E-04
14	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.99E-04
15	GO:0042282: hydroxymethylglutaryl-CoA reductase activity	2.99E-04
16	GO:0010242: oxygen evolving activity	2.99E-04
17	GO:0004321: fatty-acyl-CoA synthase activity	2.99E-04
18	GO:0042586: peptide deformylase activity	2.99E-04
19	GO:0050139: nicotinate-N-glucosyltransferase activity	2.99E-04
20	GO:0046906: tetrapyrrole binding	2.99E-04
21	GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity	2.99E-04
22	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.19E-04
23	GO:0015250: water channel activity	6.23E-04
24	GO:0004312: fatty acid synthase activity	6.55E-04
25	GO:0000822: inositol hexakisphosphate binding	6.55E-04
26	GO:0003839: gamma-glutamylcyclotransferase activity	6.55E-04
27	GO:0004617: phosphoglycerate dehydrogenase activity	6.55E-04
28	GO:0016168: chlorophyll binding	6.68E-04
29	GO:0019843: rRNA binding	8.92E-04
30	GO:0004565: beta-galactosidase activity	9.19E-04
31	GO:0004751: ribose-5-phosphate isomerase activity	1.06E-03
32	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.06E-03
33	GO:0003993: acid phosphatase activity	1.23E-03
34	GO:0016851: magnesium chelatase activity	1.52E-03
35	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.52E-03
36	GO:0043023: ribosomal large subunit binding	1.52E-03
37	GO:0001872: (1->3)-beta-D-glucan binding	1.52E-03
38	GO:0004045: aminoacyl-tRNA hydrolase activity	2.04E-03
39	GO:0043495: protein anchor	2.04E-03
40	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.04E-03
41	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.04E-03
42	GO:0022891: substrate-specific transmembrane transporter activity	2.05E-03
43	GO:0004130: cytochrome-c peroxidase activity	3.22E-03
44	GO:0042578: phosphoric ester hydrolase activity	3.22E-03
45	GO:0016688: L-ascorbate peroxidase activity	3.22E-03
46	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.22E-03
47	GO:0004124: cysteine synthase activity	3.87E-03
48	GO:0043022: ribosome binding	5.30E-03
49	GO:0030247: polysaccharide binding	5.89E-03
50	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.08E-03
51	GO:0016207: 4-coumarate-CoA ligase activity	6.89E-03
52	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.89E-03
53	GO:0008047: enzyme activator activity	8.62E-03
54	GO:0004568: chitinase activity	8.62E-03
55	GO:0050661: NADP binding	9.45E-03
56	GO:0046961: proton-transporting ATPase activity, rotational mechanism	9.55E-03
57	GO:0005515: protein binding	9.67E-03
58	GO:0003729: mRNA binding	1.12E-02
59	GO:0010329: auxin efflux transmembrane transporter activity	1.15E-02
60	GO:0004022: alcohol dehydrogenase (NAD) activity	1.15E-02
61	GO:0015095: magnesium ion transmembrane transporter activity	1.15E-02
62	GO:0031072: heat shock protein binding	1.15E-02
63	GO:0009982: pseudouridine synthase activity	1.15E-02
64	GO:0016788: hydrolase activity, acting on ester bonds	1.32E-02
65	GO:0004857: enzyme inhibitor activity	1.58E-02
66	GO:0003714: transcription corepressor activity	1.58E-02
67	GO:0043424: protein histidine kinase binding	1.69E-02
68	GO:0004707: MAP kinase activity	1.81E-02
69	GO:0004176: ATP-dependent peptidase activity	1.81E-02
70	GO:0033612: receptor serine/threonine kinase binding	1.81E-02
71	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.93E-02
72	GO:0030570: pectate lyase activity	2.05E-02
73	GO:0016746: transferase activity, transferring acyl groups	2.12E-02
74	GO:0003756: protein disulfide isomerase activity	2.18E-02
75	GO:0004871: signal transducer activity	2.25E-02
76	GO:0047134: protein-disulfide reductase activity	2.31E-02
77	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.57E-02
78	GO:0005355: glucose transmembrane transporter activity	2.71E-02
79	GO:0050662: coenzyme binding	2.71E-02
80	GO:0004791: thioredoxin-disulfide reductase activity	2.71E-02
81	GO:0016829: lyase activity	2.80E-02
82	GO:0000156: phosphorelay response regulator activity	3.28E-02
83	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.28E-02
84	GO:0051015: actin filament binding	3.28E-02
85	GO:0016791: phosphatase activity	3.42E-02
86	GO:0016413: O-acetyltransferase activity	3.73E-02
87	GO:0016597: amino acid binding	3.73E-02
88	GO:0008289: lipid binding	4.15E-02
89	GO:0005509: calcium ion binding	4.22E-02
90	GO:0008236: serine-type peptidase activity	4.52E-02
91	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.69E-02
92	GO:0015238: drug transmembrane transporter activity	4.85E-02
93	GO:0005096: GTPase activator activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0009507: chloroplast	1.07E-35
4	GO:0009535: chloroplast thylakoid membrane	3.31E-23
5	GO:0009534: chloroplast thylakoid	8.32E-23
6	GO:0009579: thylakoid	3.73E-20
7	GO:0009570: chloroplast stroma	5.82E-17
8	GO:0009543: chloroplast thylakoid lumen	3.77E-15
9	GO:0009941: chloroplast envelope	5.75E-13
10	GO:0031977: thylakoid lumen	2.81E-11
11	GO:0031969: chloroplast membrane	2.46E-06
12	GO:0009654: photosystem II oxygen evolving complex	4.92E-06
13	GO:0019898: extrinsic component of membrane	2.40E-05
14	GO:0030095: chloroplast photosystem II	6.59E-05
15	GO:0010287: plastoglobule	1.26E-04
16	GO:0043674: columella	2.99E-04
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.46E-04
18	GO:0030093: chloroplast photosystem I	6.55E-04
19	GO:0032040: small-subunit processome	8.12E-04
20	GO:0010007: magnesium chelatase complex	1.06E-03
21	GO:0009509: chromoplast	1.06E-03
22	GO:0032432: actin filament bundle	1.52E-03
23	GO:0009531: secondary cell wall	1.52E-03
24	GO:0016021: integral component of membrane	1.62E-03
25	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	2.61E-03
26	GO:0009522: photosystem I	3.02E-03
27	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.22E-03
28	GO:0009523: photosystem II	3.24E-03
29	GO:0009533: chloroplast stromal thylakoid	4.57E-03
30	GO:0042807: central vacuole	4.57E-03
31	GO:0030529: intracellular ribonucleoprotein complex	5.00E-03
32	GO:0016020: membrane	6.66E-03
33	GO:0055028: cortical microtubule	8.62E-03
34	GO:0005884: actin filament	9.55E-03
35	GO:0046658: anchored component of plasma membrane	1.06E-02
36	GO:0009508: plastid chromosome	1.15E-02
37	GO:0000312: plastid small ribosomal subunit	1.25E-02
38	GO:0042651: thylakoid membrane	1.69E-02
39	GO:0005840: ribosome	1.75E-02
40	GO:0009536: plastid	2.28E-02
41	GO:0005773: vacuole	2.41E-02
42	GO:0048046: apoplast	2.52E-02
43	GO:0031225: anchored component of membrane	3.25E-02
44	GO:0009295: nucleoid	3.58E-02
45	GO:0010319: stromule	3.58E-02
46	GO:0005887: integral component of plasma membrane	4.03E-02
47	GO:0005886: plasma membrane	4.37E-02
48	GO:0000151: ubiquitin ligase complex	4.69E-02
49	GO:0019005: SCF ubiquitin ligase complex	4.69E-02