Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G03900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046109: uridine biosynthetic process0.00E+00
2GO:0080053: response to phenylalanine0.00E+00
3GO:0010360: negative regulation of anion channel activity0.00E+00
4GO:1901017: negative regulation of potassium ion transmembrane transporter activity0.00E+00
5GO:0080052: response to histidine0.00E+00
6GO:0006983: ER overload response0.00E+00
7GO:0007141: male meiosis I0.00E+00
8GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
9GO:0048227: plasma membrane to endosome transport0.00E+00
10GO:0072722: response to amitrole0.00E+00
11GO:0006990: positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response0.00E+00
12GO:0043201: response to leucine0.00E+00
13GO:0043069: negative regulation of programmed cell death1.46E-07
14GO:0015031: protein transport6.55E-06
15GO:0080142: regulation of salicylic acid biosynthetic process3.05E-05
16GO:0030433: ubiquitin-dependent ERAD pathway7.44E-05
17GO:1990022: RNA polymerase III complex localization to nucleus2.04E-04
18GO:0044376: RNA polymerase II complex import to nucleus2.04E-04
19GO:1902361: mitochondrial pyruvate transmembrane transport2.04E-04
20GO:0010265: SCF complex assembly2.04E-04
21GO:0051245: negative regulation of cellular defense response2.04E-04
22GO:0019567: arabinose biosynthetic process2.04E-04
23GO:0006422: aspartyl-tRNA aminoacylation2.04E-04
24GO:0006481: C-terminal protein methylation2.04E-04
25GO:0043562: cellular response to nitrogen levels2.11E-04
26GO:0009821: alkaloid biosynthetic process2.57E-04
27GO:0051865: protein autoubiquitination2.57E-04
28GO:0009615: response to virus3.07E-04
29GO:0006212: uracil catabolic process4.57E-04
30GO:0019374: galactolipid metabolic process4.57E-04
31GO:0043066: negative regulation of apoptotic process4.57E-04
32GO:0019483: beta-alanine biosynthetic process4.57E-04
33GO:0006850: mitochondrial pyruvate transport4.57E-04
34GO:0042939: tripeptide transport4.57E-04
35GO:0042325: regulation of phosphorylation4.57E-04
36GO:0019441: tryptophan catabolic process to kynurenine4.57E-04
37GO:0006996: organelle organization4.57E-04
38GO:0002221: pattern recognition receptor signaling pathway4.57E-04
39GO:0015914: phospholipid transport4.57E-04
40GO:0009727: detection of ethylene stimulus4.57E-04
41GO:0010150: leaf senescence6.30E-04
42GO:0009225: nucleotide-sugar metabolic process6.82E-04
43GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening7.44E-04
44GO:0010359: regulation of anion channel activity7.44E-04
45GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway7.44E-04
46GO:0002230: positive regulation of defense response to virus by host7.44E-04
47GO:0009410: response to xenobiotic stimulus7.44E-04
48GO:0010272: response to silver ion7.44E-04
49GO:2000034: regulation of seed maturation7.44E-04
50GO:1900055: regulation of leaf senescence7.44E-04
51GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process7.47E-04
52GO:0007166: cell surface receptor signaling pathway7.72E-04
53GO:0009617: response to bacterium8.23E-04
54GO:0009863: salicylic acid mediated signaling pathway8.38E-04
55GO:0006468: protein phosphorylation9.72E-04
56GO:0006612: protein targeting to membrane1.06E-03
57GO:0071323: cellular response to chitin1.06E-03
58GO:1902290: positive regulation of defense response to oomycetes1.06E-03
59GO:0006986: response to unfolded protein1.06E-03
60GO:0001676: long-chain fatty acid metabolic process1.06E-03
61GO:0048194: Golgi vesicle budding1.06E-03
62GO:0034219: carbohydrate transmembrane transport1.06E-03
63GO:0009052: pentose-phosphate shunt, non-oxidative branch1.06E-03
64GO:0033014: tetrapyrrole biosynthetic process1.06E-03
65GO:0009814: defense response, incompatible interaction1.10E-03
66GO:0006012: galactose metabolic process1.20E-03
67GO:0042938: dipeptide transport1.41E-03
68GO:0045227: capsule polysaccharide biosynthetic process1.41E-03
69GO:0033320: UDP-D-xylose biosynthetic process1.41E-03
70GO:0033358: UDP-L-arabinose biosynthetic process1.41E-03
71GO:0010363: regulation of plant-type hypersensitive response1.41E-03
72GO:0009620: response to fungus1.62E-03
73GO:0061025: membrane fusion1.75E-03
74GO:0010200: response to chitin1.77E-03
75GO:0030041: actin filament polymerization1.80E-03
76GO:0006461: protein complex assembly1.80E-03
77GO:0018344: protein geranylgeranylation1.80E-03
78GO:0009697: salicylic acid biosynthetic process1.80E-03
79GO:0007264: small GTPase mediated signal transduction2.14E-03
80GO:1902456: regulation of stomatal opening2.21E-03
81GO:1900425: negative regulation of defense response to bacterium2.21E-03
82GO:0018258: protein O-linked glycosylation via hydroxyproline2.21E-03
83GO:0002238: response to molecule of fungal origin2.21E-03
84GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.21E-03
85GO:0010405: arabinogalactan protein metabolic process2.21E-03
86GO:0048232: male gamete generation2.21E-03
87GO:0042732: D-xylose metabolic process2.21E-03
88GO:0006886: intracellular protein transport2.32E-03
89GO:0000911: cytokinesis by cell plate formation2.66E-03
90GO:0009612: response to mechanical stimulus2.66E-03
91GO:0098655: cation transmembrane transport2.66E-03
92GO:0010555: response to mannitol2.66E-03
93GO:2000067: regulation of root morphogenesis2.66E-03
94GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.66E-03
95GO:0009816: defense response to bacterium, incompatible interaction3.05E-03
96GO:0070370: cellular heat acclimation3.13E-03
97GO:0000338: protein deneddylation3.13E-03
98GO:1900057: positive regulation of leaf senescence3.13E-03
99GO:0050790: regulation of catalytic activity3.13E-03
100GO:0043090: amino acid import3.13E-03
101GO:1900056: negative regulation of leaf senescence3.13E-03
102GO:0009753: response to jasmonic acid3.38E-03
103GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.63E-03
104GO:0043068: positive regulation of programmed cell death3.63E-03
105GO:1900150: regulation of defense response to fungus3.63E-03
106GO:2000070: regulation of response to water deprivation3.63E-03
107GO:0006644: phospholipid metabolic process3.63E-03
108GO:0007186: G-protein coupled receptor signaling pathway4.15E-03
109GO:0030968: endoplasmic reticulum unfolded protein response4.15E-03
110GO:0006972: hyperosmotic response4.15E-03
111GO:0006783: heme biosynthetic process4.70E-03
112GO:0010112: regulation of systemic acquired resistance4.70E-03
113GO:0009867: jasmonic acid mediated signaling pathway4.76E-03
114GO:0048354: mucilage biosynthetic process involved in seed coat development5.27E-03
115GO:1900426: positive regulation of defense response to bacterium5.27E-03
116GO:0006631: fatty acid metabolic process5.66E-03
117GO:0006896: Golgi to vacuole transport5.86E-03
118GO:0051026: chiasma assembly5.86E-03
119GO:0006032: chitin catabolic process5.86E-03
120GO:0042742: defense response to bacterium6.13E-03
121GO:0051707: response to other organism6.13E-03
122GO:0015770: sucrose transport6.48E-03
123GO:0000272: polysaccharide catabolic process6.48E-03
124GO:0009750: response to fructose6.48E-03
125GO:0030148: sphingolipid biosynthetic process6.48E-03
126GO:0000038: very long-chain fatty acid metabolic process6.48E-03
127GO:0009738: abscisic acid-activated signaling pathway6.91E-03
128GO:0015706: nitrate transport7.12E-03
129GO:0006890: retrograde vesicle-mediated transport, Golgi to ER7.12E-03
130GO:0000266: mitochondrial fission7.12E-03
131GO:0006790: sulfur compound metabolic process7.12E-03
132GO:0012501: programmed cell death7.12E-03
133GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process7.43E-03
134GO:0009737: response to abscisic acid7.58E-03
135GO:0042538: hyperosmotic salinity response7.70E-03
136GO:0002237: response to molecule of bacterial origin8.47E-03
137GO:0034605: cellular response to heat8.47E-03
138GO:0046777: protein autophosphorylation9.10E-03
139GO:0010167: response to nitrate9.17E-03
140GO:0005985: sucrose metabolic process9.17E-03
141GO:0010030: positive regulation of seed germination9.17E-03
142GO:0046854: phosphatidylinositol phosphorylation9.17E-03
143GO:0034976: response to endoplasmic reticulum stress9.90E-03
144GO:0000027: ribosomal large subunit assembly1.06E-02
145GO:0030150: protein import into mitochondrial matrix1.06E-02
146GO:2000377: regulation of reactive oxygen species metabolic process1.06E-02
147GO:0006874: cellular calcium ion homeostasis1.14E-02
148GO:0016575: histone deacetylation1.14E-02
149GO:0048278: vesicle docking1.22E-02
150GO:0018105: peptidyl-serine phosphorylation1.22E-02
151GO:0016998: cell wall macromolecule catabolic process1.22E-02
152GO:0015992: proton transport1.22E-02
153GO:0007131: reciprocal meiotic recombination1.30E-02
154GO:0080092: regulation of pollen tube growth1.30E-02
155GO:0071456: cellular response to hypoxia1.30E-02
156GO:0046686: response to cadmium ion1.32E-02
157GO:0016042: lipid catabolic process1.32E-02
158GO:0009751: response to salicylic acid1.35E-02
159GO:0071369: cellular response to ethylene stimulus1.38E-02
160GO:0009306: protein secretion1.47E-02
161GO:0042147: retrograde transport, endosome to Golgi1.55E-02
162GO:0009058: biosynthetic process1.56E-02
163GO:0010087: phloem or xylem histogenesis1.64E-02
164GO:0010305: leaf vascular tissue pattern formation1.73E-02
165GO:0042752: regulation of circadian rhythm1.82E-02
166GO:0009646: response to absence of light1.82E-02
167GO:0006952: defense response1.89E-02
168GO:0010183: pollen tube guidance1.92E-02
169GO:0009749: response to glucose1.92E-02
170GO:0006623: protein targeting to vacuole1.92E-02
171GO:0071554: cell wall organization or biogenesis2.01E-02
172GO:0000302: response to reactive oxygen species2.01E-02
173GO:0006891: intra-Golgi vesicle-mediated transport2.01E-02
174GO:0010193: response to ozone2.01E-02
175GO:0006310: DNA recombination2.30E-02
176GO:0006470: protein dephosphorylation2.34E-02
177GO:0009607: response to biotic stimulus2.72E-02
178GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.72E-02
179GO:0006906: vesicle fusion2.83E-02
180GO:0009627: systemic acquired resistance2.83E-02
181GO:0042128: nitrate assimilation2.83E-02
182GO:0009611: response to wounding2.90E-02
183GO:0015995: chlorophyll biosynthetic process2.94E-02
184GO:0035556: intracellular signal transduction3.02E-02
185GO:0016311: dephosphorylation3.05E-02
186GO:0030244: cellulose biosynthetic process3.16E-02
187GO:0008219: cell death3.16E-02
188GO:0009832: plant-type cell wall biogenesis3.27E-02
189GO:0007568: aging3.50E-02
190GO:0010119: regulation of stomatal movement3.50E-02
191GO:0006865: amino acid transport3.62E-02
192GO:0009723: response to ethylene3.66E-02
193GO:0045087: innate immune response3.74E-02
194GO:0080167: response to karrikin3.92E-02
195GO:0016192: vesicle-mediated transport4.12E-02
196GO:0006887: exocytosis4.22E-02
197GO:0044550: secondary metabolite biosynthetic process4.26E-02
198GO:0009640: photomorphogenesis4.47E-02
199GO:0009744: response to sucrose4.47E-02
200GO:0000209: protein polyubiquitination4.60E-02
201GO:0009636: response to toxic substance4.86E-02
RankGO TermAdjusted P value
1GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
2GO:0005092: GDP-dissociation inhibitor activity0.00E+00
3GO:0004157: dihydropyrimidinase activity0.00E+00
4GO:0051670: inulinase activity0.00E+00
5GO:0005093: Rab GDP-dissociation inhibitor activity7.24E-06
6GO:0102391: decanoate--CoA ligase activity1.00E-04
7GO:0003978: UDP-glucose 4-epimerase activity1.00E-04
8GO:0004467: long-chain fatty acid-CoA ligase activity1.33E-04
9GO:0051669: fructan beta-fructosidase activity2.04E-04
10GO:0019707: protein-cysteine S-acyltransferase activity2.04E-04
11GO:0004325: ferrochelatase activity2.04E-04
12GO:0031219: levanase activity2.04E-04
13GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity2.04E-04
14GO:0004815: aspartate-tRNA ligase activity2.04E-04
15GO:0016844: strictosidine synthase activity3.06E-04
16GO:0061630: ubiquitin protein ligase activity3.54E-04
17GO:0045140: inositol phosphoceramide synthase activity4.57E-04
18GO:0004061: arylformamidase activity4.57E-04
19GO:0043141: ATP-dependent 5'-3' DNA helicase activity4.57E-04
20GO:0042937: tripeptide transporter activity4.57E-04
21GO:0050736: O-malonyltransferase activity4.57E-04
22GO:0018708: thiol S-methyltransferase activity4.57E-04
23GO:0008061: chitin binding6.82E-04
24GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity7.44E-04
25GO:0050833: pyruvate transmembrane transporter activity7.44E-04
26GO:0004751: ribose-5-phosphate isomerase activity7.44E-04
27GO:0031683: G-protein beta/gamma-subunit complex binding7.44E-04
28GO:0016805: dipeptidase activity7.44E-04
29GO:0001664: G-protein coupled receptor binding7.44E-04
30GO:0008430: selenium binding7.44E-04
31GO:0050373: UDP-arabinose 4-epimerase activity1.41E-03
32GO:0042936: dipeptide transporter activity1.41E-03
33GO:0016301: kinase activity1.75E-03
34GO:0017137: Rab GTPase binding1.80E-03
35GO:0005496: steroid binding1.80E-03
36GO:0005524: ATP binding1.99E-03
37GO:0004674: protein serine/threonine kinase activity2.04E-03
38GO:0047714: galactolipase activity2.21E-03
39GO:0036402: proteasome-activating ATPase activity2.21E-03
40GO:0048040: UDP-glucuronate decarboxylase activity2.21E-03
41GO:1990714: hydroxyproline O-galactosyltransferase activity2.21E-03
42GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.66E-03
43GO:0004012: phospholipid-translocating ATPase activity2.66E-03
44GO:0004656: procollagen-proline 4-dioxygenase activity2.66E-03
45GO:0070403: NAD+ binding2.66E-03
46GO:0003924: GTPase activity3.04E-03
47GO:0008320: protein transmembrane transporter activity3.13E-03
48GO:0004620: phospholipase activity3.13E-03
49GO:0008506: sucrose:proton symporter activity3.13E-03
50GO:0008235: metalloexopeptidase activity3.13E-03
51GO:0009931: calcium-dependent protein serine/threonine kinase activity3.22E-03
52GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.33E-03
53GO:0004806: triglyceride lipase activity3.40E-03
54GO:0004683: calmodulin-dependent protein kinase activity3.40E-03
55GO:0052747: sinapyl alcohol dehydrogenase activity3.63E-03
56GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.76E-03
57GO:0005515: protein binding3.78E-03
58GO:0005096: GTPase activator activity3.95E-03
59GO:0008970: phosphatidylcholine 1-acylhydrolase activity4.15E-03
60GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.15E-03
61GO:0003678: DNA helicase activity4.70E-03
62GO:0047617: acyl-CoA hydrolase activity5.27E-03
63GO:0030955: potassium ion binding5.27E-03
64GO:0015112: nitrate transmembrane transporter activity5.27E-03
65GO:0004743: pyruvate kinase activity5.27E-03
66GO:0004568: chitinase activity5.86E-03
67GO:0005484: SNAP receptor activity6.13E-03
68GO:0004177: aminopeptidase activity6.48E-03
69GO:0045551: cinnamyl-alcohol dehydrogenase activity7.12E-03
70GO:0008378: galactosyltransferase activity7.12E-03
71GO:0015266: protein channel activity7.78E-03
72GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism7.78E-03
73GO:0019888: protein phosphatase regulator activity7.78E-03
74GO:0000175: 3'-5'-exoribonuclease activity7.78E-03
75GO:0004535: poly(A)-specific ribonuclease activity8.47E-03
76GO:0008234: cysteine-type peptidase activity9.16E-03
77GO:0031625: ubiquitin protein ligase binding9.16E-03
78GO:0004970: ionotropic glutamate receptor activity9.17E-03
79GO:0005217: intracellular ligand-gated ion channel activity9.17E-03
80GO:0004190: aspartic-type endopeptidase activity9.17E-03
81GO:0017025: TBP-class protein binding9.17E-03
82GO:0016491: oxidoreductase activity9.90E-03
83GO:0031418: L-ascorbic acid binding1.06E-02
84GO:0003954: NADH dehydrogenase activity1.06E-02
85GO:0004407: histone deacetylase activity1.06E-02
86GO:0004842: ubiquitin-protein transferase activity1.08E-02
87GO:0004540: ribonuclease activity1.22E-02
88GO:0019706: protein-cysteine S-palmitoyltransferase activity1.22E-02
89GO:0008408: 3'-5' exonuclease activity1.22E-02
90GO:0005516: calmodulin binding1.35E-02
91GO:0047134: protein-disulfide reductase activity1.55E-02
92GO:0001085: RNA polymerase II transcription factor binding1.73E-02
93GO:0010181: FMN binding1.82E-02
94GO:0004791: thioredoxin-disulfide reductase activity1.82E-02
95GO:0004197: cysteine-type endopeptidase activity2.11E-02
96GO:0016413: O-acetyltransferase activity2.51E-02
97GO:0008168: methyltransferase activity3.05E-02
98GO:0000287: magnesium ion binding3.11E-02
99GO:0030145: manganese ion binding3.50E-02
100GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.50E-02
101GO:0003697: single-stranded DNA binding3.74E-02
102GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.74E-02
103GO:0043565: sequence-specific DNA binding3.98E-02
104GO:0000149: SNARE binding3.98E-02
105GO:0004712: protein serine/threonine/tyrosine kinase activity3.98E-02
106GO:0004364: glutathione transferase activity4.35E-02
107GO:0015293: symporter activity4.86E-02
108GO:0042803: protein homodimerization activity4.90E-02
109GO:0004871: signal transducer activity4.90E-02
RankGO TermAdjusted P value
1GO:0005794: Golgi apparatus3.29E-06
2GO:0005783: endoplasmic reticulum3.99E-06
3GO:0016021: integral component of membrane4.47E-06
4GO:0016020: membrane1.29E-05
5GO:0005886: plasma membrane1.54E-05
6GO:0031305: integral component of mitochondrial inner membrane1.70E-04
7GO:0005911: cell-cell junction2.04E-04
8GO:0030014: CCR4-NOT complex2.04E-04
9GO:0000138: Golgi trans cisterna2.04E-04
10GO:0031304: intrinsic component of mitochondrial inner membrane4.57E-04
11GO:0005829: cytosol8.63E-04
12GO:0030658: transport vesicle membrane1.06E-03
13GO:0031461: cullin-RING ubiquitin ligase complex1.06E-03
14GO:0005968: Rab-protein geranylgeranyltransferase complex1.06E-03
15GO:0005789: endoplasmic reticulum membrane1.18E-03
16GO:0000164: protein phosphatase type 1 complex1.80E-03
17GO:0032580: Golgi cisterna membrane2.43E-03
18GO:0031597: cytosolic proteasome complex2.66E-03
19GO:0000139: Golgi membrane3.11E-03
20GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane3.13E-03
21GO:0000794: condensed nuclear chromosome3.13E-03
22GO:0031595: nuclear proteasome complex3.13E-03
23GO:0005802: trans-Golgi network4.07E-03
24GO:0008180: COP9 signalosome4.70E-03
25GO:0008540: proteasome regulatory particle, base subcomplex5.27E-03
26GO:0031902: late endosome membrane5.66E-03
27GO:0017119: Golgi transport complex5.86E-03
28GO:0048471: perinuclear region of cytoplasm6.48E-03
29GO:0005773: vacuole6.66E-03
30GO:0005764: lysosome8.47E-03
31GO:0005635: nuclear envelope8.86E-03
32GO:0005769: early endosome9.90E-03
33GO:0012505: endomembrane system1.14E-02
34GO:0005744: mitochondrial inner membrane presequence translocase complex1.47E-02
35GO:0000790: nuclear chromatin1.55E-02
36GO:0030136: clathrin-coated vesicle1.55E-02
37GO:0009524: phragmoplast1.56E-02
38GO:0009504: cell plate1.92E-02
39GO:0019898: extrinsic component of membrane1.92E-02
40GO:0005667: transcription factor complex2.83E-02
41GO:0000151: ubiquitin ligase complex3.16E-02
42GO:0009707: chloroplast outer membrane3.16E-02
43GO:0005737: cytoplasm3.31E-02
44GO:0005874: microtubule3.79E-02
45GO:0005819: spindle3.98E-02
46GO:0031201: SNARE complex4.22E-02
47GO:0005730: nucleolus4.53E-02
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Gene type



Gene DE type