Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G03870

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080127: fruit septum development0.00E+00
2GO:0031508: pericentric heterochromatin assembly0.00E+00
3GO:1901485: positive regulation of transcription factor catabolic process0.00E+00
4GO:0045010: actin nucleation2.51E-05
5GO:0010411: xyloglucan metabolic process3.40E-05
6GO:0071370: cellular response to gibberellin stimulus5.94E-05
7GO:0042547: cell wall modification involved in multidimensional cell growth5.94E-05
8GO:0019354: siroheme biosynthetic process5.94E-05
9GO:0000038: very long-chain fatty acid metabolic process7.05E-05
10GO:0042546: cell wall biogenesis9.03E-05
11GO:0010424: DNA methylation on cytosine within a CG sequence1.44E-04
12GO:0090309: positive regulation of methylation-dependent chromatin silencing1.44E-04
13GO:0032776: DNA methylation on cytosine2.46E-04
14GO:0000271: polysaccharide biosynthetic process3.00E-04
15GO:1902476: chloride transmembrane transport3.57E-04
16GO:0032456: endocytic recycling3.57E-04
17GO:0051016: barbed-end actin filament capping3.57E-04
18GO:2000762: regulation of phenylpropanoid metabolic process6.05E-04
19GO:1900425: negative regulation of defense response to bacterium7.40E-04
20GO:0003006: developmental process involved in reproduction7.40E-04
21GO:0009554: megasporogenesis8.82E-04
22GO:0051510: regulation of unidimensional cell growth1.03E-03
23GO:0006821: chloride transport1.03E-03
24GO:0048507: meristem development1.52E-03
25GO:0051865: protein autoubiquitination1.52E-03
26GO:0071555: cell wall organization1.62E-03
27GO:0009638: phototropism1.69E-03
28GO:0006779: porphyrin-containing compound biosynthetic process1.69E-03
29GO:0043069: negative regulation of programmed cell death1.88E-03
30GO:0006325: chromatin organization1.88E-03
31GO:0010216: maintenance of DNA methylation2.07E-03
32GO:0016024: CDP-diacylglycerol biosynthetic process2.27E-03
33GO:0010582: floral meristem determinacy2.27E-03
34GO:0015706: nitrate transport2.27E-03
35GO:0009742: brassinosteroid mediated signaling pathway2.35E-03
36GO:0030036: actin cytoskeleton organization2.47E-03
37GO:0018107: peptidyl-threonine phosphorylation2.47E-03
38GO:0048467: gynoecium development2.68E-03
39GO:0010143: cutin biosynthetic process2.68E-03
40GO:0009969: xyloglucan biosynthetic process2.89E-03
41GO:0010167: response to nitrate2.89E-03
42GO:0005985: sucrose metabolic process2.89E-03
43GO:0006833: water transport3.11E-03
44GO:0009738: abscisic acid-activated signaling pathway3.20E-03
45GO:0006468: protein phosphorylation3.31E-03
46GO:0005992: trehalose biosynthetic process3.34E-03
47GO:0006633: fatty acid biosynthetic process3.46E-03
48GO:0010017: red or far-red light signaling pathway4.05E-03
49GO:0009814: defense response, incompatible interaction4.05E-03
50GO:0019722: calcium-mediated signaling4.55E-03
51GO:0080022: primary root development5.07E-03
52GO:0034220: ion transmembrane transport5.07E-03
53GO:0010087: phloem or xylem histogenesis5.07E-03
54GO:0042335: cuticle development5.07E-03
55GO:0009741: response to brassinosteroid5.34E-03
56GO:0045489: pectin biosynthetic process5.34E-03
57GO:0010305: leaf vascular tissue pattern formation5.34E-03
58GO:0009958: positive gravitropism5.34E-03
59GO:0009791: post-embryonic development5.89E-03
60GO:0010090: trichome morphogenesis6.75E-03
61GO:0080167: response to karrikin7.26E-03
62GO:0007267: cell-cell signaling7.35E-03
63GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway7.51E-03
64GO:0009788: negative regulation of abscisic acid-activated signaling pathway8.28E-03
65GO:0016311: dephosphorylation9.25E-03
66GO:0009733: response to auxin9.44E-03
67GO:0048767: root hair elongation9.93E-03
68GO:0010218: response to far red light1.03E-02
69GO:0007568: aging1.06E-02
70GO:0016051: carbohydrate biosynthetic process1.13E-02
71GO:0010114: response to red light1.35E-02
72GO:0009734: auxin-activated signaling pathway1.52E-02
73GO:0006486: protein glycosylation1.67E-02
74GO:0009585: red, far-red light phototransduction1.67E-02
75GO:0051603: proteolysis involved in cellular protein catabolic process1.71E-02
76GO:0035556: intracellular signal transduction2.02E-02
77GO:0016569: covalent chromatin modification2.06E-02
78GO:0018105: peptidyl-serine phosphorylation2.19E-02
79GO:0009845: seed germination2.67E-02
80GO:0040008: regulation of growth3.07E-02
81GO:0045490: pectin catabolic process3.17E-02
82GO:0016567: protein ubiquitination3.32E-02
83GO:0007166: cell surface receptor signaling pathway3.49E-02
84GO:0009617: response to bacterium3.60E-02
85GO:0009826: unidimensional cell growth4.21E-02
86GO:0006970: response to osmotic stress4.56E-02
RankGO TermAdjusted P value
1GO:0004851: uroporphyrin-III C-methyltransferase activity0.00E+00
2GO:0080132: fatty acid alpha-hydroxylase activity5.94E-05
3GO:0009671: nitrate:proton symporter activity5.94E-05
4GO:0010429: methyl-CpNpN binding2.46E-04
5GO:0010428: methyl-CpNpG binding2.46E-04
6GO:0033843: xyloglucan 6-xylosyltransferase activity3.57E-04
7GO:0016762: xyloglucan:xyloglucosyl transferase activity4.00E-04
8GO:0005253: anion channel activity4.78E-04
9GO:0010385: double-stranded methylated DNA binding4.78E-04
10GO:0016722: oxidoreductase activity, oxidizing metal ions5.12E-04
11GO:0004672: protein kinase activity6.13E-04
12GO:0016798: hydrolase activity, acting on glycosyl bonds6.71E-04
13GO:0035252: UDP-xylosyltransferase activity7.40E-04
14GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity7.40E-04
15GO:0005247: voltage-gated chloride channel activity7.40E-04
16GO:0004366: glycerol-3-phosphate O-acyltransferase activity7.40E-04
17GO:0019900: kinase binding8.82E-04
18GO:0004564: beta-fructofuranosidase activity1.18E-03
19GO:0015112: nitrate transmembrane transporter activity1.69E-03
20GO:0004575: sucrose alpha-glucosidase activity1.69E-03
21GO:0004805: trehalose-phosphatase activity1.88E-03
22GO:0008327: methyl-CpG binding2.07E-03
23GO:0016758: transferase activity, transferring hexosyl groups2.70E-03
24GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.11E-03
25GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.11E-03
26GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.11E-03
27GO:0008134: transcription factor binding3.34E-03
28GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.05E-03
29GO:0030570: pectate lyase activity4.30E-03
30GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.73E-03
31GO:0004674: protein serine/threonine kinase activity5.06E-03
32GO:0005507: copper ion binding5.21E-03
33GO:0051015: actin filament binding6.75E-03
34GO:0016759: cellulose synthase activity7.05E-03
35GO:0016791: phosphatase activity7.05E-03
36GO:0015250: water channel activity7.97E-03
37GO:0004842: ubiquitin-protein transferase activity1.23E-02
38GO:0042393: histone binding1.24E-02
39GO:0004185: serine-type carboxypeptidase activity1.35E-02
40GO:0043621: protein self-association1.43E-02
41GO:0016298: lipase activity1.71E-02
42GO:0003779: actin binding2.10E-02
43GO:0016746: transferase activity, transferring acyl groups2.19E-02
44GO:0016829: lyase activity2.67E-02
45GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.02E-02
46GO:0016757: transferase activity, transferring glycosyl groups3.80E-02
47GO:0008168: methyltransferase activity4.21E-02
48GO:0046982: protein heterodimerization activity4.27E-02
49GO:0003682: chromatin binding4.50E-02
RankGO TermAdjusted P value
1GO:0031225: anchored component of membrane1.55E-06
2GO:0009505: plant-type cell wall7.70E-06
3GO:0005775: vacuolar lumen3.57E-04
4GO:0035619: root hair tip3.57E-04
5GO:0046658: anchored component of plasma membrane6.32E-04
6GO:0034707: chloride channel complex7.40E-04
7GO:0032588: trans-Golgi network membrane7.40E-04
8GO:0031209: SCAR complex7.40E-04
9GO:0010369: chromocenter8.82E-04
10GO:0005720: nuclear heterochromatin1.52E-03
11GO:0031901: early endosome membrane1.52E-03
12GO:0000139: Golgi membrane2.56E-03
13GO:0005886: plasma membrane2.67E-03
14GO:0005576: extracellular region2.82E-03
15GO:0048046: apoplast2.98E-03
16GO:0009506: plasmodesma3.06E-03
17GO:0005618: cell wall3.47E-03
18GO:0005773: vacuole5.77E-03
19GO:0000325: plant-type vacuole1.06E-02
20GO:0000786: nucleosome1.10E-02
21GO:0031902: late endosome membrane1.28E-02
22GO:0005789: endoplasmic reticulum membrane1.40E-02
23GO:0005856: cytoskeleton1.47E-02
24GO:0009705: plant-type vacuole membrane3.17E-02
25GO:0005622: intracellular3.39E-02
26GO:0005615: extracellular space3.44E-02
27GO:0005794: Golgi apparatus4.56E-02
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Gene type



Gene DE type