co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G03600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:0061635: regulation of protein complex stability	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0006412: translation	1.17E-20
9	GO:0032544: plastid translation	3.63E-14
10	GO:0042254: ribosome biogenesis	1.26E-12
11	GO:0015979: photosynthesis	1.82E-10
12	GO:0009735: response to cytokinin	1.24E-08
13	GO:0090391: granum assembly	3.65E-08
14	GO:0015995: chlorophyll biosynthetic process	2.22E-07
15	GO:0010027: thylakoid membrane organization	3.74E-06
16	GO:0016024: CDP-diacylglycerol biosynthetic process	5.20E-05
17	GO:0010207: photosystem II assembly	7.75E-05
18	GO:0010236: plastoquinone biosynthetic process	1.04E-04
19	GO:0031365: N-terminal protein amino acid modification	1.04E-04
20	GO:0009658: chloroplast organization	1.35E-04
21	GO:0006655: phosphatidylglycerol biosynthetic process	1.50E-04
22	GO:1901259: chloroplast rRNA processing	2.05E-04
23	GO:0017148: negative regulation of translation	2.05E-04
24	GO:0009772: photosynthetic electron transport in photosystem II	2.67E-04
25	GO:0010196: nonphotochemical quenching	2.67E-04
26	GO:0000413: protein peptidyl-prolyl isomerization	3.04E-04
27	GO:1904964: positive regulation of phytol biosynthetic process	3.22E-04
28	GO:0042759: long-chain fatty acid biosynthetic process	3.22E-04
29	GO:0042371: vitamin K biosynthetic process	3.22E-04
30	GO:0043686: co-translational protein modification	3.22E-04
31	GO:1902458: positive regulation of stomatal opening	3.22E-04
32	GO:0034337: RNA folding	3.22E-04
33	GO:0071588: hydrogen peroxide mediated signaling pathway	3.22E-04
34	GO:0043489: RNA stabilization	3.22E-04
35	GO:1904966: positive regulation of vitamin E biosynthetic process	3.22E-04
36	GO:0008610: lipid biosynthetic process	3.36E-04
37	GO:0010206: photosystem II repair	4.95E-04
38	GO:0006729: tetrahydrobiopterin biosynthetic process	7.02E-04
39	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.02E-04
40	GO:0006568: tryptophan metabolic process	7.02E-04
41	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.02E-04
42	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.02E-04
43	GO:0010115: regulation of abscisic acid biosynthetic process	7.02E-04
44	GO:0010541: acropetal auxin transport	7.02E-04
45	GO:0018119: peptidyl-cysteine S-nitrosylation	7.88E-04
46	GO:0009773: photosynthetic electron transport in photosystem I	7.88E-04
47	GO:0006006: glucose metabolic process	1.02E-03
48	GO:0071492: cellular response to UV-A	1.14E-03
49	GO:0010143: cutin biosynthetic process	1.14E-03
50	GO:0010160: formation of animal organ boundary	1.14E-03
51	GO:0006518: peptide metabolic process	1.14E-03
52	GO:0006986: response to unfolded protein	1.63E-03
53	GO:0055070: copper ion homeostasis	1.63E-03
54	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.63E-03
55	GO:0009102: biotin biosynthetic process	1.63E-03
56	GO:0051085: chaperone mediated protein folding requiring cofactor	1.63E-03
57	GO:0051639: actin filament network formation	1.63E-03
58	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.63E-03
59	GO:0009650: UV protection	1.63E-03
60	GO:0006424: glutamyl-tRNA aminoacylation	1.63E-03
61	GO:1901332: negative regulation of lateral root development	1.63E-03
62	GO:0071486: cellular response to high light intensity	2.19E-03
63	GO:0051764: actin crosslink formation	2.19E-03
64	GO:0022622: root system development	2.19E-03
65	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	2.19E-03
66	GO:0009411: response to UV	2.28E-03
67	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.28E-03
68	GO:0009306: protein secretion	2.47E-03
69	GO:0045038: protein import into chloroplast thylakoid membrane	2.80E-03
70	GO:0016120: carotene biosynthetic process	2.80E-03
71	GO:0032543: mitochondrial translation	2.80E-03
72	GO:0009958: positive gravitropism	3.12E-03
73	GO:0042549: photosystem II stabilization	3.46E-03
74	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.46E-03
75	GO:0060918: auxin transport	3.46E-03
76	GO:0010189: vitamin E biosynthetic process	4.17E-03
77	GO:0010019: chloroplast-nucleus signaling pathway	4.17E-03
78	GO:0009955: adaxial/abaxial pattern specification	4.17E-03
79	GO:0042372: phylloquinone biosynthetic process	4.17E-03
80	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.17E-03
81	GO:0009828: plant-type cell wall loosening	4.67E-03
82	GO:0032880: regulation of protein localization	4.92E-03
83	GO:1900057: positive regulation of leaf senescence	4.92E-03
84	GO:2000070: regulation of response to water deprivation	5.71E-03
85	GO:0048564: photosystem I assembly	5.71E-03
86	GO:0006605: protein targeting	5.71E-03
87	GO:0006526: arginine biosynthetic process	6.55E-03
88	GO:0015996: chlorophyll catabolic process	6.55E-03
89	GO:0007186: G-protein coupled receptor signaling pathway	6.55E-03
90	GO:0018298: protein-chromophore linkage	7.27E-03
91	GO:0009817: defense response to fungus, incompatible interaction	7.27E-03
92	GO:0009051: pentose-phosphate shunt, oxidative branch	7.42E-03
93	GO:0010205: photoinhibition	8.34E-03
94	GO:0006779: porphyrin-containing compound biosynthetic process	8.34E-03
95	GO:0009631: cold acclimation	8.41E-03
96	GO:0048527: lateral root development	8.41E-03
97	GO:0055085: transmembrane transport	8.66E-03
98	GO:0006457: protein folding	8.96E-03
99	GO:0006949: syncytium formation	9.30E-03
100	GO:0006782: protoporphyrinogen IX biosynthetic process	9.30E-03
101	GO:0006535: cysteine biosynthetic process from serine	9.30E-03
102	GO:0034599: cellular response to oxidative stress	9.65E-03
103	GO:0043085: positive regulation of catalytic activity	1.03E-02
104	GO:0030001: metal ion transport	1.05E-02
105	GO:0008361: regulation of cell size	1.13E-02
106	GO:0045037: protein import into chloroplast stroma	1.13E-02
107	GO:0009409: response to cold	1.15E-02
108	GO:0009793: embryo development ending in seed dormancy	1.23E-02
109	GO:0009718: anthocyanin-containing compound biosynthetic process	1.24E-02
110	GO:2000012: regulation of auxin polar transport	1.24E-02
111	GO:0009644: response to high light intensity	1.29E-02
112	GO:0010540: basipetal auxin transport	1.35E-02
113	GO:0019253: reductive pentose-phosphate cycle	1.35E-02
114	GO:0046688: response to copper ion	1.46E-02
115	GO:0009664: plant-type cell wall organization	1.50E-02
116	GO:0010025: wax biosynthetic process	1.58E-02
117	GO:0006636: unsaturated fatty acid biosynthetic process	1.58E-02
118	GO:0051017: actin filament bundle assembly	1.70E-02
119	GO:0019344: cysteine biosynthetic process	1.70E-02
120	GO:0000027: ribosomal large subunit assembly	1.70E-02
121	GO:0061077: chaperone-mediated protein folding	1.95E-02
122	GO:0031408: oxylipin biosynthetic process	1.95E-02
123	GO:0016114: terpenoid biosynthetic process	1.95E-02
124	GO:0030245: cellulose catabolic process	2.08E-02
125	GO:0048443: stamen development	2.35E-02
126	GO:0045454: cell redox homeostasis	2.43E-02
127	GO:0009742: brassinosteroid mediated signaling pathway	2.44E-02
128	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.49E-02
129	GO:0008284: positive regulation of cell proliferation	2.49E-02
130	GO:0080022: primary root development	2.63E-02
131	GO:0042335: cuticle development	2.63E-02
132	GO:0006869: lipid transport	2.73E-02
133	GO:0006662: glycerol ether metabolic process	2.78E-02
134	GO:0010182: sugar mediated signaling pathway	2.78E-02
135	GO:0006520: cellular amino acid metabolic process	2.78E-02
136	GO:0015986: ATP synthesis coupled proton transport	2.92E-02
137	GO:0032259: methylation	2.99E-02
138	GO:0000302: response to reactive oxygen species	3.23E-02
139	GO:0009790: embryo development	3.36E-02
140	GO:0030163: protein catabolic process	3.54E-02
141	GO:0009567: double fertilization forming a zygote and endosperm	3.70E-02
142	GO:0009639: response to red or far red light	3.70E-02
143	GO:0045490: pectin catabolic process	3.96E-02
144	GO:0016126: sterol biosynthetic process	4.19E-02
145	GO:0042128: nitrate assimilation	4.53E-02
146	GO:0009734: auxin-activated signaling pathway	4.81E-02
147	GO:0016311: dephosphorylation	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0004076: biotin synthase activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
4	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
5	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
6	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
9	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
10	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
11	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
12	GO:0019843: rRNA binding	1.27E-24
13	GO:0003735: structural constituent of ribosome	4.72E-22
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.15E-12
15	GO:0005528: FK506 binding	1.69E-09
16	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.67E-05
17	GO:0043023: ribosomal large subunit binding	3.71E-05
18	GO:0016851: magnesium chelatase activity	3.71E-05
19	GO:0016168: chlorophyll binding	7.77E-05
20	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.50E-04
21	GO:0022891: substrate-specific transmembrane transporter activity	2.18E-04
22	GO:0004163: diphosphomevalonate decarboxylase activity	3.22E-04
23	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.22E-04
24	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.22E-04
25	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.22E-04
26	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.22E-04
27	GO:0042586: peptide deformylase activity	3.22E-04
28	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.22E-04
29	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	3.22E-04
30	GO:0005080: protein kinase C binding	3.22E-04
31	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.02E-04
32	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	7.02E-04
33	GO:0031072: heat shock protein binding	1.02E-03
34	GO:0008266: poly(U) RNA binding	1.14E-03
35	GO:0008097: 5S rRNA binding	1.63E-03
36	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.19E-03
37	GO:0004659: prenyltransferase activity	2.19E-03
38	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.19E-03
39	GO:0043495: protein anchor	2.19E-03
40	GO:0004040: amidase activity	2.80E-03
41	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.46E-03
42	GO:0004130: cytochrome-c peroxidase activity	3.46E-03
43	GO:0016688: L-ascorbate peroxidase activity	3.46E-03
44	GO:0004124: cysteine synthase activity	4.17E-03
45	GO:0051920: peroxiredoxin activity	4.17E-03
46	GO:0051082: unfolded protein binding	4.21E-03
47	GO:0004620: phospholipase activity	4.92E-03
48	GO:0008235: metalloexopeptidase activity	4.92E-03
49	GO:0019899: enzyme binding	4.92E-03
50	GO:0004714: transmembrane receptor protein tyrosine kinase activity	5.71E-03
51	GO:0016209: antioxidant activity	5.71E-03
52	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.55E-03
53	GO:0008236: serine-type peptidase activity	6.91E-03
54	GO:0008047: enzyme activator activity	9.30E-03
55	GO:0004177: aminopeptidase activity	1.03E-02
56	GO:0050661: NADP binding	1.05E-02
57	GO:0008378: galactosyltransferase activity	1.13E-02
58	GO:0042802: identical protein binding	1.15E-02
59	GO:0004565: beta-galactosidase activity	1.24E-02
60	GO:0010329: auxin efflux transmembrane transporter activity	1.24E-02
61	GO:0008083: growth factor activity	1.35E-02
62	GO:0051287: NAD binding	1.45E-02
63	GO:0008146: sulfotransferase activity	1.46E-02
64	GO:0005509: calcium ion binding	1.69E-02
65	GO:0051087: chaperone binding	1.83E-02
66	GO:0043424: protein histidine kinase binding	1.83E-02
67	GO:0004707: MAP kinase activity	1.95E-02
68	GO:0030570: pectate lyase activity	2.22E-02
69	GO:0008810: cellulase activity	2.22E-02
70	GO:0003756: protein disulfide isomerase activity	2.35E-02
71	GO:0016746: transferase activity, transferring acyl groups	2.37E-02
72	GO:0047134: protein-disulfide reductase activity	2.49E-02
73	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.78E-02
74	GO:0004791: thioredoxin-disulfide reductase activity	2.92E-02
75	GO:0016491: oxidoreductase activity	3.08E-02
76	GO:0004252: serine-type endopeptidase activity	3.19E-02
77	GO:0030170: pyridoxal phosphate binding	3.19E-02
78	GO:0005507: copper ion binding	3.33E-02
79	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.54E-02
80	GO:0051015: actin filament binding	3.54E-02
81	GO:0016791: phosphatase activity	3.70E-02
82	GO:0008483: transaminase activity	3.86E-02
83	GO:0008289: lipid binding	4.74E-02
84	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0009507: chloroplast	1.10E-63
5	GO:0009570: chloroplast stroma	4.03E-55
6	GO:0009941: chloroplast envelope	3.42E-40
7	GO:0009579: thylakoid	6.22E-40
8	GO:0009535: chloroplast thylakoid membrane	9.05E-38
9	GO:0009534: chloroplast thylakoid	2.15E-26
10	GO:0009543: chloroplast thylakoid lumen	2.29E-26
11	GO:0031977: thylakoid lumen	4.15E-25
12	GO:0005840: ribosome	3.18E-23
13	GO:0009654: photosystem II oxygen evolving complex	1.42E-07
14	GO:0019898: extrinsic component of membrane	1.15E-06
15	GO:0010007: magnesium chelatase complex	1.67E-05
16	GO:0009523: photosystem II	2.97E-05
17	GO:0000311: plastid large ribosomal subunit	5.20E-05
18	GO:0030095: chloroplast photosystem II	7.75E-05
19	GO:0031969: chloroplast membrane	2.21E-04
20	GO:0009533: chloroplast stromal thylakoid	2.67E-04
21	GO:0009547: plastid ribosome	3.22E-04
22	GO:0010319: stromule	6.14E-04
23	GO:0030093: chloroplast photosystem I	7.02E-04
24	GO:0009706: chloroplast inner membrane	7.46E-04
25	GO:0009536: plastid	1.01E-03
26	GO:0000312: plastid small ribosomal subunit	1.14E-03
27	GO:0009528: plastid inner membrane	1.14E-03
28	GO:0009509: chromoplast	1.14E-03
29	GO:0033281: TAT protein transport complex	1.14E-03
30	GO:0015934: large ribosomal subunit	1.19E-03
31	GO:0032432: actin filament bundle	1.63E-03
32	GO:0015935: small ribosomal subunit	1.91E-03
33	GO:0009527: plastid outer membrane	2.19E-03
34	GO:0055035: plastid thylakoid membrane	2.80E-03
35	GO:0016020: membrane	3.16E-03
36	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.46E-03
37	GO:0009295: nucleoid	4.95E-03
38	GO:0005763: mitochondrial small ribosomal subunit	7.42E-03
39	GO:0008180: COP9 signalosome	7.42E-03
40	GO:0005884: actin filament	1.03E-02
41	GO:0032040: small-subunit processome	1.13E-02
42	GO:0009508: plastid chromosome	1.24E-02
43	GO:0042651: thylakoid membrane	1.83E-02
44	GO:0022626: cytosolic ribosome	1.85E-02
45	GO:0009532: plastid stroma	1.95E-02
46	GO:0009522: photosystem I	2.92E-02
47	GO:0005618: cell wall	3.73E-02
48	GO:0030529: intracellular ribonucleoprotein complex	4.19E-02