co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G03290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0039694: viral RNA genome replication	0.00E+00
2	GO:0002191: cap-dependent translational initiation	0.00E+00
3	GO:0031564: transcription antitermination	0.00E+00
4	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
5	GO:0043419: urea catabolic process	0.00E+00
6	GO:0010398: xylogalacturonan metabolic process	0.00E+00
7	GO:0001676: long-chain fatty acid metabolic process	1.63E-05
8	GO:0060548: negative regulation of cell death	3.00E-05
9	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	9.88E-05
10	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	2.02E-04
11	GO:0000077: DNA damage checkpoint	2.02E-04
12	GO:0006805: xenobiotic metabolic process	2.02E-04
13	GO:0043547: positive regulation of GTPase activity	2.02E-04
14	GO:0006422: aspartyl-tRNA aminoacylation	2.02E-04
15	GO:0006680: glucosylceramide catabolic process	2.02E-04
16	GO:0009968: negative regulation of signal transduction	2.02E-04
17	GO:0045454: cell redox homeostasis	4.36E-04
18	GO:0042742: defense response to bacterium	4.46E-04
19	GO:0015914: phospholipid transport	4.52E-04
20	GO:2000072: regulation of defense response to fungus, incompatible interaction	4.52E-04
21	GO:0051262: protein tetramerization	4.52E-04
22	GO:0040020: regulation of meiotic nuclear division	4.52E-04
23	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.52E-04
24	GO:0030010: establishment of cell polarity	4.52E-04
25	GO:0002221: pattern recognition receptor signaling pathway	4.52E-04
26	GO:0015706: nitrate transport	4.70E-04
27	GO:0006499: N-terminal protein myristoylation	4.84E-04
28	GO:0072661: protein targeting to plasma membrane	7.36E-04
29	GO:0006517: protein deglycosylation	7.36E-04
30	GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening	7.36E-04
31	GO:1900140: regulation of seedling development	7.36E-04
32	GO:0061158: 3'-UTR-mediated mRNA destabilization	7.36E-04
33	GO:0080055: low-affinity nitrate transport	7.36E-04
34	GO:0007166: cell surface receptor signaling pathway	7.53E-04
35	GO:0048194: Golgi vesicle budding	1.05E-03
36	GO:0072583: clathrin-dependent endocytosis	1.05E-03
37	GO:0071323: cellular response to chitin	1.05E-03
38	GO:0000187: activation of MAPK activity	1.05E-03
39	GO:0031348: negative regulation of defense response	1.08E-03
40	GO:0010227: floral organ abscission	1.18E-03
41	GO:0000460: maturation of 5.8S rRNA	1.40E-03
42	GO:2000038: regulation of stomatal complex development	1.40E-03
43	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.40E-03
44	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	1.40E-03
45	GO:0010188: response to microbial phytotoxin	1.40E-03
46	GO:0080142: regulation of salicylic acid biosynthetic process	1.40E-03
47	GO:0009620: response to fungus	1.59E-03
48	GO:0006662: glycerol ether metabolic process	1.61E-03
49	GO:0031365: N-terminal protein amino acid modification	1.78E-03
50	GO:0010193: response to ozone	1.98E-03
51	GO:0001731: formation of translation preinitiation complex	2.19E-03
52	GO:0006751: glutathione catabolic process	2.19E-03
53	GO:0000470: maturation of LSU-rRNA	2.19E-03
54	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.19E-03
55	GO:0006468: protein phosphorylation	2.42E-03
56	GO:2000037: regulation of stomatal complex patterning	2.63E-03
57	GO:0015977: carbon fixation	2.63E-03
58	GO:0000911: cytokinesis by cell plate formation	2.63E-03
59	GO:0009612: response to mechanical stimulus	2.63E-03
60	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.63E-03
61	GO:0006694: steroid biosynthetic process	2.63E-03
62	GO:0043090: amino acid import	3.09E-03
63	GO:0070370: cellular heat acclimation	3.09E-03
64	GO:0042128: nitrate assimilation	3.17E-03
65	GO:0009819: drought recovery	3.59E-03
66	GO:0006491: N-glycan processing	3.59E-03
67	GO:0000028: ribosomal small subunit assembly	3.59E-03
68	GO:0008219: cell death	3.71E-03
69	GO:0009407: toxin catabolic process	4.08E-03
70	GO:0006002: fructose 6-phosphate metabolic process	4.10E-03
71	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	4.10E-03
72	GO:0009880: embryonic pattern specification	4.10E-03
73	GO:0006367: transcription initiation from RNA polymerase II promoter	4.10E-03
74	GO:0006470: protein dephosphorylation	4.24E-03
75	GO:0046685: response to arsenic-containing substance	4.65E-03
76	GO:0009821: alkaloid biosynthetic process	4.65E-03
77	GO:0010332: response to gamma radiation	4.65E-03
78	GO:0045087: innate immune response	4.69E-03
79	GO:0034599: cellular response to oxidative stress	4.90E-03
80	GO:0042761: very long-chain fatty acid biosynthetic process	5.21E-03
81	GO:0006887: exocytosis	5.57E-03
82	GO:0006631: fatty acid metabolic process	5.57E-03
83	GO:0000103: sulfate assimilation	5.80E-03
84	GO:0072593: reactive oxygen species metabolic process	6.41E-03
85	GO:0009636: response to toxic substance	6.78E-03
86	GO:0006970: response to osmotic stress	6.84E-03
87	GO:0010582: floral meristem determinacy	7.04E-03
88	GO:0010105: negative regulation of ethylene-activated signaling pathway	7.04E-03
89	GO:0010102: lateral root morphogenesis	7.70E-03
90	GO:0006807: nitrogen compound metabolic process	7.70E-03
91	GO:0010229: inflorescence development	7.70E-03
92	GO:0006364: rRNA processing	8.14E-03
93	GO:0034605: cellular response to heat	8.37E-03
94	GO:0006446: regulation of translational initiation	8.37E-03
95	GO:0010200: response to chitin	8.55E-03
96	GO:0016192: vesicle-mediated transport	8.73E-03
97	GO:0010053: root epidermal cell differentiation	9.07E-03
98	GO:0010167: response to nitrate	9.07E-03
99	GO:0070588: calcium ion transmembrane transport	9.07E-03
100	GO:0009626: plant-type hypersensitive response	1.03E-02
101	GO:0000027: ribosomal large subunit assembly	1.05E-02
102	GO:0030150: protein import into mitochondrial matrix	1.05E-02
103	GO:0010187: negative regulation of seed germination	1.05E-02
104	GO:0009553: embryo sac development	1.13E-02
105	GO:0006874: cellular calcium ion homeostasis	1.13E-02
106	GO:0061077: chaperone-mediated protein folding	1.21E-02
107	GO:0009814: defense response, incompatible interaction	1.29E-02
108	GO:0046686: response to cadmium ion	1.29E-02
109	GO:0080092: regulation of pollen tube growth	1.29E-02
110	GO:0006284: base-excision repair	1.45E-02
111	GO:0042127: regulation of cell proliferation	1.45E-02
112	GO:0042391: regulation of membrane potential	1.62E-02
113	GO:0010501: RNA secondary structure unwinding	1.62E-02
114	GO:0000413: protein peptidyl-prolyl isomerization	1.62E-02
115	GO:0045489: pectin biosynthetic process	1.71E-02
116	GO:0008360: regulation of cell shape	1.71E-02
117	GO:0010197: polar nucleus fusion	1.71E-02
118	GO:0010182: sugar mediated signaling pathway	1.71E-02
119	GO:0061025: membrane fusion	1.80E-02
120	GO:0006952: defense response	1.83E-02
121	GO:0006413: translational initiation	1.88E-02
122	GO:0006623: protein targeting to vacuole	1.89E-02
123	GO:0010183: pollen tube guidance	1.89E-02
124	GO:0009749: response to glucose	1.89E-02
125	GO:0009414: response to water deprivation	1.98E-02
126	GO:0000302: response to reactive oxygen species	1.99E-02
127	GO:0010150: leaf senescence	2.01E-02
128	GO:0009734: auxin-activated signaling pathway	2.07E-02
129	GO:0007264: small GTPase mediated signal transduction	2.08E-02
130	GO:0030163: protein catabolic process	2.18E-02
131	GO:0019760: glucosinolate metabolic process	2.28E-02
132	GO:0006904: vesicle docking involved in exocytosis	2.38E-02
133	GO:0009617: response to bacterium	2.40E-02
134	GO:0051607: defense response to virus	2.48E-02
135	GO:0016126: sterol biosynthetic process	2.58E-02
136	GO:0001666: response to hypoxia	2.58E-02
137	GO:0009615: response to virus	2.58E-02
138	GO:0009607: response to biotic stimulus	2.69E-02
139	GO:0016310: phosphorylation	2.78E-02
140	GO:0006906: vesicle fusion	2.80E-02
141	GO:0015031: protein transport	2.93E-02
142	GO:0009826: unidimensional cell growth	3.00E-02
143	GO:0009817: defense response to fungus, incompatible interaction	3.12E-02
144	GO:0010043: response to zinc ion	3.46E-02
145	GO:0048527: lateral root development	3.46E-02
146	GO:0010119: regulation of stomatal movement	3.46E-02
147	GO:0009631: cold acclimation	3.46E-02
148	GO:0006865: amino acid transport	3.58E-02
149	GO:0048366: leaf development	3.67E-02
150	GO:0009867: jasmonic acid mediated signaling pathway	3.69E-02
151	GO:0006099: tricarboxylic acid cycle	3.81E-02
152	GO:0050832: defense response to fungus	3.82E-02
153	GO:0046777: protein autophosphorylation	4.12E-02
154	GO:0051707: response to other organism	4.42E-02
155	GO:0009651: response to salt stress	4.65E-02
156	GO:0008643: carbohydrate transport	4.68E-02
157	GO:0006886: intracellular protein transport	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
2	GO:0052821: DNA-7-methyladenine glycosylase activity	0.00E+00
3	GO:0003905: alkylbase DNA N-glycosylase activity	0.00E+00
4	GO:0004164: diphthine synthase activity	0.00E+00
5	GO:0004631: phosphomevalonate kinase activity	0.00E+00
6	GO:0050220: prostaglandin-E synthase activity	0.00E+00
7	GO:0098808: mRNA cap binding	0.00E+00
8	GO:0001072: transcription antitermination factor activity, RNA binding	0.00E+00
9	GO:0009039: urease activity	0.00E+00
10	GO:0043916: DNA-7-methylguanine glycosylase activity	0.00E+00
11	GO:0052822: DNA-3-methylguanine glycosylase activity	0.00E+00
12	GO:0000166: nucleotide binding	7.58E-05
13	GO:0005524: ATP binding	9.39E-05
14	GO:0102391: decanoate--CoA ligase activity	9.88E-05
15	GO:0047134: protein-disulfide reductase activity	1.07E-04
16	GO:0043295: glutathione binding	1.31E-04
17	GO:0004467: long-chain fatty acid-CoA ligase activity	1.31E-04
18	GO:0004791: thioredoxin-disulfide reductase activity	1.48E-04
19	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.67E-04
20	GO:0032050: clathrin heavy chain binding	2.02E-04
21	GO:0015085: calcium ion transmembrane transporter activity	2.02E-04
22	GO:0004815: aspartate-tRNA ligase activity	2.02E-04
23	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	2.02E-04
24	GO:0070008: serine-type exopeptidase activity	2.02E-04
25	GO:0004348: glucosylceramidase activity	2.02E-04
26	GO:0015035: protein disulfide oxidoreductase activity	2.72E-04
27	GO:0043021: ribonucleoprotein complex binding	4.52E-04
28	GO:0038199: ethylene receptor activity	4.52E-04
29	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5.33E-04
30	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.52E-04
31	GO:0052692: raffinose alpha-galactosidase activity	7.36E-04
32	GO:0080054: low-affinity nitrate transmembrane transporter activity	7.36E-04
33	GO:0016151: nickel cation binding	7.36E-04
34	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	7.36E-04
35	GO:0004557: alpha-galactosidase activity	7.36E-04
36	GO:0008964: phosphoenolpyruvate carboxylase activity	7.36E-04
37	GO:0003840: gamma-glutamyltransferase activity	7.36E-04
38	GO:0036374: glutathione hydrolase activity	7.36E-04
39	GO:0005528: FK506 binding	8.26E-04
40	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.61E-04
41	GO:0033612: receptor serine/threonine kinase binding	9.94E-04
42	GO:0031176: endo-1,4-beta-xylanase activity	1.05E-03
43	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.05E-03
44	GO:0051740: ethylene binding	1.05E-03
45	GO:0004930: G-protein coupled receptor activity	1.40E-03
46	GO:0016301: kinase activity	1.66E-03
47	GO:0008725: DNA-3-methyladenine glycosylase activity	1.78E-03
48	GO:0035252: UDP-xylosyltransferase activity	2.19E-03
49	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.25E-03
50	GO:0004722: protein serine/threonine phosphatase activity	2.48E-03
51	GO:0004012: phospholipid-translocating ATPase activity	2.63E-03
52	GO:0004602: glutathione peroxidase activity	2.63E-03
53	GO:0008235: metalloexopeptidase activity	3.09E-03
54	GO:0003872: 6-phosphofructokinase activity	3.09E-03
55	GO:0030515: snoRNA binding	3.09E-03
56	GO:0008320: protein transmembrane transporter activity	3.09E-03
57	GO:0005516: calmodulin binding	3.55E-03
58	GO:0004708: MAP kinase kinase activity	3.59E-03
59	GO:0003843: 1,3-beta-D-glucan synthase activity	4.10E-03
60	GO:0003697: single-stranded DNA binding	4.69E-03
61	GO:0016844: strictosidine synthase activity	5.21E-03
62	GO:0015112: nitrate transmembrane transporter activity	5.21E-03
63	GO:0004364: glutathione transferase activity	5.80E-03
64	GO:0004713: protein tyrosine kinase activity	5.80E-03
65	GO:0004673: protein histidine kinase activity	5.80E-03
66	GO:0005484: SNAP receptor activity	6.04E-03
67	GO:0008794: arsenate reductase (glutaredoxin) activity	6.41E-03
68	GO:0001054: RNA polymerase I activity	6.41E-03
69	GO:0004177: aminopeptidase activity	6.41E-03
70	GO:0015293: symporter activity	6.78E-03
71	GO:0043531: ADP binding	7.00E-03
72	GO:0000155: phosphorelay sensor kinase activity	7.70E-03
73	GO:0005388: calcium-transporting ATPase activity	7.70E-03
74	GO:0000175: 3'-5'-exoribonuclease activity	7.70E-03
75	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.14E-03
76	GO:0008131: primary amine oxidase activity	8.37E-03
77	GO:0004535: poly(A)-specific ribonuclease activity	8.37E-03
78	GO:0004190: aspartic-type endopeptidase activity	9.07E-03
79	GO:0030552: cAMP binding	9.07E-03
80	GO:0030553: cGMP binding	9.07E-03
81	GO:0008061: chitin binding	9.07E-03
82	GO:0003712: transcription cofactor activity	9.07E-03
83	GO:0005217: intracellular ligand-gated ion channel activity	9.07E-03
84	GO:0004970: ionotropic glutamate receptor activity	9.07E-03
85	GO:0046872: metal ion binding	9.66E-03
86	GO:0003954: NADH dehydrogenase activity	1.05E-02
87	GO:0005216: ion channel activity	1.13E-02
88	GO:0008408: 3'-5' exonuclease activity	1.21E-02
89	GO:0004540: ribonuclease activity	1.21E-02
90	GO:0005507: copper ion binding	1.21E-02
91	GO:0004674: protein serine/threonine kinase activity	1.43E-02
92	GO:0008514: organic anion transmembrane transporter activity	1.45E-02
93	GO:0003727: single-stranded RNA binding	1.45E-02
94	GO:0005249: voltage-gated potassium channel activity	1.62E-02
95	GO:0030551: cyclic nucleotide binding	1.62E-02
96	GO:0008536: Ran GTPase binding	1.71E-02
97	GO:0004872: receptor activity	1.89E-02
98	GO:0048038: quinone binding	1.99E-02
99	GO:0005515: protein binding	2.07E-02
100	GO:0003743: translation initiation factor activity	2.35E-02
101	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.38E-02
102	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.90E-02
103	GO:0004721: phosphoprotein phosphatase activity	2.90E-02
104	GO:0004004: ATP-dependent RNA helicase activity	2.90E-02
105	GO:0008168: methyltransferase activity	3.00E-02
106	GO:0008236: serine-type peptidase activity	3.01E-02
107	GO:0000287: magnesium ion binding	3.06E-02
108	GO:0005096: GTPase activator activity	3.23E-02
109	GO:0003993: acid phosphatase activity	3.81E-02
110	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.93E-02
111	GO:0000149: SNARE binding	3.93E-02
112	GO:0005198: structural molecule activity	4.80E-02
113	GO:0042803: protein homodimerization activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0019034: viral replication complex	0.00E+00
2	GO:0005674: transcription factor TFIIF complex	0.00E+00
3	GO:0005886: plasma membrane	6.06E-07
4	GO:0009504: cell plate	1.64E-04
5	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	2.02E-04
6	GO:0030014: CCR4-NOT complex	2.02E-04
7	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.48E-04
8	GO:0031304: intrinsic component of mitochondrial inner membrane	4.52E-04
9	GO:0070545: PeBoW complex	4.52E-04
10	GO:0046861: glyoxysomal membrane	7.36E-04
11	GO:0005829: cytosol	8.02E-04
12	GO:0005773: vacuole	8.60E-04
13	GO:0070062: extracellular exosome	1.05E-03
14	GO:0005834: heterotrimeric G-protein complex	1.53E-03
15	GO:0005945: 6-phosphofructokinase complex	1.78E-03
16	GO:0016282: eukaryotic 43S preinitiation complex	2.19E-03
17	GO:0033290: eukaryotic 48S preinitiation complex	2.63E-03
18	GO:0030687: preribosome, large subunit precursor	3.09E-03
19	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.09E-03
20	GO:0005789: endoplasmic reticulum membrane	3.83E-03
21	GO:0005802: trans-Golgi network	3.96E-03
22	GO:0009514: glyoxysome	4.10E-03
23	GO:0000148: 1,3-beta-D-glucan synthase complex	4.10E-03
24	GO:0005736: DNA-directed RNA polymerase I complex	4.65E-03
25	GO:0031901: early endosome membrane	4.65E-03
26	GO:0005783: endoplasmic reticulum	4.78E-03
27	GO:0005768: endosome	4.96E-03
28	GO:0016021: integral component of membrane	5.20E-03
29	GO:0017119: Golgi transport complex	5.80E-03
30	GO:0030125: clathrin vesicle coat	5.80E-03
31	GO:0032040: small-subunit processome	7.04E-03
32	GO:0048046: apoplast	7.49E-03
33	GO:0005777: peroxisome	8.74E-03
34	GO:0043234: protein complex	9.79E-03
35	GO:0009506: plasmodesma	1.03E-02
36	GO:0005794: Golgi apparatus	1.05E-02
37	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.45E-02
38	GO:0019898: extrinsic component of membrane	1.89E-02
39	GO:0005737: cytoplasm	1.94E-02
40	GO:0005887: integral component of plasma membrane	1.98E-02
41	GO:0000145: exocyst	2.08E-02
42	GO:0032580: Golgi cisterna membrane	2.28E-02
43	GO:0000932: P-body	2.58E-02
44	GO:0019005: SCF ubiquitin ligase complex	3.12E-02
45	GO:0031201: SNARE complex	4.18E-02
46	GO:0031902: late endosome membrane	4.18E-02
47	GO:0005730: nucleolus	4.42E-02