co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G02280

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0006642: triglyceride mobilization	0.00E+00
5	GO:0006223: uracil salvage	0.00E+00
6	GO:0035674: tricarboxylic acid transmembrane transport	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
9	GO:0010394: homogalacturonan metabolic process	0.00E+00
10	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
11	GO:0006399: tRNA metabolic process	0.00E+00
12	GO:0002184: cytoplasmic translational termination	0.00E+00
13	GO:0006412: translation	1.74E-14
14	GO:0042254: ribosome biogenesis	1.33E-08
15	GO:0032544: plastid translation	5.46E-08
16	GO:0015979: photosynthesis	5.68E-08
17	GO:0009658: chloroplast organization	3.26E-06
18	GO:0006633: fatty acid biosynthetic process	8.53E-06
19	GO:0009735: response to cytokinin	1.27E-05
20	GO:0010027: thylakoid membrane organization	2.57E-05
21	GO:0006457: protein folding	4.05E-05
22	GO:0010236: plastoquinone biosynthetic process	5.76E-05
23	GO:0042372: phylloquinone biosynthetic process	1.17E-04
24	GO:0000413: protein peptidyl-prolyl isomerization	1.49E-04
25	GO:0043489: RNA stabilization	2.25E-04
26	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	2.25E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	2.25E-04
28	GO:1904964: positive regulation of phytol biosynthetic process	2.25E-04
29	GO:0042371: vitamin K biosynthetic process	2.25E-04
30	GO:0043686: co-translational protein modification	2.25E-04
31	GO:0045488: pectin metabolic process	2.25E-04
32	GO:0006835: dicarboxylic acid transport	2.25E-04
33	GO:0071588: hydrogen peroxide mediated signaling pathway	2.25E-04
34	GO:0060627: regulation of vesicle-mediated transport	2.25E-04
35	GO:0009657: plastid organization	2.44E-04
36	GO:0009073: aromatic amino acid family biosynthetic process	4.76E-04
37	GO:0043085: positive regulation of catalytic activity	4.76E-04
38	GO:0006695: cholesterol biosynthetic process	5.00E-04
39	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.00E-04
40	GO:0071258: cellular response to gravity	5.00E-04
41	GO:0006729: tetrahydrobiopterin biosynthetic process	5.00E-04
42	GO:0006568: tryptophan metabolic process	5.00E-04
43	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.00E-04
44	GO:0010207: photosystem II assembly	6.96E-04
45	GO:0010581: regulation of starch biosynthetic process	8.13E-04
46	GO:0090391: granum assembly	8.13E-04
47	GO:0019563: glycerol catabolic process	8.13E-04
48	GO:0032504: multicellular organism reproduction	8.13E-04
49	GO:0006631: fatty acid metabolic process	8.67E-04
50	GO:0006241: CTP biosynthetic process	1.16E-03
51	GO:0006165: nucleoside diphosphate phosphorylation	1.16E-03
52	GO:0006228: UTP biosynthetic process	1.16E-03
53	GO:0010088: phloem development	1.16E-03
54	GO:0006986: response to unfolded protein	1.16E-03
55	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.16E-03
56	GO:2001141: regulation of RNA biosynthetic process	1.16E-03
57	GO:0051085: chaperone mediated protein folding requiring cofactor	1.16E-03
58	GO:0006661: phosphatidylinositol biosynthetic process	1.54E-03
59	GO:0006183: GTP biosynthetic process	1.54E-03
60	GO:0044206: UMP salvage	1.54E-03
61	GO:0042335: cuticle development	1.73E-03
62	GO:0048359: mucilage metabolic process involved in seed coat development	1.97E-03
63	GO:0043097: pyrimidine nucleoside salvage	1.97E-03
64	GO:0031365: N-terminal protein amino acid modification	1.97E-03
65	GO:0006655: phosphatidylglycerol biosynthetic process	2.43E-03
66	GO:0006206: pyrimidine nucleobase metabolic process	2.43E-03
67	GO:0042549: photosystem II stabilization	2.43E-03
68	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.43E-03
69	GO:0006555: methionine metabolic process	2.43E-03
70	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.91E-03
71	GO:1901259: chloroplast rRNA processing	2.91E-03
72	GO:0017148: negative regulation of translation	2.91E-03
73	GO:0010189: vitamin E biosynthetic process	2.91E-03
74	GO:0009854: oxidative photosynthetic carbon pathway	2.91E-03
75	GO:0010019: chloroplast-nucleus signaling pathway	2.91E-03
76	GO:0009955: adaxial/abaxial pattern specification	2.91E-03
77	GO:0042744: hydrogen peroxide catabolic process	3.40E-03
78	GO:0010196: nonphotochemical quenching	3.43E-03
79	GO:0006400: tRNA modification	3.43E-03
80	GO:0009610: response to symbiotic fungus	3.43E-03
81	GO:0009772: photosynthetic electron transport in photosystem II	3.43E-03
82	GO:0009790: embryo development	3.51E-03
83	GO:0015995: chlorophyll biosynthetic process	3.89E-03
84	GO:0048564: photosystem I assembly	3.98E-03
85	GO:0009817: defense response to fungus, incompatible interaction	4.31E-03
86	GO:0055114: oxidation-reduction process	4.44E-03
87	GO:0071482: cellular response to light stimulus	4.56E-03
88	GO:0019430: removal of superoxide radicals	4.56E-03
89	GO:0006526: arginine biosynthetic process	4.56E-03
90	GO:0009631: cold acclimation	4.98E-03
91	GO:0009051: pentose-phosphate shunt, oxidative branch	5.16E-03
92	GO:0045337: farnesyl diphosphate biosynthetic process	5.16E-03
93	GO:0033384: geranyl diphosphate biosynthetic process	5.16E-03
94	GO:0015780: nucleotide-sugar transport	5.16E-03
95	GO:0034599: cellular response to oxidative stress	5.71E-03
96	GO:0035999: tetrahydrofolate interconversion	5.79E-03
97	GO:0042761: very long-chain fatty acid biosynthetic process	5.79E-03
98	GO:0010380: regulation of chlorophyll biosynthetic process	5.79E-03
99	GO:0006839: mitochondrial transport	6.22E-03
100	GO:0006535: cysteine biosynthetic process from serine	6.45E-03
101	GO:0043069: negative regulation of programmed cell death	6.45E-03
102	GO:0045036: protein targeting to chloroplast	6.45E-03
103	GO:0006352: DNA-templated transcription, initiation	7.13E-03
104	GO:0018119: peptidyl-cysteine S-nitrosylation	7.13E-03
105	GO:0045037: protein import into chloroplast stroma	7.84E-03
106	GO:0006006: glucose metabolic process	8.57E-03
107	GO:0006094: gluconeogenesis	8.57E-03
108	GO:0042538: hyperosmotic salinity response	8.84E-03
109	GO:0010020: chloroplast fission	9.33E-03
110	GO:0019253: reductive pentose-phosphate cycle	9.33E-03
111	GO:0010025: wax biosynthetic process	1.09E-02
112	GO:0006833: water transport	1.09E-02
113	GO:0006096: glycolytic process	1.12E-02
114	GO:0000027: ribosomal large subunit assembly	1.17E-02
115	GO:0019344: cysteine biosynthetic process	1.17E-02
116	GO:0009116: nucleoside metabolic process	1.17E-02
117	GO:0045454: cell redox homeostasis	1.25E-02
118	GO:0008299: isoprenoid biosynthetic process	1.26E-02
119	GO:0006418: tRNA aminoacylation for protein translation	1.26E-02
120	GO:0007017: microtubule-based process	1.26E-02
121	GO:0009409: response to cold	1.32E-02
122	GO:0006730: one-carbon metabolic process	1.43E-02
123	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.53E-02
124	GO:0009411: response to UV	1.53E-02
125	GO:0040007: growth	1.53E-02
126	GO:0006397: mRNA processing	1.72E-02
127	GO:0080022: primary root development	1.81E-02
128	GO:0034220: ion transmembrane transport	1.81E-02
129	GO:0045489: pectin biosynthetic process	1.91E-02
130	GO:0006520: cellular amino acid metabolic process	1.91E-02
131	GO:0006662: glycerol ether metabolic process	1.91E-02
132	GO:0007018: microtubule-based movement	2.01E-02
133	GO:0008654: phospholipid biosynthetic process	2.11E-02
134	GO:0000302: response to reactive oxygen species	2.22E-02
135	GO:0016032: viral process	2.32E-02
136	GO:0032502: developmental process	2.32E-02
137	GO:0009828: plant-type cell wall loosening	2.54E-02
138	GO:0009567: double fertilization forming a zygote and endosperm	2.54E-02
139	GO:0008380: RNA splicing	2.80E-02
140	GO:0016311: dephosphorylation	3.36E-02
141	GO:0048481: plant ovule development	3.48E-02
142	GO:0018298: protein-chromophore linkage	3.48E-02
143	GO:0009853: photorespiration	4.12E-02
144	GO:0045087: innate immune response	4.12E-02
145	GO:0009637: response to blue light	4.12E-02
146	GO:0006810: transport	4.51E-02
147	GO:0030001: metal ion transport	4.52E-02
148	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.64E-02
149	GO:0042542: response to hydrogen peroxide	4.79E-02
150	GO:0046686: response to cadmium ion	4.90E-02
151	GO:0010114: response to red light	4.93E-02
152	GO:0051707: response to other organism	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
3	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0008887: glycerate kinase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
9	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
10	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
11	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
12	GO:0015142: tricarboxylic acid transmembrane transporter activity	0.00E+00
13	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
14	GO:0019843: rRNA binding	5.52E-18
15	GO:0003735: structural constituent of ribosome	3.38E-12
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.69E-08
17	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	2.37E-06
18	GO:0043023: ribosomal large subunit binding	1.97E-05
19	GO:0004045: aminoacyl-tRNA hydrolase activity	3.60E-05
20	GO:0004560: alpha-L-fucosidase activity	2.25E-04
21	GO:0004807: triose-phosphate isomerase activity	2.25E-04
22	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.25E-04
23	GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity	2.25E-04
24	GO:0017169: CDP-alcohol phosphatidyltransferase activity	2.25E-04
25	GO:0080132: fatty acid alpha-hydroxylase activity	2.25E-04
26	GO:0042586: peptide deformylase activity	2.25E-04
27	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.25E-04
28	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	2.25E-04
29	GO:0005080: protein kinase C binding	2.25E-04
30	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.25E-04
31	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.25E-04
32	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.25E-04
33	GO:0008047: enzyme activator activity	4.12E-04
34	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.00E-04
35	GO:0000774: adenyl-nucleotide exchange factor activity	5.00E-04
36	GO:0008266: poly(U) RNA binding	6.96E-04
37	GO:0070330: aromatase activity	8.13E-04
38	GO:0005310: dicarboxylic acid transmembrane transporter activity	8.13E-04
39	GO:0002161: aminoacyl-tRNA editing activity	8.13E-04
40	GO:0004148: dihydrolipoyl dehydrogenase activity	8.13E-04
41	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.13E-04
42	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	8.13E-04
43	GO:0005528: FK506 binding	9.55E-04
44	GO:0051087: chaperone binding	1.05E-03
45	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.16E-03
46	GO:0016851: magnesium chelatase activity	1.16E-03
47	GO:0004550: nucleoside diphosphate kinase activity	1.16E-03
48	GO:0008097: 5S rRNA binding	1.16E-03
49	GO:0017077: oxidative phosphorylation uncoupler activity	1.16E-03
50	GO:0016987: sigma factor activity	1.54E-03
51	GO:0043495: protein anchor	1.54E-03
52	GO:0004659: prenyltransferase activity	1.54E-03
53	GO:0001053: plastid sigma factor activity	1.54E-03
54	GO:0004845: uracil phosphoribosyltransferase activity	1.54E-03
55	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.54E-03
56	GO:0016836: hydro-lyase activity	1.54E-03
57	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.54E-03
58	GO:0005509: calcium ion binding	1.92E-03
59	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.97E-03
60	GO:0004040: amidase activity	1.97E-03
61	GO:0018685: alkane 1-monooxygenase activity	1.97E-03
62	GO:0004791: thioredoxin-disulfide reductase activity	2.00E-03
63	GO:0051082: unfolded protein binding	2.17E-03
64	GO:0004130: cytochrome-c peroxidase activity	2.43E-03
65	GO:0016208: AMP binding	2.43E-03
66	GO:0016688: L-ascorbate peroxidase activity	2.43E-03
67	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.61E-03
68	GO:0015631: tubulin binding	2.91E-03
69	GO:0102391: decanoate--CoA ligase activity	2.91E-03
70	GO:0004849: uridine kinase activity	2.91E-03
71	GO:0004124: cysteine synthase activity	2.91E-03
72	GO:0051920: peroxiredoxin activity	2.91E-03
73	GO:0005200: structural constituent of cytoskeleton	2.95E-03
74	GO:0019899: enzyme binding	3.43E-03
75	GO:0004467: long-chain fatty acid-CoA ligase activity	3.43E-03
76	GO:0016491: oxidoreductase activity	3.88E-03
77	GO:0016209: antioxidant activity	3.98E-03
78	GO:0005507: copper ion binding	4.22E-03
79	GO:0004337: geranyltranstransferase activity	5.16E-03
80	GO:0004161: dimethylallyltranstransferase activity	7.13E-03
81	GO:0000049: tRNA binding	7.84E-03
82	GO:0052689: carboxylic ester hydrolase activity	1.13E-02
83	GO:0043424: protein histidine kinase binding	1.26E-02
84	GO:0004176: ATP-dependent peptidase activity	1.34E-02
85	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.34E-02
86	GO:0022891: substrate-specific transmembrane transporter activity	1.53E-02
87	GO:0008514: organic anion transmembrane transporter activity	1.62E-02
88	GO:0003924: GTPase activity	1.63E-02
89	GO:0047134: protein-disulfide reductase activity	1.71E-02
90	GO:0004812: aminoacyl-tRNA ligase activity	1.71E-02
91	GO:0005525: GTP binding	1.90E-02
92	GO:0008080: N-acetyltransferase activity	1.91E-02
93	GO:0008237: metallopeptidase activity	2.65E-02
94	GO:0015250: water channel activity	2.88E-02
95	GO:0042802: identical protein binding	2.99E-02
96	GO:0016168: chlorophyll binding	3.00E-02
97	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.36E-02
98	GO:0008168: methyltransferase activity	3.50E-02
99	GO:0004601: peroxidase activity	3.63E-02
100	GO:0016788: hydrolase activity, acting on ester bonds	3.70E-02
101	GO:0030145: manganese ion binding	3.86E-02
102	GO:0003746: translation elongation factor activity	4.12E-02
103	GO:0003993: acid phosphatase activity	4.25E-02
104	GO:0016740: transferase activity	4.28E-02
105	GO:0051539: 4 iron, 4 sulfur cluster binding	4.52E-02
106	GO:0050661: NADP binding	4.52E-02
107	GO:0003729: mRNA binding	4.59E-02
108	GO:0003723: RNA binding	4.98E-02
109	GO:0020037: heme binding	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009570: chloroplast stroma	4.35E-57
3	GO:0009507: chloroplast	2.60E-56
4	GO:0009941: chloroplast envelope	1.04E-33
5	GO:0009579: thylakoid	1.19E-32
6	GO:0009543: chloroplast thylakoid lumen	1.12E-19
7	GO:0031977: thylakoid lumen	3.15E-19
8	GO:0009535: chloroplast thylakoid membrane	6.71E-14
9	GO:0005840: ribosome	2.57E-13
10	GO:0009534: chloroplast thylakoid	9.19E-13
11	GO:0009654: photosystem II oxygen evolving complex	4.49E-10
12	GO:0019898: extrinsic component of membrane	5.78E-09
13	GO:0030095: chloroplast photosystem II	3.47E-05
14	GO:0009536: plastid	5.96E-05
15	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.25E-04
16	GO:0009515: granal stacked thylakoid	2.25E-04
17	GO:0009547: plastid ribosome	2.25E-04
18	GO:0045298: tubulin complex	2.95E-04
19	GO:0030529: intracellular ribonucleoprotein complex	3.67E-04
20	GO:0016020: membrane	5.15E-04
21	GO:0000311: plastid large ribosomal subunit	5.45E-04
22	GO:0000312: plastid small ribosomal subunit	6.96E-04
23	GO:0010007: magnesium chelatase complex	8.13E-04
24	GO:0009509: chromoplast	8.13E-04
25	GO:0042651: thylakoid membrane	1.05E-03
26	GO:0015935: small ribosomal subunit	1.15E-03
27	GO:0009532: plastid stroma	1.15E-03
28	GO:0031969: chloroplast membrane	2.07E-03
29	GO:0009533: chloroplast stromal thylakoid	3.43E-03
30	GO:0005763: mitochondrial small ribosomal subunit	5.16E-03
31	GO:0005802: trans-Golgi network	5.19E-03
32	GO:0005768: endosome	6.49E-03
33	GO:0022626: cytosolic ribosome	8.38E-03
34	GO:0030659: cytoplasmic vesicle membrane	9.33E-03
35	GO:0009505: plant-type cell wall	1.16E-02
36	GO:0005618: cell wall	1.25E-02
37	GO:0009706: chloroplast inner membrane	1.36E-02
38	GO:0005871: kinesin complex	1.71E-02
39	GO:0005623: cell	1.75E-02
40	GO:0009523: photosystem II	2.11E-02
41	GO:0005759: mitochondrial matrix	2.14E-02
42	GO:0005778: peroxisomal membrane	2.65E-02
43	GO:0010319: stromule	2.65E-02
44	GO:0022627: cytosolic small ribosomal subunit	3.11E-02
45	GO:0046658: anchored component of plasma membrane	3.11E-02
46	GO:0005874: microtubule	4.34E-02
47	GO:0005739: mitochondrion	4.67E-02
48	GO:0022625: cytosolic large ribosomal subunit	4.72E-02