co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G65890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061635: regulation of protein complex stability	0.00E+00
2	GO:0009773: photosynthetic electron transport in photosystem I	2.06E-06
3	GO:0009913: epidermal cell differentiation	1.89E-05
4	GO:0015979: photosynthesis	3.97E-05
5	GO:0015995: chlorophyll biosynthetic process	7.85E-05
6	GO:0080051: cutin transport	8.96E-05
7	GO:0043686: co-translational protein modification	8.96E-05
8	GO:0090548: response to nitrate starvation	8.96E-05
9	GO:0071588: hydrogen peroxide mediated signaling pathway	8.96E-05
10	GO:1902025: nitrate import	8.96E-05
11	GO:0009735: response to cytokinin	1.91E-04
12	GO:0035304: regulation of protein dephosphorylation	2.12E-04
13	GO:0010115: regulation of abscisic acid biosynthetic process	2.12E-04
14	GO:0001736: establishment of planar polarity	2.12E-04
15	GO:0015908: fatty acid transport	2.12E-04
16	GO:0090391: granum assembly	3.54E-04
17	GO:0042335: cuticle development	5.13E-04
18	GO:0006546: glycine catabolic process	6.78E-04
19	GO:0010021: amylopectin biosynthetic process	6.78E-04
20	GO:0010222: stem vascular tissue pattern formation	6.78E-04
21	GO:0045727: positive regulation of translation	6.78E-04
22	GO:0015994: chlorophyll metabolic process	6.78E-04
23	GO:0080110: sporopollenin biosynthetic process	8.59E-04
24	GO:0006564: L-serine biosynthetic process	8.59E-04
25	GO:0048497: maintenance of floral organ identity	8.59E-04
26	GO:0031365: N-terminal protein amino acid modification	8.59E-04
27	GO:0006461: protein complex assembly	8.59E-04
28	GO:0009107: lipoate biosynthetic process	8.59E-04
29	GO:0010027: thylakoid membrane organization	9.61E-04
30	GO:0006561: proline biosynthetic process	1.05E-03
31	GO:0042549: photosystem II stabilization	1.05E-03
32	GO:0010019: chloroplast-nucleus signaling pathway	1.25E-03
33	GO:0006400: tRNA modification	1.46E-03
34	GO:0009395: phospholipid catabolic process	1.46E-03
35	GO:0009772: photosynthetic electron transport in photosystem II	1.46E-03
36	GO:0010196: nonphotochemical quenching	1.46E-03
37	GO:0006605: protein targeting	1.69E-03
38	GO:0008610: lipid biosynthetic process	1.69E-03
39	GO:0005978: glycogen biosynthetic process	1.69E-03
40	GO:0032544: plastid translation	1.93E-03
41	GO:0009657: plastid organization	1.93E-03
42	GO:0005982: starch metabolic process	2.43E-03
43	GO:0010205: photoinhibition	2.43E-03
44	GO:0009299: mRNA transcription	2.70E-03
45	GO:0009688: abscisic acid biosynthetic process	2.70E-03
46	GO:0048829: root cap development	2.70E-03
47	GO:0019684: photosynthesis, light reaction	2.98E-03
48	GO:0009750: response to fructose	2.98E-03
49	GO:0048765: root hair cell differentiation	2.98E-03
50	GO:0000038: very long-chain fatty acid metabolic process	2.98E-03
51	GO:0016024: CDP-diacylglycerol biosynthetic process	3.26E-03
52	GO:0010628: positive regulation of gene expression	3.56E-03
53	GO:0010588: cotyledon vascular tissue pattern formation	3.56E-03
54	GO:0010207: photosystem II assembly	3.86E-03
55	GO:0010143: cutin biosynthetic process	3.86E-03
56	GO:0009695: jasmonic acid biosynthetic process	5.17E-03
57	GO:0007017: microtubule-based process	5.17E-03
58	GO:0042744: hydrogen peroxide catabolic process	5.38E-03
59	GO:0031408: oxylipin biosynthetic process	5.52E-03
60	GO:0003333: amino acid transmembrane transport	5.52E-03
61	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	6.23E-03
62	GO:0009306: protein secretion	6.61E-03
63	GO:0010584: pollen exine formation	6.61E-03
64	GO:0009416: response to light stimulus	6.66E-03
65	GO:0080022: primary root development	7.37E-03
66	GO:0009958: positive gravitropism	7.77E-03
67	GO:0010182: sugar mediated signaling pathway	7.77E-03
68	GO:0048544: recognition of pollen	8.17E-03
69	GO:0015986: ATP synthesis coupled proton transport	8.17E-03
70	GO:0048825: cotyledon development	8.58E-03
71	GO:0019252: starch biosynthetic process	8.58E-03
72	GO:0000302: response to reactive oxygen species	8.99E-03
73	GO:0016032: viral process	9.42E-03
74	GO:0009828: plant-type cell wall loosening	1.03E-02
75	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.30E-02
76	GO:0010311: lateral root formation	1.46E-02
77	GO:0009631: cold acclimation	1.56E-02
78	GO:0006865: amino acid transport	1.61E-02
79	GO:0034599: cellular response to oxidative stress	1.72E-02
80	GO:0009926: auxin polar transport	1.99E-02
81	GO:0008152: metabolic process	2.05E-02
82	GO:0006855: drug transmembrane transport	2.22E-02
83	GO:0009664: plant-type cell wall organization	2.34E-02
84	GO:0009409: response to cold	2.39E-02
85	GO:0006364: rRNA processing	2.46E-02
86	GO:0005975: carbohydrate metabolic process	2.76E-02
87	GO:0009624: response to nematode	3.16E-02
88	GO:0009742: brassinosteroid mediated signaling pathway	3.30E-02
89	GO:0009845: seed germination	3.92E-02
90	GO:0006633: fatty acid biosynthetic process	4.36E-02
91	GO:0040008: regulation of growth	4.51E-02
92	GO:0009451: RNA modification	4.74E-02
93	GO:0016310: phosphorylation	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0004321: fatty-acyl-CoA synthase activity	8.96E-05
6	GO:0015245: fatty acid transporter activity	8.96E-05
7	GO:0010242: oxygen evolving activity	8.96E-05
8	GO:0042586: peptide deformylase activity	8.96E-05
9	GO:0008266: poly(U) RNA binding	1.97E-04
10	GO:0003844: 1,4-alpha-glucan branching enzyme activity	2.12E-04
11	GO:0016630: protochlorophyllide reductase activity	2.12E-04
12	GO:0047746: chlorophyllase activity	2.12E-04
13	GO:0004617: phosphoglycerate dehydrogenase activity	2.12E-04
14	GO:0005528: FK506 binding	2.77E-04
15	GO:0043169: cation binding	3.54E-04
16	GO:0016992: lipoate synthase activity	3.54E-04
17	GO:0016851: magnesium chelatase activity	5.10E-04
18	GO:0050662: coenzyme binding	5.92E-04
19	GO:0042277: peptide binding	6.78E-04
20	GO:0010011: auxin binding	6.78E-04
21	GO:0010328: auxin influx transmembrane transporter activity	6.78E-04
22	GO:0003959: NADPH dehydrogenase activity	8.59E-04
23	GO:0016688: L-ascorbate peroxidase activity	1.05E-03
24	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.05E-03
25	GO:0004130: cytochrome-c peroxidase activity	1.05E-03
26	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.05E-03
27	GO:0016788: hydrolase activity, acting on ester bonds	1.54E-03
28	GO:0004033: aldo-keto reductase (NADP) activity	1.69E-03
29	GO:0016207: 4-coumarate-CoA ligase activity	2.18E-03
30	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.32E-03
31	GO:0004022: alcohol dehydrogenase (NAD) activity	3.56E-03
32	GO:0004565: beta-galactosidase activity	3.56E-03
33	GO:0016746: transferase activity, transferring acyl groups	3.90E-03
34	GO:0003824: catalytic activity	4.30E-03
35	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.50E-03
36	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.50E-03
37	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.50E-03
38	GO:0019843: rRNA binding	4.73E-03
39	GO:0004176: ATP-dependent peptidase activity	5.52E-03
40	GO:0016491: oxidoreductase activity	5.66E-03
41	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	7.77E-03
42	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	8.29E-03
43	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	9.48E-03
44	GO:0030246: carbohydrate binding	9.72E-03
45	GO:0016791: phosphatase activity	1.03E-02
46	GO:0005200: structural constituent of cytoskeleton	1.07E-02
47	GO:0016597: amino acid binding	1.12E-02
48	GO:0016787: hydrolase activity	1.18E-02
49	GO:0052689: carboxylic ester hydrolase activity	1.39E-02
50	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.41E-02
51	GO:0003746: translation elongation factor activity	1.66E-02
52	GO:0003993: acid phosphatase activity	1.72E-02
53	GO:0051539: 4 iron, 4 sulfur cluster binding	1.82E-02
54	GO:0009055: electron carrier activity	1.99E-02
55	GO:0015293: symporter activity	2.16E-02
56	GO:0051287: NAD binding	2.28E-02
57	GO:0015171: amino acid transmembrane transporter activity	2.65E-02
58	GO:0016874: ligase activity	3.03E-02
59	GO:0016301: kinase activity	4.23E-02
60	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	1.82E-18
2	GO:0009507: chloroplast	8.66E-17
3	GO:0009535: chloroplast thylakoid membrane	8.69E-13
4	GO:0009579: thylakoid	3.75E-11
5	GO:0009570: chloroplast stroma	1.28E-10
6	GO:0009543: chloroplast thylakoid lumen	2.35E-09
7	GO:0009941: chloroplast envelope	1.79E-07
8	GO:0031977: thylakoid lumen	2.02E-07
9	GO:0009515: granal stacked thylakoid	8.96E-05
10	GO:0030095: chloroplast photosystem II	1.97E-04
11	GO:0009654: photosystem II oxygen evolving complex	3.07E-04
12	GO:0009897: external side of plasma membrane	3.54E-04
13	GO:0010007: magnesium chelatase complex	3.54E-04
14	GO:0015630: microtubule cytoskeleton	5.10E-04
15	GO:0010287: plastoglobule	5.49E-04
16	GO:0019898: extrinsic component of membrane	6.33E-04
17	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.05E-03
18	GO:0009986: cell surface	1.46E-03
19	GO:0009533: chloroplast stromal thylakoid	1.46E-03
20	GO:0009501: amyloplast	1.69E-03
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.18E-03
22	GO:0005578: proteinaceous extracellular matrix	3.56E-03
23	GO:0015935: small ribosomal subunit	5.52E-03
24	GO:0009523: photosystem II	8.58E-03
25	GO:0010319: stromule	1.07E-02
26	GO:0031969: chloroplast membrane	1.25E-02
27	GO:0009505: plant-type cell wall	2.17E-02
28	GO:0048046: apoplast	2.61E-02
29	GO:0005618: cell wall	2.96E-02
30	GO:0005777: peroxisome	3.78E-02
31	GO:0005759: mitochondrial matrix	4.36E-02