co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G65480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009877: nodulation	0.00E+00
2	GO:0042906: xanthine transport	0.00E+00
3	GO:0030644: cellular chloride ion homeostasis	0.00E+00
4	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0051928: positive regulation of calcium ion transport	0.00E+00
7	GO:0009768: photosynthesis, light harvesting in photosystem I	2.42E-14
8	GO:0018298: protein-chromophore linkage	9.52E-10
9	GO:0009645: response to low light intensity stimulus	1.35E-08
10	GO:0010114: response to red light	5.25E-06
11	GO:0009644: response to high light intensity	6.42E-06
12	GO:0010600: regulation of auxin biosynthetic process	3.11E-05
13	GO:0010218: response to far red light	4.18E-05
14	GO:0009637: response to blue light	5.47E-05
15	GO:0009409: response to cold	5.48E-05
16	GO:0015979: photosynthesis	6.55E-05
17	GO:0007623: circadian rhythm	8.99E-05
18	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.02E-04
19	GO:0009769: photosynthesis, light harvesting in photosystem II	1.35E-04
20	GO:0010928: regulation of auxin mediated signaling pathway	1.73E-04
21	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	2.06E-04
22	GO:0015812: gamma-aminobutyric acid transport	2.06E-04
23	GO:0006475: internal protein amino acid acetylation	2.06E-04
24	GO:0006474: N-terminal protein amino acid acetylation	2.06E-04
25	GO:0017198: N-terminal peptidyl-serine acetylation	2.06E-04
26	GO:0009723: response to ethylene	2.91E-04
27	GO:0044550: secondary metabolite biosynthetic process	3.88E-04
28	GO:0046856: phosphatidylinositol dephosphorylation	4.23E-04
29	GO:0009416: response to light stimulus	4.34E-04
30	GO:0048255: mRNA stabilization	4.62E-04
31	GO:0015857: uracil transport	4.62E-04
32	GO:1902884: positive regulation of response to oxidative stress	4.62E-04
33	GO:0030259: lipid glycosylation	4.62E-04
34	GO:0050793: regulation of developmental process	4.62E-04
35	GO:0000256: allantoin catabolic process	4.62E-04
36	GO:0035335: peptidyl-tyrosine dephosphorylation	4.62E-04
37	GO:0015720: allantoin transport	4.62E-04
38	GO:0006883: cellular sodium ion homeostasis	4.62E-04
39	GO:0071705: nitrogen compound transport	7.52E-04
40	GO:0010136: ureide catabolic process	7.52E-04
41	GO:1901562: response to paraquat	7.52E-04
42	GO:0045165: cell fate commitment	7.52E-04
43	GO:1902448: positive regulation of shade avoidance	7.52E-04
44	GO:0003333: amino acid transmembrane transport	1.02E-03
45	GO:0006145: purine nucleobase catabolic process	1.07E-03
46	GO:1901332: negative regulation of lateral root development	1.07E-03
47	GO:0010017: red or far-red light signaling pathway	1.12E-03
48	GO:1901002: positive regulation of response to salt stress	1.43E-03
49	GO:0015846: polyamine transport	1.43E-03
50	GO:0030104: water homeostasis	1.43E-03
51	GO:0009765: photosynthesis, light harvesting	1.43E-03
52	GO:2000306: positive regulation of photomorphogenesis	1.43E-03
53	GO:0009735: response to cytokinin	1.56E-03
54	GO:0080167: response to karrikin	1.72E-03
55	GO:0016123: xanthophyll biosynthetic process	1.81E-03
56	GO:0009957: epidermal cell fate specification	1.81E-03
57	GO:0045962: positive regulation of development, heterochronic	2.24E-03
58	GO:0000741: karyogamy	2.24E-03
59	GO:0000060: protein import into nucleus, translocation	2.24E-03
60	GO:0002238: response to molecule of fungal origin	2.24E-03
61	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.24E-03
62	GO:0010286: heat acclimation	2.62E-03
63	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.69E-03
64	GO:0010077: maintenance of inflorescence meristem identity	2.69E-03
65	GO:0006351: transcription, DNA-templated	3.08E-03
66	GO:0010196: nonphotochemical quenching	3.16E-03
67	GO:0010044: response to aluminum ion	3.16E-03
68	GO:0032880: regulation of protein localization	3.16E-03
69	GO:0010161: red light signaling pathway	3.16E-03
70	GO:0015995: chlorophyll biosynthetic process	3.45E-03
71	GO:0010078: maintenance of root meristem identity	3.67E-03
72	GO:0009704: de-etiolation	3.67E-03
73	GO:0009827: plant-type cell wall modification	4.20E-03
74	GO:0006972: hyperosmotic response	4.20E-03
75	GO:0010099: regulation of photomorphogenesis	4.20E-03
76	GO:0006355: regulation of transcription, DNA-templated	4.31E-03
77	GO:0010206: photosystem II repair	4.75E-03
78	GO:0034765: regulation of ion transmembrane transport	4.75E-03
79	GO:0090333: regulation of stomatal closure	4.75E-03
80	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.32E-03
81	GO:0030042: actin filament depolymerization	5.32E-03
82	GO:0009970: cellular response to sulfate starvation	5.93E-03
83	GO:0055062: phosphate ion homeostasis	5.93E-03
84	GO:0006535: cysteine biosynthetic process from serine	5.93E-03
85	GO:0009688: abscisic acid biosynthetic process	5.93E-03
86	GO:0009641: shade avoidance	5.93E-03
87	GO:0010162: seed dormancy process	5.93E-03
88	GO:0008643: carbohydrate transport	6.74E-03
89	GO:0016925: protein sumoylation	7.20E-03
90	GO:0000165: MAPK cascade	7.55E-03
91	GO:0050826: response to freezing	7.87E-03
92	GO:0018107: peptidyl-threonine phosphorylation	7.87E-03
93	GO:0009718: anthocyanin-containing compound biosynthetic process	7.87E-03
94	GO:0009767: photosynthetic electron transport chain	7.87E-03
95	GO:0009585: red, far-red light phototransduction	8.40E-03
96	GO:0010207: photosystem II assembly	8.56E-03
97	GO:0007015: actin filament organization	8.56E-03
98	GO:0009266: response to temperature stimulus	8.56E-03
99	GO:0019853: L-ascorbic acid biosynthetic process	9.27E-03
100	GO:0090351: seedling development	9.27E-03
101	GO:0019344: cysteine biosynthetic process	1.08E-02
102	GO:0010026: trichome differentiation	1.15E-02
103	GO:0048511: rhythmic process	1.23E-02
104	GO:0010431: seed maturation	1.23E-02
105	GO:0009269: response to desiccation	1.23E-02
106	GO:0009693: ethylene biosynthetic process	1.40E-02
107	GO:0071215: cellular response to abscisic acid stimulus	1.40E-02
108	GO:0009408: response to heat	1.40E-02
109	GO:0006012: galactose metabolic process	1.40E-02
110	GO:0045492: xylan biosynthetic process	1.48E-02
111	GO:0016117: carotenoid biosynthetic process	1.57E-02
112	GO:0010197: polar nucleus fusion	1.75E-02
113	GO:0010182: sugar mediated signaling pathway	1.75E-02
114	GO:0006814: sodium ion transport	1.84E-02
115	GO:0009651: response to salt stress	1.87E-02
116	GO:0030163: protein catabolic process	2.23E-02
117	GO:1901657: glycosyl compound metabolic process	2.23E-02
118	GO:0019760: glucosinolate metabolic process	2.33E-02
119	GO:0009739: response to gibberellin	2.33E-02
120	GO:0055114: oxidation-reduction process	2.49E-02
121	GO:0009911: positive regulation of flower development	2.64E-02
122	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.75E-02
123	GO:0048573: photoperiodism, flowering	2.97E-02
124	GO:0048481: plant ovule development	3.19E-02
125	GO:0000160: phosphorelay signal transduction system	3.31E-02
126	GO:0009813: flavonoid biosynthetic process	3.31E-02
127	GO:0006970: response to osmotic stress	3.46E-02
128	GO:0010043: response to zinc ion	3.54E-02
129	GO:0007568: aging	3.54E-02
130	GO:0010200: response to chitin	4.12E-02
131	GO:0016567: protein ubiquitination	4.18E-02
132	GO:0009640: photomorphogenesis	4.52E-02
133	GO:0051707: response to other organism	4.52E-02
134	GO:0045892: negative regulation of transcription, DNA-templated	4.83E-02
135	GO:0009965: leaf morphogenesis	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0004567: beta-mannosidase activity	0.00E+00
2	GO:0008685: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity	0.00E+00
3	GO:0080082: esculin beta-glucosidase activity	0.00E+00
4	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
5	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
6	GO:0050511: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity	0.00E+00
7	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
8	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
9	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
10	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
11	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
12	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
13	GO:0031409: pigment binding	1.26E-12
14	GO:0016168: chlorophyll binding	4.23E-10
15	GO:1990190: peptide-glutamate-N-acetyltransferase activity	2.06E-04
16	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	2.06E-04
17	GO:0005244: voltage-gated ion channel activity	2.06E-04
18	GO:0080079: cellobiose glucosidase activity	2.06E-04
19	GO:0017091: AU-rich element binding	2.06E-04
20	GO:1990189: peptide-serine-N-acetyltransferase activity	2.06E-04
21	GO:0016314: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity	4.62E-04
22	GO:0015180: L-alanine transmembrane transporter activity	4.62E-04
23	GO:0080045: quercetin 3'-O-glucosyltransferase activity	4.62E-04
24	GO:0005274: allantoin uptake transmembrane transporter activity	4.62E-04
25	GO:0004848: ureidoglycolate hydrolase activity	7.52E-04
26	GO:0019948: SUMO activating enzyme activity	7.52E-04
27	GO:0015181: arginine transmembrane transporter activity	1.07E-03
28	GO:0015203: polyamine transmembrane transporter activity	1.07E-03
29	GO:0052866: phosphatidylinositol phosphate phosphatase activity	1.07E-03
30	GO:0009001: serine O-acetyltransferase activity	1.07E-03
31	GO:0015189: L-lysine transmembrane transporter activity	1.07E-03
32	GO:0005515: protein binding	1.15E-03
33	GO:0046872: metal ion binding	1.19E-03
34	GO:0005313: L-glutamate transmembrane transporter activity	1.43E-03
35	GO:0015210: uracil transmembrane transporter activity	1.43E-03
36	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.81E-03
37	GO:0080046: quercetin 4'-O-glucosyltransferase activity	2.24E-03
38	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.55E-03
39	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.56E-03
40	GO:0070300: phosphatidic acid binding	2.69E-03
41	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.78E-03
42	GO:0016621: cinnamoyl-CoA reductase activity	3.16E-03
43	GO:0019825: oxygen binding	3.40E-03
44	GO:0015297: antiporter activity	3.51E-03
45	GO:0004033: aldo-keto reductase (NADP) activity	3.67E-03
46	GO:0004869: cysteine-type endopeptidase inhibitor activity	3.67E-03
47	GO:0004525: ribonuclease III activity	3.67E-03
48	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	4.20E-03
49	GO:0005267: potassium channel activity	4.20E-03
50	GO:0071949: FAD binding	4.75E-03
51	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.75E-03
52	GO:0000989: transcription factor activity, transcription factor binding	4.75E-03
53	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.75E-03
54	GO:0015174: basic amino acid transmembrane transporter activity	5.32E-03
55	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	5.93E-03
56	GO:0005506: iron ion binding	6.13E-03
57	GO:0004177: aminopeptidase activity	6.55E-03
58	GO:0047372: acylglycerol lipase activity	6.55E-03
59	GO:0015293: symporter activity	7.00E-03
60	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	7.20E-03
61	GO:0004565: beta-galactosidase activity	7.87E-03
62	GO:0008081: phosphoric diester hydrolase activity	7.87E-03
63	GO:0004022: alcohol dehydrogenase (NAD) activity	7.87E-03
64	GO:0005315: inorganic phosphate transmembrane transporter activity	7.87E-03
65	GO:0031072: heat shock protein binding	7.87E-03
66	GO:0004497: monooxygenase activity	8.52E-03
67	GO:0003712: transcription cofactor activity	9.27E-03
68	GO:0003677: DNA binding	9.80E-03
69	GO:0004725: protein tyrosine phosphatase activity	1.00E-02
70	GO:0008134: transcription factor binding	1.08E-02
71	GO:0004707: MAP kinase activity	1.23E-02
72	GO:0020037: heme binding	1.39E-02
73	GO:0008514: organic anion transmembrane transporter activity	1.48E-02
74	GO:0008080: N-acetyltransferase activity	1.75E-02
75	GO:0050662: coenzyme binding	1.84E-02
76	GO:0005351: sugar:proton symporter activity	2.03E-02
77	GO:0000156: phosphorelay response regulator activity	2.23E-02
78	GO:0008237: metallopeptidase activity	2.43E-02
79	GO:0003824: catalytic activity	2.47E-02
80	GO:0008270: zinc ion binding	2.93E-02
81	GO:0102483: scopolin beta-glucosidase activity	2.97E-02
82	GO:0008236: serine-type peptidase activity	3.08E-02
83	GO:0008168: methyltransferase activity	3.10E-02
84	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.42E-02
85	GO:0050897: cobalt ion binding	3.54E-02
86	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.78E-02
87	GO:0008233: peptidase activity	3.91E-02
88	GO:0008422: beta-glucosidase activity	4.02E-02
89	GO:0035091: phosphatidylinositol binding	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0009522: photosystem I	5.71E-13
2	GO:0030076: light-harvesting complex	9.80E-11
3	GO:0010287: plastoglobule	5.00E-09
4	GO:0009579: thylakoid	2.32E-07
5	GO:0009535: chloroplast thylakoid membrane	2.60E-07
6	GO:0009534: chloroplast thylakoid	2.54E-06
7	GO:0009523: photosystem II	8.00E-06
8	GO:0009941: chloroplast envelope	1.33E-05
9	GO:0009517: PSII associated light-harvesting complex II	3.11E-05
10	GO:0009783: photosystem II antenna complex	2.06E-04
11	GO:0031415: NatA complex	4.62E-04
12	GO:0042651: thylakoid membrane	9.35E-04
13	GO:0016020: membrane	1.24E-03
14	GO:0032586: protein storage vacuole membrane	1.43E-03
15	GO:0009898: cytoplasmic side of plasma membrane	1.43E-03
16	GO:0009507: chloroplast	2.27E-03
17	GO:0009533: chloroplast stromal thylakoid	3.16E-03
18	GO:0016021: integral component of membrane	3.90E-03
19	GO:0000326: protein storage vacuole	4.20E-03
20	GO:0010494: cytoplasmic stress granule	4.75E-03
21	GO:0015629: actin cytoskeleton	1.40E-02
22	GO:0000932: P-body	2.64E-02
23	GO:0000151: ubiquitin ligase complex	3.19E-02
24	GO:0019005: SCF ubiquitin ligase complex	3.19E-02
25	GO:0031969: chloroplast membrane	3.98E-02
26	GO:0031977: thylakoid lumen	4.27E-02
27	GO:0005773: vacuole	4.38E-02
28	GO:0005829: cytosol	4.64E-02