Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G64460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042820: vitamin B6 catabolic process0.00E+00
2GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
3GO:2001294: malonyl-CoA catabolic process0.00E+00
4GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
5GO:0042493: response to drug0.00E+00
6GO:0006066: alcohol metabolic process0.00E+00
7GO:0045176: apical protein localization0.00E+00
8GO:0033494: ferulate metabolic process0.00E+00
9GO:0016553: base conversion or substitution editing0.00E+00
10GO:0061635: regulation of protein complex stability0.00E+00
11GO:0015805: S-adenosyl-L-methionine transport0.00E+00
12GO:0042821: pyridoxal biosynthetic process0.00E+00
13GO:0015979: photosynthesis1.24E-12
14GO:0015976: carbon utilization6.41E-07
15GO:0009773: photosynthetic electron transport in photosystem I1.21E-06
16GO:0042254: ribosome biogenesis2.78E-06
17GO:1902326: positive regulation of chlorophyll biosynthetic process5.51E-06
18GO:0018298: protein-chromophore linkage1.02E-05
19GO:0032544: plastid translation1.66E-05
20GO:0009735: response to cytokinin1.76E-05
21GO:0042335: cuticle development2.42E-05
22GO:0006810: transport5.48E-05
23GO:0010037: response to carbon dioxide7.62E-05
24GO:2000122: negative regulation of stomatal complex development7.62E-05
25GO:0046520: sphingoid biosynthetic process3.50E-04
26GO:0071277: cellular response to calcium ion3.50E-04
27GO:0000481: maturation of 5S rRNA3.50E-04
28GO:0033481: galacturonate biosynthetic process3.50E-04
29GO:0042371: vitamin K biosynthetic process3.50E-04
30GO:0034337: RNA folding3.50E-04
31GO:0071588: hydrogen peroxide mediated signaling pathway3.50E-04
32GO:0006427: histidyl-tRNA aminoacylation3.50E-04
33GO:0009443: pyridoxal 5'-phosphate salvage3.50E-04
34GO:0043489: RNA stabilization3.50E-04
35GO:0006412: translation5.30E-04
36GO:0009416: response to light stimulus5.62E-04
37GO:0010024: phytochromobilin biosynthetic process7.62E-04
38GO:0010115: regulation of abscisic acid biosynthetic process7.62E-04
39GO:0000038: very long-chain fatty acid metabolic process8.86E-04
40GO:0009658: chloroplast organization8.98E-04
41GO:0055085: transmembrane transport9.51E-04
42GO:0010411: xyloglucan metabolic process1.02E-03
43GO:0006006: glucose metabolic process1.14E-03
44GO:0006788: heme oxidation1.23E-03
45GO:0006753: nucleoside phosphate metabolic process1.23E-03
46GO:0015840: urea transport1.23E-03
47GO:0071492: cellular response to UV-A1.23E-03
48GO:0006518: peptide metabolic process1.23E-03
49GO:0010143: cutin biosynthetic process1.29E-03
50GO:0006833: water transport1.60E-03
51GO:0009409: response to cold1.72E-03
52GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.78E-03
53GO:0009152: purine ribonucleotide biosynthetic process1.78E-03
54GO:0046653: tetrahydrofolate metabolic process1.78E-03
55GO:0009800: cinnamic acid biosynthetic process1.78E-03
56GO:0009650: UV protection1.78E-03
57GO:0009768: photosynthesis, light harvesting in photosystem I1.96E-03
58GO:0042546: cell wall biogenesis2.26E-03
59GO:0071486: cellular response to high light intensity2.38E-03
60GO:0009765: photosynthesis, light harvesting2.38E-03
61GO:0045727: positive regulation of translation2.38E-03
62GO:0009644: response to high light intensity2.38E-03
63GO:0015994: chlorophyll metabolic process2.38E-03
64GO:0031122: cytoplasmic microtubule organization2.38E-03
65GO:0006564: L-serine biosynthetic process3.05E-03
66GO:0031365: N-terminal protein amino acid modification3.05E-03
67GO:0006461: protein complex assembly3.05E-03
68GO:0000413: protein peptidyl-prolyl isomerization3.27E-03
69GO:0006559: L-phenylalanine catabolic process3.76E-03
70GO:0006596: polyamine biosynthetic process3.76E-03
71GO:0018258: protein O-linked glycosylation via hydroxyproline3.76E-03
72GO:0006561: proline biosynthetic process3.76E-03
73GO:0048759: xylem vessel member cell differentiation3.76E-03
74GO:0010405: arabinogalactan protein metabolic process3.76E-03
75GO:0048827: phyllome development3.76E-03
76GO:0042549: photosystem II stabilization3.76E-03
77GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.76E-03
78GO:0009913: epidermal cell differentiation3.76E-03
79GO:0016554: cytidine to uridine editing3.76E-03
80GO:0010190: cytochrome b6f complex assembly3.76E-03
81GO:0006694: steroid biosynthetic process4.54E-03
82GO:0010019: chloroplast-nucleus signaling pathway4.54E-03
83GO:0042372: phylloquinone biosynthetic process4.54E-03
84GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.54E-03
85GO:0009645: response to low light intensity stimulus5.36E-03
86GO:0010444: guard mother cell differentiation5.36E-03
87GO:0050829: defense response to Gram-negative bacterium5.36E-03
88GO:0006400: tRNA modification5.36E-03
89GO:0009395: phospholipid catabolic process5.36E-03
90GO:0030497: fatty acid elongation5.36E-03
91GO:0010196: nonphotochemical quenching5.36E-03
92GO:0015937: coenzyme A biosynthetic process5.36E-03
93GO:0046620: regulation of organ growth6.22E-03
94GO:0009704: de-etiolation6.22E-03
95GO:0032508: DNA duplex unwinding6.22E-03
96GO:0030091: protein repair6.22E-03
97GO:0008610: lipid biosynthetic process6.22E-03
98GO:0009657: plastid organization7.14E-03
99GO:0009808: lignin metabolic process7.14E-03
100GO:0009932: cell tip growth7.14E-03
101GO:0045454: cell redox homeostasis7.32E-03
102GO:0000373: Group II intron splicing8.10E-03
103GO:0009051: pentose-phosphate shunt, oxidative branch8.10E-03
104GO:0006098: pentose-phosphate shunt8.10E-03
105GO:0090333: regulation of stomatal closure8.10E-03
106GO:0071555: cell wall organization8.13E-03
107GO:0006869: lipid transport8.42E-03
108GO:0000160: phosphorelay signal transduction system8.66E-03
109GO:0006633: fatty acid biosynthetic process8.79E-03
110GO:0010205: photoinhibition9.10E-03
111GO:1900865: chloroplast RNA modification9.10E-03
112GO:0009631: cold acclimation9.53E-03
113GO:0010119: regulation of stomatal movement9.53E-03
114GO:0016042: lipid catabolic process9.63E-03
115GO:0045490: pectin catabolic process9.92E-03
116GO:0019538: protein metabolic process1.01E-02
117GO:0009688: abscisic acid biosynthetic process1.01E-02
118GO:0043069: negative regulation of programmed cell death1.01E-02
119GO:0048829: root cap development1.01E-02
120GO:0006949: syncytium formation1.01E-02
121GO:0034599: cellular response to oxidative stress1.09E-02
122GO:0009750: response to fructose1.12E-02
123GO:0019684: photosynthesis, light reaction1.12E-02
124GO:0009089: lysine biosynthetic process via diaminopimelate1.12E-02
125GO:0009073: aromatic amino acid family biosynthetic process1.12E-02
126GO:0043085: positive regulation of catalytic activity1.12E-02
127GO:0006839: mitochondrial transport1.19E-02
128GO:0016024: CDP-diacylglycerol biosynthetic process1.24E-02
129GO:0055114: oxidation-reduction process1.25E-02
130GO:0010628: positive regulation of gene expression1.35E-02
131GO:0010229: inflorescence development1.35E-02
132GO:0009926: auxin polar transport1.35E-02
133GO:0009725: response to hormone1.35E-02
134GO:0006094: gluconeogenesis1.35E-02
135GO:0019253: reductive pentose-phosphate cycle1.48E-02
136GO:0010540: basipetal auxin transport1.48E-02
137GO:0010207: photosystem II assembly1.48E-02
138GO:0010020: chloroplast fission1.48E-02
139GO:0009225: nucleotide-sugar metabolic process1.60E-02
140GO:0009826: unidimensional cell growth1.65E-02
141GO:0006636: unsaturated fatty acid biosynthetic process1.73E-02
142GO:0019762: glucosinolate catabolic process1.73E-02
143GO:0010025: wax biosynthetic process1.73E-02
144GO:0009736: cytokinin-activated signaling pathway1.83E-02
145GO:0006487: protein N-linked glycosylation1.86E-02
146GO:0000027: ribosomal large subunit assembly1.86E-02
147GO:0051603: proteolysis involved in cellular protein catabolic process1.89E-02
148GO:0007017: microtubule-based process2.00E-02
149GO:0003333: amino acid transmembrane transport2.13E-02
150GO:0016998: cell wall macromolecule catabolic process2.13E-02
151GO:0061077: chaperone-mediated protein folding2.13E-02
152GO:0031408: oxylipin biosynthetic process2.13E-02
153GO:0006096: glycolytic process2.16E-02
154GO:0030245: cellulose catabolic process2.28E-02
155GO:0009414: response to water deprivation2.30E-02
156GO:0009411: response to UV2.42E-02
157GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.42E-02
158GO:0009611: response to wounding2.46E-02
159GO:0042545: cell wall modification2.53E-02
160GO:0042127: regulation of cell proliferation2.57E-02
161GO:0019722: calcium-mediated signaling2.57E-02
162GO:0034220: ion transmembrane transport2.88E-02
163GO:0010087: phloem or xylem histogenesis2.88E-02
164GO:0006662: glycerol ether metabolic process3.04E-02
165GO:0010182: sugar mediated signaling pathway3.04E-02
166GO:0048825: cotyledon development3.36E-02
167GO:0000302: response to reactive oxygen species3.53E-02
168GO:0016132: brassinosteroid biosynthetic process3.53E-02
169GO:0071554: cell wall organization or biogenesis3.53E-02
170GO:0009630: gravitropism3.70E-02
171GO:1901657: glycosyl compound metabolic process3.87E-02
172GO:0009828: plant-type cell wall loosening4.04E-02
173GO:0007267: cell-cell signaling4.22E-02
174GO:0009911: positive regulation of flower development4.58E-02
175GO:0010027: thylakoid membrane organization4.58E-02
176GO:0001666: response to hypoxia4.58E-02
177GO:0005975: carbohydrate metabolic process4.76E-02
178GO:0042128: nitrate assimilation4.95E-02
RankGO TermAdjusted P value
1GO:0010487: thermospermine synthase activity0.00E+00
2GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
3GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
4GO:0050614: delta24-sterol reductase activity0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0046577: long-chain-alcohol oxidase activity0.00E+00
7GO:0010301: xanthoxin dehydrogenase activity0.00E+00
8GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
9GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
10GO:0019843: rRNA binding1.35E-11
11GO:0016168: chlorophyll binding2.31E-07
12GO:0022891: substrate-specific transmembrane transporter activity1.46E-05
13GO:0016788: hydrolase activity, acting on ester bonds2.71E-05
14GO:0003735: structural constituent of ribosome4.36E-05
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.82E-05
16GO:0043495: protein anchor7.62E-05
17GO:0004089: carbonate dehydratase activity7.71E-05
18GO:0005528: FK506 binding1.52E-04
19GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.88E-04
20GO:0019899: enzyme binding3.02E-04
21GO:0015200: methylammonium transmembrane transporter activity3.50E-04
22GO:0016768: spermine synthase activity3.50E-04
23GO:0000170: sphingosine hydroxylase activity3.50E-04
24GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.50E-04
25GO:0030794: (S)-coclaurine-N-methyltransferase activity3.50E-04
26GO:0010945: CoA pyrophosphatase activity3.50E-04
27GO:0080132: fatty acid alpha-hydroxylase activity3.50E-04
28GO:0008568: microtubule-severing ATPase activity3.50E-04
29GO:0004821: histidine-tRNA ligase activity3.50E-04
30GO:0052689: carboxylic ester hydrolase activity3.59E-04
31GO:0004033: aldo-keto reductase (NADP) activity3.80E-04
32GO:0016762: xyloglucan:xyloglucosyl transferase activity5.20E-04
33GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.62E-04
34GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.62E-04
35GO:0047746: chlorophyllase activity7.62E-04
36GO:0004617: phosphoglycerate dehydrogenase activity7.62E-04
37GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity7.62E-04
38GO:0042284: sphingolipid delta-4 desaturase activity7.62E-04
39GO:0016798: hydrolase activity, acting on glycosyl bonds1.02E-03
40GO:0030267: glyoxylate reductase (NADP) activity1.23E-03
41GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.23E-03
42GO:0070402: NADPH binding1.23E-03
43GO:0008864: formyltetrahydrofolate deformylase activity1.23E-03
44GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.23E-03
45GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.23E-03
46GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.23E-03
47GO:0050734: hydroxycinnamoyltransferase activity1.23E-03
48GO:0045548: phenylalanine ammonia-lyase activity1.23E-03
49GO:0008266: poly(U) RNA binding1.29E-03
50GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.60E-03
51GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.60E-03
52GO:0031409: pigment binding1.60E-03
53GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.60E-03
54GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.78E-03
55GO:0001872: (1->3)-beta-D-glucan binding1.78E-03
56GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity1.78E-03
57GO:0004871: signal transducer activity1.95E-03
58GO:0050378: UDP-glucuronate 4-epimerase activity2.38E-03
59GO:0004392: heme oxygenase (decyclizing) activity2.38E-03
60GO:0015204: urea transmembrane transporter activity2.38E-03
61GO:0004345: glucose-6-phosphate dehydrogenase activity2.38E-03
62GO:0010328: auxin influx transmembrane transporter activity2.38E-03
63GO:0042802: identical protein binding2.97E-03
64GO:0009922: fatty acid elongase activity3.05E-03
65GO:0003824: catalytic activity3.24E-03
66GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.76E-03
67GO:0016688: L-ascorbate peroxidase activity3.76E-03
68GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.76E-03
69GO:0008519: ammonium transmembrane transporter activity3.76E-03
70GO:1990714: hydroxyproline O-galactosyltransferase activity3.76E-03
71GO:0004332: fructose-bisphosphate aldolase activity3.76E-03
72GO:0000210: NAD+ diphosphatase activity3.76E-03
73GO:0004130: cytochrome-c peroxidase activity3.76E-03
74GO:0016208: AMP binding3.76E-03
75GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.54E-03
76GO:0051920: peroxiredoxin activity4.54E-03
77GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.54E-03
78GO:0051753: mannan synthase activity4.54E-03
79GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.54E-03
80GO:0030599: pectinesterase activity4.57E-03
81GO:0000156: phosphorelay response regulator activity4.96E-03
82GO:0016746: transferase activity, transferring acyl groups5.12E-03
83GO:0008235: metalloexopeptidase activity5.36E-03
84GO:0016722: oxidoreductase activity, oxidizing metal ions5.61E-03
85GO:0016209: antioxidant activity6.22E-03
86GO:0015250: water channel activity6.30E-03
87GO:0005509: calcium ion binding6.94E-03
88GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.14E-03
89GO:0102483: scopolin beta-glucosidase activity7.43E-03
90GO:0047617: acyl-CoA hydrolase activity9.10E-03
91GO:0008047: enzyme activator activity1.01E-02
92GO:0003993: acid phosphatase activity1.09E-02
93GO:0008794: arsenate reductase (glutaredoxin) activity1.12E-02
94GO:0009055: electron carrier activity1.12E-02
95GO:0004177: aminopeptidase activity1.12E-02
96GO:0015386: potassium:proton antiporter activity1.12E-02
97GO:0008422: beta-glucosidase activity1.14E-02
98GO:0050661: NADP binding1.19E-02
99GO:0004022: alcohol dehydrogenase (NAD) activity1.35E-02
100GO:0004185: serine-type carboxypeptidase activity1.35E-02
101GO:0004565: beta-galactosidase activity1.35E-02
102GO:0051537: 2 iron, 2 sulfur cluster binding1.46E-02
103GO:0015293: symporter activity1.52E-02
104GO:0008146: sulfotransferase activity1.60E-02
105GO:0051287: NAD binding1.64E-02
106GO:0008289: lipid binding1.66E-02
107GO:0004857: enzyme inhibitor activity1.86E-02
108GO:0043424: protein histidine kinase binding2.00E-02
109GO:0015079: potassium ion transmembrane transporter activity2.00E-02
110GO:0045330: aspartyl esterase activity2.02E-02
111GO:0030570: pectate lyase activity2.42E-02
112GO:0008810: cellulase activity2.42E-02
113GO:0015035: protein disulfide oxidoreductase activity2.68E-02
114GO:0047134: protein-disulfide reductase activity2.72E-02
115GO:0004791: thioredoxin-disulfide reductase activity3.20E-02
116GO:0050662: coenzyme binding3.20E-02
117GO:0016787: hydrolase activity3.46E-02
118GO:0016491: oxidoreductase activity3.78E-02
119GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.87E-02
120GO:0016791: phosphatase activity4.04E-02
121GO:0005200: structural constituent of cytoskeleton4.22E-02
122GO:0016597: amino acid binding4.40E-02
123GO:0016413: O-acetyltransferase activity4.40E-02
124GO:0008375: acetylglucosaminyltransferase activity4.95E-02
125GO:0009931: calcium-dependent protein serine/threonine kinase activity4.95E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009507: chloroplast1.08E-34
3GO:0009535: chloroplast thylakoid membrane1.11E-27
4GO:0009579: thylakoid2.27E-20
5GO:0009570: chloroplast stroma2.37E-20
6GO:0009941: chloroplast envelope1.88E-19
7GO:0009543: chloroplast thylakoid lumen5.16E-16
8GO:0031977: thylakoid lumen8.08E-11
9GO:0009534: chloroplast thylakoid9.26E-11
10GO:0009654: photosystem II oxygen evolving complex1.99E-07
11GO:0048046: apoplast3.82E-07
12GO:0009523: photosystem II1.59E-06
13GO:0019898: extrinsic component of membrane1.59E-06
14GO:0005840: ribosome2.19E-06
15GO:0005618: cell wall3.45E-06
16GO:0042651: thylakoid membrane8.04E-06
17GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.29E-05
18GO:0030095: chloroplast photosystem II9.31E-05
19GO:0046658: anchored component of plasma membrane1.25E-04
20GO:0009782: photosystem I antenna complex3.50E-04
21GO:0016020: membrane8.99E-04
22GO:0031969: chloroplast membrane1.31E-03
23GO:0009505: plant-type cell wall1.43E-03
24GO:0030076: light-harvesting complex1.44E-03
25GO:0031225: anchored component of membrane1.49E-03
26GO:0015630: microtubule cytoskeleton1.78E-03
27GO:0009533: chloroplast stromal thylakoid5.36E-03
28GO:0042807: central vacuole5.36E-03
29GO:0005778: peroxisomal membrane5.61E-03
30GO:0010319: stromule5.61E-03
31GO:0010287: plastoglobule6.13E-03
32GO:0005576: extracellular region6.15E-03
33GO:0030529: intracellular ribonucleoprotein complex6.30E-03
34GO:0000326: protein storage vacuole7.14E-03
35GO:0008180: COP9 signalosome8.10E-03
36GO:0015934: large ribosomal subunit9.53E-03
37GO:0032040: small-subunit processome1.24E-02
38GO:0031012: extracellular matrix1.35E-02
39GO:0000312: plastid small ribosomal subunit1.48E-02
40GO:0009532: plastid stroma2.13E-02
41GO:0015935: small ribosomal subunit2.13E-02
42GO:0005874: microtubule2.17E-02
43GO:0005770: late endosome3.04E-02
44GO:0009522: photosystem I3.20E-02
45GO:0032580: Golgi cisterna membrane4.04E-02
46GO:0009295: nucleoid4.22E-02
47GO:0016021: integral component of membrane4.28E-02
Gene type



Gene DE type