co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G64330

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0045014: negative regulation of transcription by glucose	0.00E+00
4	GO:0051513: regulation of monopolar cell growth	1.06E-05
5	GO:0006106: fumarate metabolic process	1.58E-04
6	GO:0010028: xanthophyll cycle	1.58E-04
7	GO:0010206: photosystem II repair	1.77E-04
8	GO:0015995: chlorophyll biosynthetic process	2.37E-04
9	GO:0009733: response to auxin	2.58E-04
10	GO:0009773: photosynthetic electron transport in photosystem I	2.91E-04
11	GO:0016024: CDP-diacylglycerol biosynthetic process	3.35E-04
12	GO:0010541: acropetal auxin transport	3.60E-04
13	GO:0001736: establishment of planar polarity	3.60E-04
14	GO:0016122: xanthophyll metabolic process	3.60E-04
15	GO:0006898: receptor-mediated endocytosis	3.60E-04
16	GO:0009926: auxin polar transport	5.17E-04
17	GO:0090391: granum assembly	5.89E-04
18	GO:0016045: detection of bacterium	5.89E-04
19	GO:0010359: regulation of anion channel activity	5.89E-04
20	GO:0010160: formation of animal organ boundary	5.89E-04
21	GO:0009734: auxin-activated signaling pathway	6.32E-04
22	GO:0007017: microtubule-based process	6.55E-04
23	GO:0009664: plant-type cell wall organization	6.88E-04
24	GO:0009800: cinnamic acid biosynthetic process	8.43E-04
25	GO:1901332: negative regulation of lateral root development	8.43E-04
26	GO:0080170: hydrogen peroxide transmembrane transport	8.43E-04
27	GO:0043481: anthocyanin accumulation in tissues in response to UV light	8.43E-04
28	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	8.43E-04
29	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.52E-04
30	GO:0048443: stamen development	9.22E-04
31	GO:0034220: ion transmembrane transport	1.07E-03
32	GO:0042335: cuticle development	1.07E-03
33	GO:0030104: water homeostasis	1.12E-03
34	GO:0010109: regulation of photosynthesis	1.12E-03
35	GO:0015994: chlorophyll metabolic process	1.12E-03
36	GO:0009958: positive gravitropism	1.15E-03
37	GO:0010305: leaf vascular tissue pattern formation	1.15E-03
38	GO:0009828: plant-type cell wall loosening	1.71E-03
39	GO:0009913: epidermal cell differentiation	1.74E-03
40	GO:0006655: phosphatidylglycerol biosynthetic process	1.74E-03
41	GO:0060918: auxin transport	1.74E-03
42	GO:0006751: glutathione catabolic process	1.74E-03
43	GO:0006559: L-phenylalanine catabolic process	1.74E-03
44	GO:0010027: thylakoid membrane organization	2.03E-03
45	GO:0009942: longitudinal axis specification	2.09E-03
46	GO:1900057: positive regulation of leaf senescence	2.45E-03
47	GO:1900056: negative regulation of leaf senescence	2.45E-03
48	GO:0010196: nonphotochemical quenching	2.45E-03
49	GO:0010311: lateral root formation	2.77E-03
50	GO:0006605: protein targeting	2.84E-03
51	GO:0046620: regulation of organ growth	2.84E-03
52	GO:0007389: pattern specification process	3.25E-03
53	GO:0048589: developmental growth	3.67E-03
54	GO:0009245: lipid A biosynthetic process	3.67E-03
55	GO:0030001: metal ion transport	3.80E-03
56	GO:0010205: photoinhibition	4.12E-03
57	GO:0048829: root cap development	4.58E-03
58	GO:0006949: syncytium formation	4.58E-03
59	GO:1903507: negative regulation of nucleic acid-templated transcription	5.05E-03
60	GO:0048765: root hair cell differentiation	5.05E-03
61	GO:0009684: indoleacetic acid biosynthetic process	5.05E-03
62	GO:0046856: phosphatidylinositol dephosphorylation	5.05E-03
63	GO:0010015: root morphogenesis	5.05E-03
64	GO:0052544: defense response by callose deposition in cell wall	5.05E-03
65	GO:0010152: pollen maturation	5.55E-03
66	GO:0008361: regulation of cell size	5.55E-03
67	GO:0030048: actin filament-based movement	6.06E-03
68	GO:0010628: positive regulation of gene expression	6.06E-03
69	GO:0006108: malate metabolic process	6.06E-03
70	GO:0006094: gluconeogenesis	6.06E-03
71	GO:0010588: cotyledon vascular tissue pattern formation	6.06E-03
72	GO:0010102: lateral root morphogenesis	6.06E-03
73	GO:0015979: photosynthesis	6.24E-03
74	GO:0010207: photosystem II assembly	6.59E-03
75	GO:0010540: basipetal auxin transport	6.59E-03
76	GO:0010143: cutin biosynthetic process	6.59E-03
77	GO:0071732: cellular response to nitric oxide	7.13E-03
78	GO:0010030: positive regulation of seed germination	7.13E-03
79	GO:0006636: unsaturated fatty acid biosynthetic process	7.69E-03
80	GO:0006833: water transport	7.69E-03
81	GO:0009624: response to nematode	8.21E-03
82	GO:0051017: actin filament bundle assembly	8.27E-03
83	GO:2000377: regulation of reactive oxygen species metabolic process	8.27E-03
84	GO:0006825: copper ion transport	8.86E-03
85	GO:0003333: amino acid transmembrane transport	9.46E-03
86	GO:0048511: rhythmic process	9.46E-03
87	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.01E-02
88	GO:0071369: cellular response to ethylene stimulus	1.07E-02
89	GO:0009306: protein secretion	1.14E-02
90	GO:0006284: base-excision repair	1.14E-02
91	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.20E-02
92	GO:0080022: primary root development	1.27E-02
93	GO:0010087: phloem or xylem histogenesis	1.27E-02
94	GO:0042631: cellular response to water deprivation	1.27E-02
95	GO:0006633: fatty acid biosynthetic process	1.30E-02
96	GO:0071472: cellular response to salt stress	1.34E-02
97	GO:0042752: regulation of circadian rhythm	1.41E-02
98	GO:0045490: pectin catabolic process	1.42E-02
99	GO:0048825: cotyledon development	1.48E-02
100	GO:0000302: response to reactive oxygen species	1.56E-02
101	GO:0009739: response to gibberellin	1.59E-02
102	GO:0010583: response to cyclopentenone	1.63E-02
103	GO:0016032: viral process	1.63E-02
104	GO:0030163: protein catabolic process	1.71E-02
105	GO:0071281: cellular response to iron ion	1.71E-02
106	GO:0009639: response to red or far red light	1.78E-02
107	GO:0010252: auxin homeostasis	1.78E-02
108	GO:0009416: response to light stimulus	1.79E-02
109	GO:0009826: unidimensional cell growth	2.13E-02
110	GO:0009627: systemic acquired resistance	2.19E-02
111	GO:0042128: nitrate assimilation	2.19E-02
112	GO:0005975: carbohydrate metabolic process	2.28E-02
113	GO:0055085: transmembrane transport	2.42E-02
114	GO:0010218: response to far red light	2.62E-02
115	GO:0048527: lateral root development	2.71E-02
116	GO:0009631: cold acclimation	2.71E-02
117	GO:0080167: response to karrikin	2.74E-02
118	GO:0006865: amino acid transport	2.80E-02
119	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.83E-02
120	GO:0016051: carbohydrate biosynthetic process	2.89E-02
121	GO:0009637: response to blue light	2.89E-02
122	GO:0034599: cellular response to oxidative stress	2.98E-02
123	GO:0006099: tricarboxylic acid cycle	2.98E-02
124	GO:0006631: fatty acid metabolic process	3.27E-02
125	GO:0045892: negative regulation of transcription, DNA-templated	3.33E-02
126	GO:0010114: response to red light	3.46E-02
127	GO:0009640: photomorphogenesis	3.46E-02
128	GO:0006855: drug transmembrane transport	3.86E-02
129	GO:0031347: regulation of defense response	3.96E-02
130	GO:0048364: root development	4.21E-02
131	GO:0006364: rRNA processing	4.28E-02
132	GO:0008152: metabolic process	4.44E-02
133	GO:0006096: glycolytic process	4.82E-02
134	GO:0043086: negative regulation of catalytic activity	4.82E-02
135	GO:0048367: shoot system development	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
5	GO:0016851: magnesium chelatase activity	1.06E-05
6	GO:0010011: auxin binding	1.97E-05
7	GO:0005528: FK506 binding	2.71E-05
8	GO:0004333: fumarate hydratase activity	1.58E-04
9	GO:0045485: omega-6 fatty acid desaturase activity	1.58E-04
10	GO:0003839: gamma-glutamylcyclotransferase activity	3.60E-04
11	GO:0010329: auxin efflux transmembrane transporter activity	3.82E-04
12	GO:0090729: toxin activity	5.89E-04
13	GO:0045548: phenylalanine ammonia-lyase activity	5.89E-04
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.28E-04
15	GO:0030570: pectate lyase activity	8.52E-04
16	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.12E-03
17	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.12E-03
18	GO:0010328: auxin influx transmembrane transporter activity	1.12E-03
19	GO:0008725: DNA-3-methyladenine glycosylase activity	1.41E-03
20	GO:0004040: amidase activity	1.41E-03
21	GO:0016829: lyase activity	1.70E-03
22	GO:0016791: phosphatase activity	1.71E-03
23	GO:0031177: phosphopantetheine binding	1.74E-03
24	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.74E-03
25	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.74E-03
26	GO:0004332: fructose-bisphosphate aldolase activity	1.74E-03
27	GO:0004130: cytochrome-c peroxidase activity	1.74E-03
28	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.74E-03
29	GO:0042578: phosphoric ester hydrolase activity	1.74E-03
30	GO:0005200: structural constituent of cytoskeleton	1.81E-03
31	GO:0015250: water channel activity	2.03E-03
32	GO:0004017: adenylate kinase activity	2.09E-03
33	GO:0000035: acyl binding	2.09E-03
34	GO:0016832: aldehyde-lyase activity	2.09E-03
35	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.84E-03
36	GO:0009672: auxin:proton symporter activity	4.12E-03
37	GO:0015020: glucuronosyltransferase activity	4.58E-03
38	GO:0005515: protein binding	5.02E-03
39	GO:0047372: acylglycerol lipase activity	5.05E-03
40	GO:0008794: arsenate reductase (glutaredoxin) activity	5.05E-03
41	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	5.55E-03
42	GO:0031072: heat shock protein binding	6.06E-03
43	GO:0003774: motor activity	6.59E-03
44	GO:0004650: polygalacturonase activity	7.50E-03
45	GO:0003714: transcription corepressor activity	8.27E-03
46	GO:0016746: transferase activity, transferring acyl groups	8.46E-03
47	GO:0003756: protein disulfide isomerase activity	1.14E-02
48	GO:0008289: lipid binding	1.32E-02
49	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.33E-02
50	GO:0004518: nuclease activity	1.63E-02
51	GO:0051015: actin filament binding	1.71E-02
52	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.81E-02
53	GO:0008375: acetylglucosaminyltransferase activity	2.19E-02
54	GO:0016788: hydrolase activity, acting on ester bonds	2.25E-02
55	GO:0008236: serine-type peptidase activity	2.36E-02
56	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.44E-02
57	GO:0005096: GTPase activator activity	2.53E-02
58	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.71E-02
59	GO:0003993: acid phosphatase activity	2.98E-02
60	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.08E-02
61	GO:0004871: signal transducer activity	3.43E-02
62	GO:0004722: protein serine/threonine phosphatase activity	3.59E-02
63	GO:0051537: 2 iron, 2 sulfur cluster binding	3.66E-02
64	GO:0015293: symporter activity	3.76E-02
65	GO:0016787: hydrolase activity	3.78E-02
66	GO:0003924: GTPase activity	4.03E-02
67	GO:0009055: electron carrier activity	4.32E-02
68	GO:0003777: microtubule motor activity	4.60E-02
69	GO:0015171: amino acid transmembrane transporter activity	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009534: chloroplast thylakoid	2.78E-09
3	GO:0009543: chloroplast thylakoid lumen	3.98E-08
4	GO:0009535: chloroplast thylakoid membrane	2.60E-07
5	GO:0009507: chloroplast	1.55E-06
6	GO:0031977: thylakoid lumen	1.61E-06
7	GO:0010007: magnesium chelatase complex	4.55E-06
8	GO:0009570: chloroplast stroma	4.71E-05
9	GO:0009515: granal stacked thylakoid	1.58E-04
10	GO:0045239: tricarboxylic acid cycle enzyme complex	1.58E-04
11	GO:0043674: columella	1.58E-04
12	GO:0009941: chloroplast envelope	2.14E-04
13	GO:0009579: thylakoid	2.85E-04
14	GO:0030093: chloroplast photosystem I	3.60E-04
15	GO:0015630: microtubule cytoskeleton	8.43E-04
16	GO:0009531: secondary cell wall	8.43E-04
17	GO:0042807: central vacuole	2.45E-03
18	GO:0009986: cell surface	2.45E-03
19	GO:0009533: chloroplast stromal thylakoid	2.45E-03
20	GO:0008180: COP9 signalosome	3.67E-03
21	GO:0045298: tubulin complex	3.67E-03
22	GO:0016459: myosin complex	4.58E-03
23	GO:0016020: membrane	5.01E-03
24	GO:0009508: plastid chromosome	6.06E-03
25	GO:0030095: chloroplast photosystem II	6.59E-03
26	GO:0015629: actin cytoskeleton	1.07E-02
27	GO:0005618: cell wall	1.25E-02
28	GO:0009522: photosystem I	1.41E-02
29	GO:0009505: plant-type cell wall	1.72E-02
30	GO:0009295: nucleoid	1.86E-02
31	GO:0005886: plasma membrane	2.17E-02
32	GO:0019005: SCF ubiquitin ligase complex	2.44E-02
33	GO:0005874: microtubule	2.65E-02
34	GO:0031969: chloroplast membrane	2.74E-02
35	GO:0005856: cytoskeleton	3.76E-02
36	GO:0000502: proteasome complex	4.28E-02
37	GO:0005576: extracellular region	4.61E-02
38	GO:0010008: endosome membrane	4.93E-02