co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010203: response to very low fluence red light stimulus	0.00E+00
2	GO:0010219: regulation of vernalization response	0.00E+00
3	GO:0010378: temperature compensation of the circadian clock	0.00E+00
4	GO:0030644: cellular chloride ion homeostasis	0.00E+00
5	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
6	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
7	GO:0070584: mitochondrion morphogenesis	0.00E+00
8	GO:0071311: cellular response to acetate	0.00E+00
9	GO:0071260: cellular response to mechanical stimulus	0.00E+00
10	GO:0042906: xanthine transport	0.00E+00
11	GO:0009877: nodulation	0.00E+00
12	GO:0009768: photosynthesis, light harvesting in photosystem I	5.68E-10
13	GO:0018298: protein-chromophore linkage	1.94E-09
14	GO:0010218: response to far red light	1.04E-07
15	GO:0007623: circadian rhythm	9.40E-07
16	GO:0009645: response to low light intensity stimulus	2.86E-06
17	GO:0009409: response to cold	3.12E-06
18	GO:0009637: response to blue light	4.45E-06
19	GO:0010114: response to red light	8.54E-06
20	GO:0009644: response to high light intensity	1.04E-05
21	GO:0009416: response to light stimulus	2.21E-05
22	GO:0010600: regulation of auxin biosynthetic process	3.91E-05
23	GO:0000380: alternative mRNA splicing, via spliceosome	6.26E-05
24	GO:0015979: photosynthesis	1.06E-04
25	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.27E-04
26	GO:0008643: carbohydrate transport	1.43E-04
27	GO:0035556: intracellular signal transduction	1.60E-04
28	GO:0009769: photosynthesis, light harvesting in photosystem II	1.67E-04
29	GO:0010161: red light signaling pathway	1.67E-04
30	GO:0009585: red, far-red light phototransduction	2.09E-04
31	GO:0010928: regulation of auxin mediated signaling pathway	2.12E-04
32	GO:0015812: gamma-aminobutyric acid transport	2.36E-04
33	GO:0032958: inositol phosphate biosynthetic process	2.36E-04
34	GO:0006369: termination of RNA polymerase II transcription	2.36E-04
35	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	2.36E-04
36	GO:0034472: snRNA 3'-end processing	2.36E-04
37	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.36E-04
38	GO:0010496: intercellular transport	2.36E-04
39	GO:0010362: negative regulation of anion channel activity by blue light	2.36E-04
40	GO:0080173: male-female gamete recognition during double fertilization	2.36E-04
41	GO:0009638: phototropism	3.78E-04
42	GO:0009737: response to abscisic acid	4.02E-04
43	GO:0006355: regulation of transcription, DNA-templated	4.17E-04
44	GO:1902884: positive regulation of response to oxidative stress	5.24E-04
45	GO:0051170: nuclear import	5.24E-04
46	GO:0015720: allantoin transport	5.24E-04
47	GO:0010155: regulation of proton transport	5.24E-04
48	GO:0006883: cellular sodium ion homeostasis	5.24E-04
49	GO:0090057: root radial pattern formation	5.24E-04
50	GO:0048833: specification of floral organ number	5.24E-04
51	GO:0015857: uracil transport	5.24E-04
52	GO:0000160: phosphorelay signal transduction system	6.04E-04
53	GO:0010119: regulation of stomatal movement	6.81E-04
54	GO:0009414: response to water deprivation	7.06E-04
55	GO:0071230: cellular response to amino acid stimulus	8.52E-04
56	GO:0006598: polyamine catabolic process	8.52E-04
57	GO:0017006: protein-tetrapyrrole linkage	8.52E-04
58	GO:1901562: response to paraquat	8.52E-04
59	GO:0071705: nitrogen compound transport	8.52E-04
60	GO:0090153: regulation of sphingolipid biosynthetic process	8.52E-04
61	GO:1902448: positive regulation of shade avoidance	8.52E-04
62	GO:0042542: response to hydrogen peroxide	9.97E-04
63	GO:0009640: photomorphogenesis	1.05E-03
64	GO:0006874: cellular calcium ion homeostasis	1.12E-03
65	GO:0030100: regulation of endocytosis	1.21E-03
66	GO:1901332: negative regulation of lateral root development	1.21E-03
67	GO:0006020: inositol metabolic process	1.21E-03
68	GO:1901000: regulation of response to salt stress	1.21E-03
69	GO:0010601: positive regulation of auxin biosynthetic process	1.21E-03
70	GO:0009584: detection of visible light	1.21E-03
71	GO:0044211: CTP salvage	1.21E-03
72	GO:0048511: rhythmic process	1.23E-03
73	GO:0010017: red or far-red light signaling pathway	1.35E-03
74	GO:0044206: UMP salvage	1.62E-03
75	GO:0006646: phosphatidylethanolamine biosynthetic process	1.62E-03
76	GO:0048442: sepal development	1.62E-03
77	GO:0009765: photosynthesis, light harvesting	1.62E-03
78	GO:2000306: positive regulation of photomorphogenesis	1.62E-03
79	GO:1901002: positive regulation of response to salt stress	1.62E-03
80	GO:0030104: water homeostasis	1.62E-03
81	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.72E-03
82	GO:0006351: transcription, DNA-templated	1.81E-03
83	GO:0006970: response to osmotic stress	1.87E-03
84	GO:0043097: pyrimidine nucleoside salvage	2.07E-03
85	GO:0009904: chloroplast accumulation movement	2.07E-03
86	GO:0006461: protein complex assembly	2.07E-03
87	GO:0016123: xanthophyll biosynthetic process	2.07E-03
88	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.07E-03
89	GO:0080167: response to karrikin	2.32E-03
90	GO:0006206: pyrimidine nucleobase metabolic process	2.55E-03
91	GO:0009635: response to herbicide	2.55E-03
92	GO:0031053: primary miRNA processing	2.55E-03
93	GO:0045962: positive regulation of development, heterochronic	2.55E-03
94	GO:0017148: negative regulation of translation	3.06E-03
95	GO:0009903: chloroplast avoidance movement	3.06E-03
96	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.06E-03
97	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.06E-03
98	GO:0071470: cellular response to osmotic stress	3.06E-03
99	GO:0010286: heat acclimation	3.17E-03
100	GO:0010038: response to metal ion	3.61E-03
101	GO:0010044: response to aluminum ion	3.61E-03
102	GO:0048437: floral organ development	3.61E-03
103	GO:0010029: regulation of seed germination	3.76E-03
104	GO:0009408: response to heat	4.19E-03
105	GO:0015995: chlorophyll biosynthetic process	4.19E-03
106	GO:0009415: response to water	4.19E-03
107	GO:0006506: GPI anchor biosynthetic process	4.19E-03
108	GO:0010078: maintenance of root meristem identity	4.19E-03
109	GO:0009704: de-etiolation	4.19E-03
110	GO:0032508: DNA duplex unwinding	4.19E-03
111	GO:0009817: defense response to fungus, incompatible interaction	4.64E-03
112	GO:0007186: G-protein coupled receptor signaling pathway	4.79E-03
113	GO:0010099: regulation of photomorphogenesis	4.79E-03
114	GO:0009631: cold acclimation	5.36E-03
115	GO:0010043: response to zinc ion	5.36E-03
116	GO:0090333: regulation of stomatal closure	5.43E-03
117	GO:0046685: response to arsenic-containing substance	5.43E-03
118	GO:0045087: innate immune response	5.87E-03
119	GO:0008356: asymmetric cell division	6.09E-03
120	GO:0030042: actin filament depolymerization	6.09E-03
121	GO:0006535: cysteine biosynthetic process from serine	6.78E-03
122	GO:0048441: petal development	6.78E-03
123	GO:0009688: abscisic acid biosynthetic process	6.78E-03
124	GO:0009641: shade avoidance	6.78E-03
125	GO:0010162: seed dormancy process	6.78E-03
126	GO:0055062: phosphate ion homeostasis	6.78E-03
127	GO:0006816: calcium ion transport	7.50E-03
128	GO:0016925: protein sumoylation	8.25E-03
129	GO:0009735: response to cytokinin	8.74E-03
130	GO:0009785: blue light signaling pathway	9.02E-03
131	GO:0050826: response to freezing	9.02E-03
132	GO:0018107: peptidyl-threonine phosphorylation	9.02E-03
133	GO:0009718: anthocyanin-containing compound biosynthetic process	9.02E-03
134	GO:0007015: actin filament organization	9.82E-03
135	GO:0009266: response to temperature stimulus	9.82E-03
136	GO:0048440: carpel development	9.82E-03
137	GO:0009723: response to ethylene	1.00E-02
138	GO:0009651: response to salt stress	1.03E-02
139	GO:0019853: L-ascorbic acid biosynthetic process	1.06E-02
140	GO:0051603: proteolysis involved in cellular protein catabolic process	1.06E-02
141	GO:0090351: seedling development	1.06E-02
142	GO:0007030: Golgi organization	1.06E-02
143	GO:0007165: signal transduction	1.10E-02
144	GO:0006857: oligopeptide transport	1.10E-02
145	GO:0044550: secondary metabolite biosynthetic process	1.22E-02
146	GO:0006406: mRNA export from nucleus	1.24E-02
147	GO:0019344: cysteine biosynthetic process	1.24E-02
148	GO:0016575: histone deacetylation	1.32E-02
149	GO:0045892: negative regulation of transcription, DNA-templated	1.40E-02
150	GO:0003333: amino acid transmembrane transport	1.42E-02
151	GO:0010431: seed maturation	1.42E-02
152	GO:0061077: chaperone-mediated protein folding	1.42E-02
153	GO:0009269: response to desiccation	1.42E-02
154	GO:0009553: embryo sac development	1.42E-02
155	GO:0055085: transmembrane transport	1.44E-02
156	GO:0009624: response to nematode	1.46E-02
157	GO:0019748: secondary metabolic process	1.51E-02
158	GO:0009693: ethylene biosynthetic process	1.61E-02
159	GO:0071215: cellular response to abscisic acid stimulus	1.61E-02
160	GO:0006012: galactose metabolic process	1.61E-02
161	GO:0019722: calcium-mediated signaling	1.70E-02
162	GO:0048443: stamen development	1.70E-02
163	GO:0070417: cellular response to cold	1.80E-02
164	GO:0034220: ion transmembrane transport	1.91E-02
165	GO:0010501: RNA secondary structure unwinding	1.91E-02
166	GO:0010182: sugar mediated signaling pathway	2.01E-02
167	GO:0006814: sodium ion transport	2.12E-02
168	GO:0042752: regulation of circadian rhythm	2.12E-02
169	GO:0008654: phospholipid biosynthetic process	2.23E-02
170	GO:0009556: microsporogenesis	2.23E-02
171	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.34E-02
172	GO:0000302: response to reactive oxygen species	2.34E-02
173	GO:0009630: gravitropism	2.45E-02
174	GO:1901657: glycosyl compound metabolic process	2.56E-02
175	GO:0010228: vegetative to reproductive phase transition of meristem	2.65E-02
176	GO:0009567: double fertilization forming a zygote and endosperm	2.68E-02
177	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.83E-02
178	GO:0009739: response to gibberellin	2.83E-02
179	GO:0008380: RNA splicing	3.02E-02
180	GO:0010468: regulation of gene expression	3.02E-02
181	GO:0016126: sterol biosynthetic process	3.04E-02
182	GO:0048573: photoperiodism, flowering	3.41E-02
183	GO:0006950: response to stress	3.41E-02
184	GO:0009738: abscisic acid-activated signaling pathway	3.52E-02
185	GO:0009611: response to wounding	3.77E-02
186	GO:0006811: ion transport	3.93E-02
187	GO:0006865: amino acid transport	4.20E-02

Rank	GO Term	Adjusted P value
1	GO:0080082: esculin beta-glucosidase activity	0.00E+00
2	GO:0004567: beta-mannosidase activity	0.00E+00
3	GO:0015276: ligand-gated ion channel activity	0.00E+00
4	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
5	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
6	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
7	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
8	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
9	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
10	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
11	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
12	GO:0031409: pigment binding	2.74E-10
13	GO:0016168: chlorophyll binding	3.81E-08
14	GO:0008066: glutamate receptor activity	2.36E-04
15	GO:0000828: inositol hexakisphosphate kinase activity	2.36E-04
16	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	2.36E-04
17	GO:0008158: hedgehog receptor activity	2.36E-04
18	GO:0031516: far-red light photoreceptor activity	2.36E-04
19	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.36E-04
20	GO:0000829: inositol heptakisphosphate kinase activity	2.36E-04
21	GO:0080079: cellobiose glucosidase activity	2.36E-04
22	GO:0005515: protein binding	4.81E-04
23	GO:0016630: protochlorophyllide reductase activity	5.24E-04
24	GO:0015180: L-alanine transmembrane transporter activity	5.24E-04
25	GO:0050017: L-3-cyanoalanine synthase activity	5.24E-04
26	GO:0005274: allantoin uptake transmembrane transporter activity	5.24E-04
27	GO:0009883: red or far-red light photoreceptor activity	5.24E-04
28	GO:0004609: phosphatidylserine decarboxylase activity	5.24E-04
29	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.24E-04
30	GO:0000155: phosphorelay sensor kinase activity	6.63E-04
31	GO:0004970: ionotropic glutamate receptor activity	8.34E-04
32	GO:0005217: intracellular ligand-gated ion channel activity	8.34E-04
33	GO:0008020: G-protein coupled photoreceptor activity	8.52E-04
34	GO:0046592: polyamine oxidase activity	8.52E-04
35	GO:0019948: SUMO activating enzyme activity	8.52E-04
36	GO:0017150: tRNA dihydrouridine synthase activity	8.52E-04
37	GO:0015181: arginine transmembrane transporter activity	1.21E-03
38	GO:0009882: blue light photoreceptor activity	1.21E-03
39	GO:0015189: L-lysine transmembrane transporter activity	1.21E-03
40	GO:0000254: C-4 methylsterol oxidase activity	1.21E-03
41	GO:0004707: MAP kinase activity	1.23E-03
42	GO:0005313: L-glutamate transmembrane transporter activity	1.62E-03
43	GO:0005253: anion channel activity	1.62E-03
44	GO:0004930: G-protein coupled receptor activity	1.62E-03
45	GO:0004845: uracil phosphoribosyltransferase activity	1.62E-03
46	GO:0015210: uracil transmembrane transporter activity	1.62E-03
47	GO:0015171: amino acid transmembrane transporter activity	1.73E-03
48	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.07E-03
49	GO:0015562: efflux transmembrane transporter activity	2.55E-03
50	GO:0005247: voltage-gated chloride channel activity	2.55E-03
51	GO:0004629: phospholipase C activity	2.55E-03
52	GO:0000156: phosphorelay response regulator activity	2.81E-03
53	GO:0004849: uridine kinase activity	3.06E-03
54	GO:0004435: phosphatidylinositol phospholipase C activity	3.06E-03
55	GO:0004124: cysteine synthase activity	3.06E-03
56	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.27E-03
57	GO:0004033: aldo-keto reductase (NADP) activity	4.19E-03
58	GO:0001104: RNA polymerase II transcription cofactor activity	4.79E-03
59	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	4.79E-03
60	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.79E-03
61	GO:0046872: metal ion binding	5.32E-03
62	GO:0000989: transcription factor activity, transcription factor binding	5.43E-03
63	GO:0071949: FAD binding	5.43E-03
64	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.43E-03
65	GO:0004672: protein kinase activity	5.55E-03
66	GO:0003700: transcription factor activity, sequence-specific DNA binding	6.17E-03
67	GO:0004673: protein histidine kinase activity	6.78E-03
68	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	6.78E-03
69	GO:0047372: acylglycerol lipase activity	7.50E-03
70	GO:0004022: alcohol dehydrogenase (NAD) activity	9.02E-03
71	GO:0005315: inorganic phosphate transmembrane transporter activity	9.02E-03
72	GO:0005262: calcium channel activity	9.02E-03
73	GO:0008131: primary amine oxidase activity	9.82E-03
74	GO:0003712: transcription cofactor activity	1.06E-02
75	GO:0005215: transporter activity	1.06E-02
76	GO:0004497: monooxygenase activity	1.09E-02
77	GO:0003677: DNA binding	1.11E-02
78	GO:0031625: ubiquitin protein ligase binding	1.13E-02
79	GO:0004407: histone deacetylase activity	1.24E-02
80	GO:0008270: zinc ion binding	1.28E-02
81	GO:0008324: cation transmembrane transporter activity	1.32E-02
82	GO:0005216: ion channel activity	1.32E-02
83	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.42E-02
84	GO:0022891: substrate-specific transmembrane transporter activity	1.61E-02
85	GO:0008514: organic anion transmembrane transporter activity	1.70E-02
86	GO:0010181: FMN binding	2.12E-02
87	GO:0015144: carbohydrate transmembrane transporter activity	2.19E-02
88	GO:0004674: protein serine/threonine kinase activity	2.30E-02
89	GO:0015297: antiporter activity	2.41E-02
90	GO:0004197: cysteine-type endopeptidase activity	2.45E-02
91	GO:0005351: sugar:proton symporter activity	2.47E-02
92	GO:0005506: iron ion binding	2.81E-02
93	GO:0042802: identical protein binding	3.21E-02
94	GO:0102483: scopolin beta-glucosidase activity	3.41E-02
95	GO:0016301: kinase activity	3.43E-02
96	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.93E-02
97	GO:0003697: single-stranded DNA binding	4.34E-02
98	GO:0004842: ubiquitin-protein transferase activity	4.59E-02
99	GO:0008422: beta-glucosidase activity	4.62E-02
100	GO:0016740: transferase activity	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0030076: light-harvesting complex	1.66E-08
2	GO:0010287: plastoglobule	2.50E-07
3	GO:0009522: photosystem I	2.85E-07
4	GO:0009523: photosystem II	1.20E-05
5	GO:0009898: cytoplasmic side of plasma membrane	3.91E-05
6	GO:0009534: chloroplast thylakoid	4.10E-05
7	GO:0009579: thylakoid	2.20E-04
8	GO:0016021: integral component of membrane	2.52E-04
9	GO:0009941: chloroplast envelope	4.16E-04
10	GO:0009535: chloroplast thylakoid membrane	4.60E-04
11	GO:0016020: membrane	1.47E-03
12	GO:0009517: PSII associated light-harvesting complex II	1.62E-03
13	GO:0010445: nuclear dicing body	1.62E-03
14	GO:0032586: protein storage vacuole membrane	1.62E-03
15	GO:0016607: nuclear speck	1.96E-03
16	GO:0005798: Golgi-associated vesicle	2.55E-03
17	GO:0070847: core mediator complex	2.55E-03
18	GO:0005851: eukaryotic translation initiation factor 2B complex	2.55E-03
19	GO:0034707: chloride channel complex	2.55E-03
20	GO:0009986: cell surface	3.61E-03
21	GO:0000151: ubiquitin ligase complex	4.64E-03
22	GO:0000326: protein storage vacuole	4.79E-03
23	GO:0010494: cytoplasmic stress granule	5.43E-03
24	GO:0016604: nuclear body	6.09E-03
25	GO:0005886: plasma membrane	6.90E-03
26	GO:0005938: cell cortex	9.02E-03
27	GO:0005764: lysosome	9.82E-03
28	GO:0005769: early endosome	1.15E-02
29	GO:0005681: spliceosomal complex	1.21E-02
30	GO:0042651: thylakoid membrane	1.32E-02
31	GO:0015629: actin cytoskeleton	1.61E-02
32	GO:0005634: nucleus	2.11E-02
33	GO:0005622: intracellular	2.37E-02
34	GO:0016592: mediator complex	2.45E-02
35	GO:0000932: P-body	3.04E-02
36	GO:0009707: chloroplast outer membrane	3.67E-02
37	GO:0005777: peroxisome	4.34E-02
38	GO:0009507: chloroplast	4.58E-02
39	GO:0031969: chloroplast membrane	4.82E-02