co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1904526: regulation of microtubule binding	0.00E+00
2	GO:0090391: granum assembly	9.50E-07
3	GO:0015979: photosynthesis	1.50E-05
4	GO:1902458: positive regulation of stomatal opening	6.58E-05
5	GO:0010028: xanthophyll cycle	6.58E-05
6	GO:0034337: RNA folding	6.58E-05
7	GO:0016122: xanthophyll metabolic process	1.59E-04
8	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.59E-04
9	GO:1901332: negative regulation of lateral root development	3.90E-04
10	GO:0015994: chlorophyll metabolic process	5.20E-04
11	GO:0010027: thylakoid membrane organization	6.52E-04
12	GO:0045038: protein import into chloroplast thylakoid membrane	6.60E-04
13	GO:0009959: negative gravitropism	8.06E-04
14	GO:1901259: chloroplast rRNA processing	9.59E-04
15	GO:0045926: negative regulation of growth	9.59E-04
16	GO:0010196: nonphotochemical quenching	1.12E-03
17	GO:2000070: regulation of response to water deprivation	1.29E-03
18	GO:0022900: electron transport chain	1.47E-03
19	GO:0010206: photosystem II repair	1.65E-03
20	GO:0008356: asymmetric cell division	1.85E-03
21	GO:0046856: phosphatidylinositol dephosphorylation	2.26E-03
22	GO:0006094: gluconeogenesis	2.70E-03
23	GO:0010207: photosystem II assembly	2.93E-03
24	GO:0090351: seedling development	3.16E-03
25	GO:0006863: purine nucleobase transport	3.40E-03
26	GO:0005992: trehalose biosynthetic process	3.65E-03
27	GO:0016998: cell wall macromolecule catabolic process	4.17E-03
28	GO:0009306: protein secretion	4.98E-03
29	GO:0000302: response to reactive oxygen species	6.76E-03
30	GO:0016032: viral process	7.08E-03
31	GO:0009639: response to red or far red light	7.73E-03
32	GO:0016310: phosphorylation	7.75E-03
33	GO:0015995: chlorophyll biosynthetic process	9.79E-03
34	GO:0010411: xyloglucan metabolic process	9.79E-03
35	GO:0010311: lateral root formation	1.09E-02
36	GO:0007568: aging	1.17E-02
37	GO:0034599: cellular response to oxidative stress	1.28E-02
38	GO:0008152: metabolic process	1.35E-02
39	GO:0006631: fatty acid metabolic process	1.40E-02
40	GO:0042546: cell wall biogenesis	1.53E-02
41	GO:0051603: proteolysis involved in cellular protein catabolic process	1.88E-02
42	GO:0006096: glycolytic process	2.07E-02
43	GO:0042744: hydrogen peroxide catabolic process	3.04E-02
44	GO:0007623: circadian rhythm	3.49E-02
45	GO:0009451: RNA modification	3.54E-02
46	GO:0006470: protein dephosphorylation	3.83E-02
47	GO:0007166: cell surface receptor signaling pathway	3.83E-02
48	GO:0006508: proteolysis	3.96E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
3	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
4	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	6.58E-05
5	GO:0004856: xylulokinase activity	6.58E-05
6	GO:0009977: proton motive force dependent protein transmembrane transporter activity	1.59E-04
7	GO:0004445: inositol-polyphosphate 5-phosphatase activity	3.90E-04
8	GO:0016851: magnesium chelatase activity	3.90E-04
9	GO:0016773: phosphotransferase activity, alcohol group as acceptor	6.60E-04
10	GO:0004130: cytochrome-c peroxidase activity	8.06E-04
11	GO:0042578: phosphoric ester hydrolase activity	8.06E-04
12	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	8.06E-04
13	GO:0004332: fructose-bisphosphate aldolase activity	8.06E-04
14	GO:0016787: hydrolase activity	1.49E-03
15	GO:0004805: trehalose-phosphatase activity	2.05E-03
16	GO:0047372: acylglycerol lipase activity	2.26E-03
17	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	2.48E-03
18	GO:0031072: heat shock protein binding	2.70E-03
19	GO:0019843: rRNA binding	3.15E-03
20	GO:0005528: FK506 binding	3.65E-03
21	GO:0005345: purine nucleobase transmembrane transporter activity	3.90E-03
22	GO:0004176: ATP-dependent peptidase activity	4.17E-03
23	GO:0003756: protein disulfide isomerase activity	4.98E-03
24	GO:0016762: xyloglucan:xyloglucosyl transferase activity	6.76E-03
25	GO:0016798: hydrolase activity, acting on glycosyl bonds	9.79E-03
26	GO:0003746: translation elongation factor activity	1.24E-02
27	GO:0009055: electron carrier activity	1.32E-02
28	GO:0004519: endonuclease activity	1.34E-02
29	GO:0004185: serine-type carboxypeptidase activity	1.49E-02
30	GO:0051537: 2 iron, 2 sulfur cluster binding	1.57E-02
31	GO:0005198: structural molecule activity	1.62E-02
32	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.66E-02
33	GO:0003777: microtubule motor activity	1.98E-02
34	GO:0051082: unfolded protein binding	2.36E-02
35	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.32E-02
36	GO:0004601: peroxidase activity	4.75E-02
37	GO:0016788: hydrolase activity, acting on ester bonds	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009507: chloroplast	2.46E-18
3	GO:0009534: chloroplast thylakoid	1.01E-16
4	GO:0009535: chloroplast thylakoid membrane	3.72E-14
5	GO:0009543: chloroplast thylakoid lumen	2.36E-08
6	GO:0009570: chloroplast stroma	9.58E-07
7	GO:0031977: thylakoid lumen	3.21E-06
8	GO:0009579: thylakoid	1.46E-05
9	GO:0009515: granal stacked thylakoid	6.58E-05
10	GO:0009941: chloroplast envelope	9.26E-05
11	GO:0030095: chloroplast photosystem II	1.27E-04
12	GO:0010007: magnesium chelatase complex	2.69E-04
13	GO:0033281: TAT protein transport complex	2.69E-04
14	GO:0010287: plastoglobule	3.24E-04
15	GO:0042646: plastid nucleoid	3.90E-04
16	GO:0016363: nuclear matrix	9.59E-04
17	GO:0009538: photosystem I reaction center	1.29E-03
18	GO:0042644: chloroplast nucleoid	1.65E-03
19	GO:0032040: small-subunit processome	2.48E-03
20	GO:0009508: plastid chromosome	2.70E-03
21	GO:0009654: photosystem II oxygen evolving complex	3.90E-03
22	GO:0009522: photosystem I	6.15E-03
23	GO:0009523: photosystem II	6.45E-03
24	GO:0019898: extrinsic component of membrane	6.45E-03
25	GO:0009295: nucleoid	8.06E-03
26	GO:0005840: ribosome	1.03E-02