co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
2	GO:0071433: cell wall repair	0.00E+00
3	GO:0000494: box C/D snoRNA 3'-end processing	0.00E+00
4	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
5	GO:1990258: histone glutamine methylation	0.00E+00
6	GO:0006412: translation	5.58E-16
7	GO:0000027: ribosomal large subunit assembly	8.07E-07
8	GO:0031167: rRNA methylation	2.41E-06
9	GO:0001510: RNA methylation	1.32E-05
10	GO:0010162: seed dormancy process	2.52E-05
11	GO:0031120: snRNA pseudouridine synthesis	3.37E-05
12	GO:0031118: rRNA pseudouridine synthesis	3.37E-05
13	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	3.37E-05
14	GO:0006626: protein targeting to mitochondrion	4.16E-05
15	GO:0006364: rRNA processing	4.42E-05
16	GO:0009944: polarity specification of adaxial/abaxial axis	7.06E-05
17	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	8.48E-05
18	GO:0055129: L-proline biosynthetic process	8.48E-05
19	GO:0009294: DNA mediated transformation	1.08E-04
20	GO:0008033: tRNA processing	1.41E-04
21	GO:1902626: assembly of large subunit precursor of preribosome	1.47E-04
22	GO:0090506: axillary shoot meristem initiation	1.47E-04
23	GO:0008652: cellular amino acid biosynthetic process	1.47E-04
24	GO:2000032: regulation of secondary shoot formation	2.95E-04
25	GO:0071493: cellular response to UV-B	3.77E-04
26	GO:0006561: proline biosynthetic process	4.63E-04
27	GO:0009088: threonine biosynthetic process	5.53E-04
28	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	6.47E-04
29	GO:0000028: ribosomal small subunit assembly	7.44E-04
30	GO:0009089: lysine biosynthetic process via diaminopimelate	1.28E-03
31	GO:0006820: anion transport	1.40E-03
32	GO:0010229: inflorescence development	1.52E-03
33	GO:0048467: gynoecium development	1.65E-03
34	GO:0030150: protein import into mitochondrial matrix	2.05E-03
35	GO:0006334: nucleosome assembly	2.33E-03
36	GO:0007005: mitochondrion organization	2.48E-03
37	GO:0042254: ribosome biogenesis	2.90E-03
38	GO:0009791: post-embryonic development	3.59E-03
39	GO:0032502: developmental process	3.93E-03
40	GO:0010252: auxin homeostasis	4.28E-03
41	GO:0006811: ion transport	6.20E-03
42	GO:0010043: response to zinc ion	6.40E-03
43	GO:0008283: cell proliferation	8.14E-03
44	GO:0000154: rRNA modification	8.82E-03
45	GO:0016569: covalent chromatin modification	1.23E-02
46	GO:0009651: response to salt stress	1.49E-02
47	GO:0006413: translational initiation	1.80E-02
48	GO:0009451: RNA modification	1.92E-02
49	GO:0015031: protein transport	2.38E-02
50	GO:0046686: response to cadmium ion	2.91E-02
51	GO:0045892: negative regulation of transcription, DNA-templated	3.46E-02
52	GO:0032259: methylation	3.85E-02
53	GO:0009408: response to heat	3.97E-02
54	GO:0048364: root development	4.10E-02
55	GO:0009793: embryo development ending in seed dormancy	4.31E-02

Rank	GO Term	Adjusted P value
1	GO:1990259: histone-glutamine methyltransferase activity	0.00E+00
2	GO:0004164: diphthine synthase activity	0.00E+00
3	GO:0004735: pyrroline-5-carboxylate reductase activity	0.00E+00
4	GO:0003735: structural constituent of ribosome	3.39E-19
5	GO:0030515: snoRNA binding	2.53E-08
6	GO:0008649: rRNA methyltransferase activity	2.98E-07
7	GO:0003729: mRNA binding	1.11E-06
8	GO:0003723: RNA binding	3.07E-06
9	GO:0004407: histone deacetylase activity	7.06E-05
10	GO:0070180: large ribosomal subunit rRNA binding	1.47E-04
11	GO:0004072: aspartate kinase activity	2.18E-04
12	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.66E-04
13	GO:0015288: porin activity	7.44E-04
14	GO:0008308: voltage-gated anion channel activity	8.45E-04
15	GO:0009982: pseudouridine synthase activity	1.52E-03
16	GO:0015266: protein channel activity	1.52E-03
17	GO:0005528: FK506 binding	2.05E-03
18	GO:0016597: amino acid binding	4.64E-03
19	GO:0003746: translation elongation factor activity	6.82E-03
20	GO:0042393: histone binding	7.47E-03
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.06E-03
22	GO:0008026: ATP-dependent helicase activity	1.34E-02
23	GO:0019843: rRNA binding	1.51E-02
24	GO:0003743: translation initiation factor activity	2.11E-02
25	GO:0008168: methyltransferase activity	2.51E-02
26	GO:0003924: GTPase activity	3.97E-02
27	GO:0009055: electron carrier activity	4.18E-02
28	GO:0004519: endonuclease activity	4.22E-02

Rank	GO Term	Adjusted P value
1	GO:0005730: nucleolus	5.59E-25
2	GO:0022625: cytosolic large ribosomal subunit	4.09E-15
3	GO:0022626: cytosolic ribosome	6.80E-15
4	GO:0005840: ribosome	1.85E-11
5	GO:0031428: box C/D snoRNP complex	8.58E-09
6	GO:0005829: cytosol	1.98E-07
7	GO:0015934: large ribosomal subunit	2.58E-07
8	GO:0032040: small-subunit processome	2.72E-07
9	GO:0022627: cytosolic small ribosomal subunit	4.37E-07
10	GO:0009506: plasmodesma	2.95E-06
11	GO:0005774: vacuolar membrane	1.71E-05
12	GO:0015030: Cajal body	2.07E-05
13	GO:0005773: vacuole	5.96E-05
14	GO:0005758: mitochondrial intermembrane space	7.06E-05
15	GO:0005618: cell wall	1.86E-04
16	GO:0031429: box H/ACA snoRNP complex	2.18E-04
17	GO:0046930: pore complex	8.45E-04
18	GO:0005742: mitochondrial outer membrane translocase complex	8.45E-04
19	GO:0005852: eukaryotic translation initiation factor 3 complex	1.28E-03
20	GO:0016020: membrane	1.45E-03
21	GO:0070469: respiratory chain	2.19E-03
22	GO:0005741: mitochondrial outer membrane	2.33E-03
23	GO:0015935: small ribosomal subunit	2.33E-03
24	GO:0005737: cytoplasm	3.80E-03
25	GO:0016592: mediator complex	3.93E-03
26	GO:0005743: mitochondrial inner membrane	4.82E-03
27	GO:0005759: mitochondrial matrix	1.77E-02
28	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.76E-02
29	GO:0005789: endoplasmic reticulum membrane	2.86E-02
30	GO:0009535: chloroplast thylakoid membrane	4.17E-02