Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G63310

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
2GO:0006223: uracil salvage0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0042407: cristae formation0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0006399: tRNA metabolic process0.00E+00
8GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
9GO:0008064: regulation of actin polymerization or depolymerization0.00E+00
10GO:0070125: mitochondrial translational elongation0.00E+00
11GO:0051493: regulation of cytoskeleton organization0.00E+00
12GO:0002184: cytoplasmic translational termination0.00E+00
13GO:0032544: plastid translation7.53E-17
14GO:0006412: translation2.67E-13
15GO:0009658: chloroplast organization5.26E-09
16GO:0006695: cholesterol biosynthetic process4.22E-06
17GO:0006418: tRNA aminoacylation for protein translation5.18E-06
18GO:0042254: ribosome biogenesis1.44E-05
19GO:0006457: protein folding2.92E-05
20GO:0051085: chaperone mediated protein folding requiring cofactor3.35E-05
21GO:0007017: microtubule-based process1.31E-04
22GO:0009793: embryo development ending in seed dormancy1.37E-04
23GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.95E-04
24GO:0000413: protein peptidyl-prolyl isomerization2.72E-04
25GO:0045454: cell redox homeostasis2.73E-04
26GO:0009735: response to cytokinin2.82E-04
27GO:0043489: RNA stabilization3.04E-04
28GO:1904966: positive regulation of vitamin E biosynthetic process3.04E-04
29GO:0010442: guard cell morphogenesis3.04E-04
30GO:0006426: glycyl-tRNA aminoacylation3.04E-04
31GO:1904964: positive regulation of phytol biosynthetic process3.04E-04
32GO:0042371: vitamin K biosynthetic process3.04E-04
33GO:0006430: lysyl-tRNA aminoacylation3.04E-04
34GO:0060627: regulation of vesicle-mediated transport3.04E-04
35GO:0045337: farnesyl diphosphate biosynthetic process4.57E-04
36GO:0033384: geranyl diphosphate biosynthetic process4.57E-04
37GO:0042742: defense response to bacterium5.04E-04
38GO:0009828: plant-type cell wall loosening5.13E-04
39GO:0045036: protein targeting to chloroplast6.31E-04
40GO:0006949: syncytium formation6.31E-04
41GO:0010027: thylakoid membrane organization6.42E-04
42GO:0052541: plant-type cell wall cellulose metabolic process6.66E-04
43GO:1902326: positive regulation of chlorophyll biosynthetic process6.66E-04
44GO:0010069: zygote asymmetric cytokinesis in embryo sac6.66E-04
45GO:0006423: cysteinyl-tRNA aminoacylation6.66E-04
46GO:0071258: cellular response to gravity6.66E-04
47GO:0006568: tryptophan metabolic process6.66E-04
48GO:0010270: photosystem II oxygen evolving complex assembly6.66E-04
49GO:0010424: DNA methylation on cytosine within a CG sequence6.66E-04
50GO:0043039: tRNA aminoacylation6.66E-04
51GO:0043085: positive regulation of catalytic activity7.28E-04
52GO:0018119: peptidyl-cysteine S-nitrosylation7.28E-04
53GO:0009409: response to cold1.05E-03
54GO:0010020: chloroplast fission1.06E-03
55GO:0010581: regulation of starch biosynthetic process1.08E-03
56GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.08E-03
57GO:0006065: UDP-glucuronate biosynthetic process1.08E-03
58GO:0009790: embryo development1.16E-03
59GO:0006633: fatty acid biosynthetic process1.30E-03
60GO:0006631: fatty acid metabolic process1.49E-03
61GO:0006424: glutamyl-tRNA aminoacylation1.55E-03
62GO:0010088: phloem development1.55E-03
63GO:0043572: plastid fission1.55E-03
64GO:0006986: response to unfolded protein1.55E-03
65GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.55E-03
66GO:2001141: regulation of RNA biosynthetic process1.55E-03
67GO:0051322: anaphase2.07E-03
68GO:0009765: photosynthesis, light harvesting2.07E-03
69GO:0044206: UMP salvage2.07E-03
70GO:0006808: regulation of nitrogen utilization2.07E-03
71GO:0009664: plant-type cell wall organization2.21E-03
72GO:0016117: carotenoid biosynthetic process2.47E-03
73GO:0032543: mitochondrial translation2.65E-03
74GO:0048359: mucilage metabolic process involved in seed coat development2.65E-03
75GO:0016120: carotene biosynthetic process2.65E-03
76GO:0045038: protein import into chloroplast thylakoid membrane2.65E-03
77GO:0043097: pyrimidine nucleoside salvage2.65E-03
78GO:0016123: xanthophyll biosynthetic process2.65E-03
79GO:0042335: cuticle development2.67E-03
80GO:0006555: methionine metabolic process3.27E-03
81GO:0006796: phosphate-containing compound metabolic process3.27E-03
82GO:0010190: cytochrome b6f complex assembly3.27E-03
83GO:0006828: manganese ion transport3.27E-03
84GO:0006206: pyrimidine nucleobase metabolic process3.27E-03
85GO:0032973: amino acid export3.27E-03
86GO:0006014: D-ribose metabolic process3.27E-03
87GO:0006354: DNA-templated transcription, elongation3.27E-03
88GO:0042549: photosystem II stabilization3.27E-03
89GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.27E-03
90GO:0032502: developmental process3.79E-03
91GO:0042372: phylloquinone biosynthetic process3.93E-03
92GO:0010067: procambium histogenesis3.93E-03
93GO:0042026: protein refolding3.93E-03
94GO:0048280: vesicle fusion with Golgi apparatus3.93E-03
95GO:1901259: chloroplast rRNA processing3.93E-03
96GO:0009854: oxidative photosynthetic carbon pathway3.93E-03
97GO:0010555: response to mannitol3.93E-03
98GO:0009955: adaxial/abaxial pattern specification3.93E-03
99GO:0046686: response to cadmium ion4.41E-03
100GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.64E-03
101GO:0045995: regulation of embryonic development4.64E-03
102GO:0048528: post-embryonic root development4.64E-03
103GO:0043090: amino acid import4.64E-03
104GO:0000910: cytokinesis4.84E-03
105GO:0015979: photosynthesis4.96E-03
106GO:0010928: regulation of auxin mediated signaling pathway5.39E-03
107GO:0009642: response to light intensity5.39E-03
108GO:0042255: ribosome assembly5.39E-03
109GO:0006353: DNA-templated transcription, termination5.39E-03
110GO:0009627: systemic acquired resistance5.72E-03
111GO:0015995: chlorophyll biosynthetic process6.04E-03
112GO:0071482: cellular response to light stimulus6.18E-03
113GO:0019430: removal of superoxide radicals6.18E-03
114GO:0009657: plastid organization6.18E-03
115GO:0006526: arginine biosynthetic process6.18E-03
116GO:0048481: plant ovule development6.69E-03
117GO:0009817: defense response to fungus, incompatible interaction6.69E-03
118GO:0080144: amino acid homeostasis7.01E-03
119GO:0006783: heme biosynthetic process7.01E-03
120GO:0015780: nucleotide-sugar transport7.01E-03
121GO:0043067: regulation of programmed cell death7.87E-03
122GO:0006779: porphyrin-containing compound biosynthetic process7.87E-03
123GO:0035999: tetrahydrofolate interconversion7.87E-03
124GO:0042761: very long-chain fatty acid biosynthetic process7.87E-03
125GO:0006349: regulation of gene expression by genetic imprinting7.87E-03
126GO:0010380: regulation of chlorophyll biosynthetic process7.87E-03
127GO:0006896: Golgi to vacuole transport8.77E-03
128GO:0006782: protoporphyrinogen IX biosynthetic process8.77E-03
129GO:0006816: calcium ion transport9.71E-03
130GO:0009773: photosynthetic electron transport in photosystem I9.71E-03
131GO:0009073: aromatic amino acid family biosynthetic process9.71E-03
132GO:0006352: DNA-templated transcription, initiation9.71E-03
133GO:0006415: translational termination9.71E-03
134GO:0010216: maintenance of DNA methylation9.71E-03
135GO:0045037: protein import into chloroplast stroma1.07E-02
136GO:0009826: unidimensional cell growth1.27E-02
137GO:0010207: photosystem II assembly1.27E-02
138GO:0010223: secondary shoot formation1.27E-02
139GO:0010025: wax biosynthetic process1.49E-02
140GO:0006071: glycerol metabolic process1.49E-02
141GO:0000027: ribosomal large subunit assembly1.60E-02
142GO:0007010: cytoskeleton organization1.60E-02
143GO:0019344: cysteine biosynthetic process1.60E-02
144GO:0009116: nucleoside metabolic process1.60E-02
145GO:0008299: isoprenoid biosynthetic process1.72E-02
146GO:0010026: trichome differentiation1.72E-02
147GO:0006508: proteolysis1.87E-02
148GO:0006730: one-carbon metabolic process1.96E-02
149GO:0007005: mitochondrion organization1.96E-02
150GO:0009294: DNA mediated transformation2.09E-02
151GO:0001944: vasculature development2.09E-02
152GO:0019722: calcium-mediated signaling2.22E-02
153GO:0010089: xylem development2.22E-02
154GO:0042147: retrograde transport, endosome to Golgi2.35E-02
155GO:0006869: lipid transport2.46E-02
156GO:0000226: microtubule cytoskeleton organization2.48E-02
157GO:0008360: regulation of cell shape2.62E-02
158GO:0009958: positive gravitropism2.62E-02
159GO:0006520: cellular amino acid metabolic process2.62E-02
160GO:0006662: glycerol ether metabolic process2.62E-02
161GO:0010197: polar nucleus fusion2.62E-02
162GO:0007018: microtubule-based movement2.76E-02
163GO:0006623: protein targeting to vacuole2.90E-02
164GO:0019252: starch biosynthetic process2.90E-02
165GO:0006891: intra-Golgi vesicle-mediated transport3.04E-02
166GO:0007264: small GTPase mediated signal transduction3.19E-02
167GO:0016032: viral process3.19E-02
168GO:0007267: cell-cell signaling3.64E-02
169GO:0055114: oxidation-reduction process3.76E-02
170GO:0006888: ER to Golgi vesicle-mediated transport4.44E-02
171GO:0016311: dephosphorylation4.60E-02
172GO:0018298: protein-chromophore linkage4.77E-02
173GO:0008219: cell death4.77E-02
174GO:0009813: flavonoid biosynthetic process4.94E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
3GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
4GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
5GO:0008887: glycerate kinase activity0.00E+00
6GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
7GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0004822: isoleucine-tRNA ligase activity0.00E+00
10GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
11GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
12GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
13GO:0005048: signal sequence binding0.00E+00
14GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
15GO:0019843: rRNA binding1.56E-21
16GO:0003735: structural constituent of ribosome1.21E-14
17GO:0051920: peroxiredoxin activity2.47E-08
18GO:0016209: antioxidant activity8.79E-08
19GO:0004812: aminoacyl-tRNA ligase activity1.35E-05
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.01E-05
21GO:0005525: GTP binding2.97E-04
22GO:0004824: lysine-tRNA ligase activity3.04E-04
23GO:0004831: tyrosine-tRNA ligase activity3.04E-04
24GO:0004655: porphobilinogen synthase activity3.04E-04
25GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity3.04E-04
26GO:0004820: glycine-tRNA ligase activity3.04E-04
27GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.04E-04
28GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.04E-04
29GO:0004425: indole-3-glycerol-phosphate synthase activity3.04E-04
30GO:0003924: GTPase activity4.26E-04
31GO:0004337: geranyltranstransferase activity4.57E-04
32GO:0005200: structural constituent of cytoskeleton5.53E-04
33GO:0008047: enzyme activator activity6.31E-04
34GO:0051082: unfolded protein binding6.58E-04
35GO:0004817: cysteine-tRNA ligase activity6.66E-04
36GO:0000774: adenyl-nucleotide exchange factor activity6.66E-04
37GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity6.66E-04
38GO:0004161: dimethylallyltranstransferase activity7.28E-04
39GO:0008266: poly(U) RNA binding1.06E-03
40GO:0070330: aromatase activity1.08E-03
41GO:0005504: fatty acid binding1.08E-03
42GO:0017150: tRNA dihydrouridine synthase activity1.08E-03
43GO:0002161: aminoacyl-tRNA editing activity1.08E-03
44GO:0004148: dihydrolipoyl dehydrogenase activity1.08E-03
45GO:0030267: glyoxylate reductase (NADP) activity1.08E-03
46GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.08E-03
47GO:0003979: UDP-glucose 6-dehydrogenase activity1.08E-03
48GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.08E-03
49GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.08E-03
50GO:0003729: mRNA binding1.31E-03
51GO:0016149: translation release factor activity, codon specific1.55E-03
52GO:0043023: ribosomal large subunit binding1.55E-03
53GO:0008097: 5S rRNA binding1.55E-03
54GO:0051087: chaperone binding1.60E-03
55GO:0004176: ATP-dependent peptidase activity1.76E-03
56GO:0004045: aminoacyl-tRNA hydrolase activity2.07E-03
57GO:0016987: sigma factor activity2.07E-03
58GO:0045430: chalcone isomerase activity2.07E-03
59GO:0043495: protein anchor2.07E-03
60GO:0001053: plastid sigma factor activity2.07E-03
61GO:0004845: uracil phosphoribosyltransferase activity2.07E-03
62GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.07E-03
63GO:0016773: phosphotransferase activity, alcohol group as acceptor2.65E-03
64GO:0018685: alkane 1-monooxygenase activity2.65E-03
65GO:0004040: amidase activity2.65E-03
66GO:0005507: copper ion binding2.70E-03
67GO:0004601: peroxidase activity2.92E-03
68GO:0004791: thioredoxin-disulfide reductase activity3.09E-03
69GO:0016208: AMP binding3.27E-03
70GO:0016462: pyrophosphatase activity3.27E-03
71GO:0004849: uridine kinase activity3.93E-03
72GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.93E-03
73GO:0102391: decanoate--CoA ligase activity3.93E-03
74GO:0004747: ribokinase activity3.93E-03
75GO:0003886: DNA (cytosine-5-)-methyltransferase activity3.93E-03
76GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.93E-03
77GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.04E-03
78GO:0008237: metallopeptidase activity4.56E-03
79GO:0004427: inorganic diphosphatase activity4.64E-03
80GO:0019899: enzyme binding4.64E-03
81GO:0004467: long-chain fatty acid-CoA ligase activity4.64E-03
82GO:0016831: carboxy-lyase activity4.64E-03
83GO:0008312: 7S RNA binding5.39E-03
84GO:0004033: aldo-keto reductase (NADP) activity5.39E-03
85GO:0008865: fructokinase activity5.39E-03
86GO:0008889: glycerophosphodiester phosphodiesterase activity7.01E-03
87GO:0003747: translation release factor activity7.01E-03
88GO:0030145: manganese ion binding7.74E-03
89GO:0047617: acyl-CoA hydrolase activity7.87E-03
90GO:0005384: manganese ion transmembrane transporter activity7.87E-03
91GO:0008017: microtubule binding8.07E-03
92GO:0003746: translation elongation factor activity8.49E-03
93GO:0005089: Rho guanyl-nucleotide exchange factor activity9.71E-03
94GO:0044183: protein binding involved in protein folding9.71E-03
95GO:0042802: identical protein binding1.03E-02
96GO:0000049: tRNA binding1.07E-02
97GO:0015095: magnesium ion transmembrane transporter activity1.17E-02
98GO:0000287: magnesium ion binding1.30E-02
99GO:0051287: NAD binding1.33E-02
100GO:0016887: ATPase activity1.43E-02
101GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.48E-02
102GO:0005524: ATP binding1.50E-02
103GO:0008324: cation transmembrane transporter activity1.72E-02
104GO:0045735: nutrient reservoir activity1.75E-02
105GO:0030570: pectate lyase activity2.09E-02
106GO:0022891: substrate-specific transmembrane transporter activity2.09E-02
107GO:0003727: single-stranded RNA binding2.22E-02
108GO:0008514: organic anion transmembrane transporter activity2.22E-02
109GO:0042803: protein homodimerization activity2.32E-02
110GO:0047134: protein-disulfide reductase activity2.35E-02
111GO:0008080: N-acetyltransferase activity2.62E-02
112GO:0005199: structural constituent of cell wall2.62E-02
113GO:0008565: protein transporter activity3.17E-02
114GO:0016168: chlorophyll binding4.11E-02
115GO:0008289: lipid binding4.28E-02
116GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.60E-02
117GO:0008236: serine-type peptidase activity4.60E-02
118GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.77E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0070971: endoplasmic reticulum exit site0.00E+00
4GO:0009570: chloroplast stroma5.58E-65
5GO:0009507: chloroplast1.59E-55
6GO:0009941: chloroplast envelope1.67E-38
7GO:0009579: thylakoid2.24E-21
8GO:0005840: ribosome5.70E-14
9GO:0009535: chloroplast thylakoid membrane3.74E-11
10GO:0031977: thylakoid lumen3.43E-08
11GO:0009543: chloroplast thylakoid lumen5.98E-08
12GO:0000311: plastid large ribosomal subunit1.07E-06
13GO:0009536: plastid1.67E-06
14GO:0009534: chloroplast thylakoid3.16E-06
15GO:0009505: plant-type cell wall1.19E-05
16GO:0045298: tubulin complex1.63E-05
17GO:0046658: anchored component of plasma membrane7.58E-05
18GO:0016020: membrane2.87E-04
19GO:0000428: DNA-directed RNA polymerase complex3.04E-04
20GO:0009547: plastid ribosome3.04E-04
21GO:0009295: nucleoid5.53E-04
22GO:0010319: stromule5.53E-04
23GO:0048046: apoplast5.99E-04
24GO:0080085: signal recognition particle, chloroplast targeting6.66E-04
25GO:0005874: microtubule8.59E-04
26GO:0000312: plastid small ribosomal subunit1.06E-03
27GO:0005875: microtubule associated complex1.31E-03
28GO:0009654: photosystem II oxygen evolving complex1.60E-03
29GO:0042651: thylakoid membrane1.60E-03
30GO:0009532: plastid stroma1.76E-03
31GO:0072686: mitotic spindle2.65E-03
32GO:0031225: anchored component of membrane3.23E-03
33GO:0000793: condensed chromosome3.27E-03
34GO:0019898: extrinsic component of membrane3.31E-03
35GO:0009706: chloroplast inner membrane3.79E-03
36GO:0005762: mitochondrial large ribosomal subunit3.93E-03
37GO:0031969: chloroplast membrane4.06E-03
38GO:0022626: cytosolic ribosome4.57E-03
39GO:0000794: condensed nuclear chromosome4.64E-03
40GO:0009533: chloroplast stromal thylakoid4.64E-03
41GO:0005623: cell5.22E-03
42GO:0005618: cell wall5.27E-03
43GO:0012507: ER to Golgi transport vesicle membrane5.39E-03
44GO:0009539: photosystem II reaction center6.18E-03
45GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.18E-03
46GO:0005759: mitochondrial matrix6.75E-03
47GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.01E-03
48GO:0000922: spindle pole7.01E-03
49GO:0005763: mitochondrial small ribosomal subunit7.01E-03
50GO:0015934: large ribosomal subunit7.74E-03
51GO:0055028: cortical microtubule8.77E-03
52GO:0031012: extracellular matrix1.17E-02
53GO:0009508: plastid chromosome1.17E-02
54GO:0009574: preprophase band1.17E-02
55GO:0030095: chloroplast photosystem II1.27E-02
56GO:0022625: cytosolic large ribosomal subunit1.86E-02
57GO:0005871: kinesin complex2.35E-02
58GO:0009504: cell plate2.90E-02
59GO:0009523: photosystem II2.90E-02
60GO:0005739: mitochondrion3.14E-02
61GO:0005778: peroxisomal membrane3.64E-02
62GO:0030529: intracellular ribonucleoprotein complex3.95E-02
63GO:0005622: intracellular4.06E-02
64GO:0009707: chloroplast outer membrane4.77E-02
65GO:0022627: cytosolic small ribosomal subunit4.81E-02
Gene type



Gene DE type