co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042820: vitamin B6 catabolic process	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0042821: pyridoxal biosynthetic process	0.00E+00
4	GO:2001294: malonyl-CoA catabolic process	0.00E+00
5	GO:0015979: photosynthesis	1.27E-06
6	GO:0006400: tRNA modification	6.71E-06
7	GO:0009773: photosynthetic electron transport in photosystem I	2.68E-05
8	GO:0009443: pyridoxal 5'-phosphate salvage	3.12E-05
9	GO:0043686: co-translational protein modification	3.12E-05
10	GO:0051775: response to redox state	3.12E-05
11	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.88E-05
12	GO:0071492: cellular response to UV-A	1.37E-04
13	GO:0006000: fructose metabolic process	1.37E-04
14	GO:0006753: nucleoside phosphate metabolic process	1.37E-04
15	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.04E-04
16	GO:0006107: oxaloacetate metabolic process	2.04E-04
17	GO:0010027: thylakoid membrane organization	2.54E-04
18	GO:0009658: chloroplast organization	2.66E-04
19	GO:0006734: NADH metabolic process	2.76E-04
20	GO:0071486: cellular response to high light intensity	2.76E-04
21	GO:0080110: sporopollenin biosynthetic process	3.53E-04
22	GO:0031365: N-terminal protein amino acid modification	3.53E-04
23	GO:0009644: response to high light intensity	5.80E-04
24	GO:0015937: coenzyme A biosynthetic process	6.07E-04
25	GO:0010196: nonphotochemical quenching	6.07E-04
26	GO:0006002: fructose 6-phosphate metabolic process	7.94E-04
27	GO:0006810: transport	8.20E-04
28	GO:0009073: aromatic amino acid family biosynthetic process	1.20E-03
29	GO:0006108: malate metabolic process	1.43E-03
30	GO:0006094: gluconeogenesis	1.43E-03
31	GO:0005986: sucrose biosynthetic process	1.43E-03
32	GO:0019253: reductive pentose-phosphate cycle	1.55E-03
33	GO:0055085: transmembrane transport	1.57E-03
34	GO:0005985: sucrose metabolic process	1.67E-03
35	GO:0009695: jasmonic acid biosynthetic process	2.05E-03
36	GO:0031408: oxylipin biosynthetic process	2.19E-03
37	GO:0010584: pollen exine formation	2.61E-03
38	GO:0019761: glucosinolate biosynthetic process	3.68E-03
39	GO:0032259: methylation	4.50E-03
40	GO:0018298: protein-chromophore linkage	5.42E-03
41	GO:0006099: tricarboxylic acid cycle	6.58E-03
42	GO:0009735: response to cytokinin	7.61E-03
43	GO:0009611: response to wounding	8.51E-03
44	GO:0055114: oxidation-reduction process	9.15E-03
45	GO:0042744: hydrogen peroxide catabolic process	1.54E-02
46	GO:0006979: response to oxidative stress	1.71E-02
47	GO:0007623: circadian rhythm	1.77E-02
48	GO:0008380: RNA splicing	2.00E-02
49	GO:0080167: response to karrikin	2.81E-02
50	GO:0006397: mRNA processing	3.82E-02
51	GO:0008152: metabolic process	3.97E-02

Rank	GO Term	Adjusted P value
1	GO:0051738: xanthophyll binding	0.00E+00
2	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
3	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
4	GO:0022891: substrate-specific transmembrane transporter activity	1.34E-06
5	GO:0016168: chlorophyll binding	7.30E-06
6	GO:0010945: CoA pyrophosphatase activity	3.12E-05
7	GO:0004321: fatty-acyl-CoA synthase activity	3.12E-05
8	GO:0008746: NAD(P)+ transhydrogenase activity	3.12E-05
9	GO:0042586: peptide deformylase activity	3.12E-05
10	GO:0018708: thiol S-methyltransferase activity	7.88E-05
11	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.88E-05
12	GO:0008967: phosphoglycolate phosphatase activity	7.88E-05
13	GO:0070402: NADPH binding	1.37E-04
14	GO:0048038: quinone binding	1.72E-04
15	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	2.04E-04
16	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.76E-04
17	GO:0004045: aminoacyl-tRNA hydrolase activity	2.76E-04
18	GO:0000210: NAD+ diphosphatase activity	4.34E-04
19	GO:0016615: malate dehydrogenase activity	4.34E-04
20	GO:0030060: L-malate dehydrogenase activity	5.20E-04
21	GO:0004033: aldo-keto reductase (NADP) activity	6.99E-04
22	GO:0016207: 4-coumarate-CoA ligase activity	8.92E-04
23	GO:0043424: protein histidine kinase binding	2.05E-03
24	GO:0004176: ATP-dependent peptidase activity	2.19E-03
25	GO:0008168: methyltransferase activity	2.49E-03
26	GO:0050662: coenzyme binding	3.20E-03
27	GO:0016491: oxidoreductase activity	4.02E-03
28	GO:0046872: metal ion binding	4.26E-03
29	GO:0051213: dioxygenase activity	4.52E-03
30	GO:0009055: electron carrier activity	5.04E-03
31	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	6.38E-03
32	GO:0051539: 4 iron, 4 sulfur cluster binding	6.98E-03
33	GO:0016787: hydrolase activity	7.44E-03
34	GO:0016874: ligase activity	1.15E-02
35	GO:0005507: copper ion binding	1.19E-02
36	GO:0004601: peroxidase activity	2.41E-02
37	GO:0008233: peptidase activity	2.77E-02
38	GO:0004519: endonuclease activity	3.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0009507: chloroplast	3.38E-17
3	GO:0009535: chloroplast thylakoid membrane	1.81E-11
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.03E-08
5	GO:0009570: chloroplast stroma	7.63E-08
6	GO:0009523: photosystem II	3.08E-06
7	GO:0009579: thylakoid	1.61E-05
8	GO:0009534: chloroplast thylakoid	2.00E-04
9	GO:0009517: PSII associated light-harvesting complex II	2.76E-04
10	GO:0009941: chloroplast envelope	1.06E-03
11	GO:0005778: peroxisomal membrane	4.17E-03
12	GO:0010319: stromule	4.17E-03
13	GO:0030529: intracellular ribonucleoprotein complex	4.52E-03
14	GO:0009706: chloroplast inner membrane	1.20E-02
15	GO:0048046: apoplast	1.46E-02
16	GO:0046658: anchored component of plasma membrane	2.16E-02
17	GO:0031969: chloroplast membrane	2.81E-02