Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G62670

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0005996: monosaccharide metabolic process0.00E+00
2GO:0007638: mechanosensory behavior0.00E+00
3GO:0090393: sepal giant cell development0.00E+00
4GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
5GO:0015822: ornithine transport0.00E+00
6GO:0007155: cell adhesion4.26E-06
7GO:2000122: negative regulation of stomatal complex development3.85E-05
8GO:0006546: glycine catabolic process3.85E-05
9GO:0010037: response to carbon dioxide3.85E-05
10GO:0015976: carbon utilization3.85E-05
11GO:0010442: guard cell morphogenesis2.34E-04
12GO:0071370: cellular response to gibberellin stimulus2.34E-04
13GO:0006659: phosphatidylserine biosynthetic process2.34E-04
14GO:0000066: mitochondrial ornithine transport2.34E-04
15GO:0019510: S-adenosylhomocysteine catabolic process2.34E-04
16GO:0010583: response to cyclopentenone2.65E-04
17GO:0007267: cell-cell signaling3.40E-04
18GO:0006810: transport5.01E-04
19GO:0009773: photosynthetic electron transport in photosystem I5.04E-04
20GO:0018119: peptidyl-cysteine S-nitrosylation5.04E-04
21GO:0006695: cholesterol biosynthetic process5.20E-04
22GO:1903338: regulation of cell wall organization or biogenesis5.20E-04
23GO:0033353: S-adenosylmethionine cycle5.20E-04
24GO:0015786: UDP-glucose transport5.20E-04
25GO:0060919: auxin influx5.20E-04
26GO:0030388: fructose 1,6-bisphosphate metabolic process5.20E-04
27GO:2000123: positive regulation of stomatal complex development5.20E-04
28GO:0052541: plant-type cell wall cellulose metabolic process5.20E-04
29GO:0019253: reductive pentose-phosphate cycle7.36E-04
30GO:0016051: carbohydrate biosynthetic process7.52E-04
31GO:0006000: fructose metabolic process8.44E-04
32GO:0006696: ergosterol biosynthetic process8.44E-04
33GO:0015783: GDP-fucose transport8.44E-04
34GO:0045490: pectin catabolic process8.47E-04
35GO:0009833: plant-type primary cell wall biogenesis9.13E-04
36GO:0006833: water transport9.13E-04
37GO:0072334: UDP-galactose transmembrane transport1.20E-03
38GO:0051016: barbed-end actin filament capping1.20E-03
39GO:0006168: adenine salvage1.20E-03
40GO:0032877: positive regulation of DNA endoreduplication1.20E-03
41GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.20E-03
42GO:0006166: purine ribonucleoside salvage1.20E-03
43GO:0007231: osmosensory signaling pathway1.20E-03
44GO:0080092: regulation of pollen tube growth1.33E-03
45GO:0019722: calcium-mediated signaling1.57E-03
46GO:0045727: positive regulation of translation1.61E-03
47GO:0033500: carbohydrate homeostasis1.61E-03
48GO:0031122: cytoplasmic microtubule organization1.61E-03
49GO:2000038: regulation of stomatal complex development1.61E-03
50GO:0006021: inositol biosynthetic process1.61E-03
51GO:0006542: glutamine biosynthetic process1.61E-03
52GO:0019676: ammonia assimilation cycle1.61E-03
53GO:0019464: glycine decarboxylation via glycine cleavage system1.61E-03
54GO:0009765: photosynthesis, light harvesting1.61E-03
55GO:0006085: acetyl-CoA biosynthetic process1.61E-03
56GO:0016117: carotenoid biosynthetic process1.70E-03
57GO:0000271: polysaccharide biosynthetic process1.83E-03
58GO:0034220: ion transmembrane transport1.83E-03
59GO:0045489: pectin biosynthetic process1.97E-03
60GO:0010375: stomatal complex patterning2.05E-03
61GO:0016120: carotene biosynthetic process2.05E-03
62GO:0016123: xanthophyll biosynthetic process2.05E-03
63GO:0044209: AMP salvage2.05E-03
64GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.39E-03
65GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.52E-03
66GO:0042742: defense response to bacterium2.53E-03
67GO:0045454: cell redox homeostasis2.98E-03
68GO:0009094: L-phenylalanine biosynthetic process3.03E-03
69GO:0045926: negative regulation of growth3.03E-03
70GO:0017148: negative regulation of translation3.03E-03
71GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.03E-03
72GO:0045010: actin nucleation4.15E-03
73GO:0052543: callose deposition in cell wall4.15E-03
74GO:0009817: defense response to fungus, incompatible interaction4.57E-03
75GO:0007623: circadian rhythm4.68E-03
76GO:0032544: plastid translation4.74E-03
77GO:0006002: fructose 6-phosphate metabolic process4.74E-03
78GO:0022900: electron transport chain4.74E-03
79GO:0010119: regulation of stomatal movement5.28E-03
80GO:0045337: farnesyl diphosphate biosynthetic process5.37E-03
81GO:0033384: geranyl diphosphate biosynthetic process5.37E-03
82GO:0048589: developmental growth5.37E-03
83GO:0007166: cell surface receptor signaling pathway5.55E-03
84GO:0006839: mitochondrial transport6.60E-03
85GO:0019538: protein metabolic process6.71E-03
86GO:0009870: defense response signaling pathway, resistance gene-dependent6.71E-03
87GO:0043069: negative regulation of programmed cell death6.71E-03
88GO:0048829: root cap development6.71E-03
89GO:0010192: mucilage biosynthetic process6.71E-03
90GO:0006631: fatty acid metabolic process6.88E-03
91GO:0006816: calcium ion transport7.43E-03
92GO:0000272: polysaccharide catabolic process7.43E-03
93GO:0009744: response to sucrose7.46E-03
94GO:0006790: sulfur compound metabolic process8.17E-03
95GO:0030036: actin cytoskeleton organization8.93E-03
96GO:0050826: response to freezing8.93E-03
97GO:0009725: response to hormone8.93E-03
98GO:0006094: gluconeogenesis8.93E-03
99GO:0009767: photosynthetic electron transport chain8.93E-03
100GO:0005986: sucrose biosynthetic process8.93E-03
101GO:0010020: chloroplast fission9.72E-03
102GO:0048768: root hair cell tip growth9.72E-03
103GO:0010167: response to nitrate1.05E-02
104GO:0005985: sucrose metabolic process1.05E-02
105GO:0070588: calcium ion transmembrane transport1.05E-02
106GO:0046854: phosphatidylinositol phosphorylation1.05E-02
107GO:0009969: xyloglucan biosynthetic process1.05E-02
108GO:0080167: response to karrikin1.07E-02
109GO:0006636: unsaturated fatty acid biosynthetic process1.14E-02
110GO:0006071: glycerol metabolic process1.14E-02
111GO:0007010: cytoskeleton organization1.22E-02
112GO:0010026: trichome differentiation1.31E-02
113GO:0007017: microtubule-based process1.31E-02
114GO:0055085: transmembrane transport1.40E-02
115GO:0003333: amino acid transmembrane transport1.40E-02
116GO:0042545: cell wall modification1.40E-02
117GO:0009409: response to cold1.46E-02
118GO:0006730: one-carbon metabolic process1.50E-02
119GO:0009294: DNA mediated transformation1.59E-02
120GO:0006629: lipid metabolic process1.76E-02
121GO:0005975: carbohydrate metabolic process1.78E-02
122GO:0046686: response to cadmium ion1.86E-02
123GO:0080022: primary root development1.89E-02
124GO:0042631: cellular response to water deprivation1.89E-02
125GO:0009741: response to brassinosteroid1.99E-02
126GO:0055114: oxidation-reduction process2.18E-02
127GO:0009791: post-embryonic development2.20E-02
128GO:0019252: starch biosynthetic process2.20E-02
129GO:0008654: phospholipid biosynthetic process2.20E-02
130GO:0006633: fatty acid biosynthetic process2.27E-02
131GO:0071554: cell wall organization or biogenesis2.31E-02
132GO:0007264: small GTPase mediated signal transduction2.42E-02
133GO:1901657: glycosyl compound metabolic process2.54E-02
134GO:0071555: cell wall organization2.81E-02
135GO:0009617: response to bacterium2.97E-02
136GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.13E-02
137GO:0009735: response to cytokinin3.23E-02
138GO:0042128: nitrate assimilation3.25E-02
139GO:0016049: cell growth3.50E-02
140GO:0030244: cellulose biosynthetic process3.63E-02
141GO:0018298: protein-chromophore linkage3.63E-02
142GO:0010311: lateral root formation3.76E-02
143GO:0009832: plant-type cell wall biogenesis3.76E-02
144GO:0048767: root hair elongation3.76E-02
145GO:0009658: chloroplast organization3.85E-02
146GO:0007568: aging4.03E-02
147GO:0006865: amino acid transport4.16E-02
148GO:0007049: cell cycle4.29E-02
149GO:0009853: photorespiration4.30E-02
RankGO TermAdjusted P value
1GO:0045435: lycopene epsilon cyclase activity0.00E+00
2GO:0004760: serine-pyruvate transaminase activity0.00E+00
3GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0046905: phytoene synthase activity0.00E+00
6GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
7GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
8GO:0050281: serine-glyoxylate transaminase activity0.00E+00
9GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
10GO:0051920: peroxiredoxin activity1.72E-06
11GO:0016209: antioxidant activity4.26E-06
12GO:0080132: fatty acid alpha-hydroxylase activity2.34E-04
13GO:0008568: microtubule-severing ATPase activity2.34E-04
14GO:0051996: squalene synthase activity2.34E-04
15GO:0010313: phytochrome binding2.34E-04
16GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.34E-04
17GO:0004013: adenosylhomocysteinase activity2.34E-04
18GO:0005089: Rho guanyl-nucleotide exchange factor activity5.04E-04
19GO:0000064: L-ornithine transmembrane transporter activity5.20E-04
20GO:0004512: inositol-3-phosphate synthase activity5.20E-04
21GO:0008967: phosphoglycolate phosphatase activity5.20E-04
22GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.20E-04
23GO:0042389: omega-3 fatty acid desaturase activity5.20E-04
24GO:0004618: phosphoglycerate kinase activity5.20E-04
25GO:0010297: heteropolysaccharide binding5.20E-04
26GO:0004047: aminomethyltransferase activity5.20E-04
27GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.20E-04
28GO:0004089: carbonate dehydratase activity6.54E-04
29GO:0070330: aromatase activity8.44E-04
30GO:0003913: DNA photolyase activity8.44E-04
31GO:0004148: dihydrolipoyl dehydrogenase activity8.44E-04
32GO:0005457: GDP-fucose transmembrane transporter activity8.44E-04
33GO:0048027: mRNA 5'-UTR binding1.20E-03
34GO:0003999: adenine phosphoribosyltransferase activity1.20E-03
35GO:0005460: UDP-glucose transmembrane transporter activity1.20E-03
36GO:0001872: (1->3)-beta-D-glucan binding1.20E-03
37GO:0003878: ATP citrate synthase activity1.20E-03
38GO:0004375: glycine dehydrogenase (decarboxylating) activity1.20E-03
39GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.33E-03
40GO:0030570: pectate lyase activity1.44E-03
41GO:0010328: auxin influx transmembrane transporter activity1.61E-03
42GO:0004659: prenyltransferase activity1.61E-03
43GO:0047769: arogenate dehydratase activity1.61E-03
44GO:0004664: prephenate dehydratase activity1.61E-03
45GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.61E-03
46GO:0008453: alanine-glyoxylate transaminase activity1.61E-03
47GO:0018685: alkane 1-monooxygenase activity2.05E-03
48GO:0004356: glutamate-ammonia ligase activity2.05E-03
49GO:0005459: UDP-galactose transmembrane transporter activity2.05E-03
50GO:0030599: pectinesterase activity2.17E-03
51GO:0019901: protein kinase binding2.27E-03
52GO:0000210: NAD+ diphosphatase activity2.52E-03
53GO:0042578: phosphoric ester hydrolase activity2.52E-03
54GO:0080030: methyl indole-3-acetate esterase activity2.52E-03
55GO:0016758: transferase activity, transferring hexosyl groups3.00E-03
56GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.03E-03
57GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.03E-03
58GO:0051753: mannan synthase activity3.03E-03
59GO:0003824: catalytic activity3.04E-03
60GO:0016722: oxidoreductase activity, oxidizing metal ions3.12E-03
61GO:0005200: structural constituent of cytoskeleton3.12E-03
62GO:0016597: amino acid binding3.31E-03
63GO:0015250: water channel activity3.51E-03
64GO:0009881: photoreceptor activity3.58E-03
65GO:0004564: beta-fructofuranosidase activity4.15E-03
66GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.28E-03
67GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.74E-03
68GO:0008889: glycerophosphodiester phosphodiesterase activity5.37E-03
69GO:0004337: geranyltranstransferase activity5.37E-03
70GO:0004672: protein kinase activity5.39E-03
71GO:0004575: sucrose alpha-glucosidase activity6.03E-03
72GO:0004860: protein kinase inhibitor activity7.43E-03
73GO:0004161: dimethylallyltranstransferase activity7.43E-03
74GO:0047372: acylglycerol lipase activity7.43E-03
75GO:0051537: 2 iron, 2 sulfur cluster binding8.08E-03
76GO:0004601: peroxidase activity8.16E-03
77GO:0008378: galactosyltransferase activity8.17E-03
78GO:0004565: beta-galactosidase activity8.93E-03
79GO:0005262: calcium channel activity8.93E-03
80GO:0045330: aspartyl esterase activity1.12E-02
81GO:0016787: hydrolase activity1.13E-02
82GO:0004857: enzyme inhibitor activity1.22E-02
83GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.49E-02
84GO:0016760: cellulose synthase (UDP-forming) activity1.59E-02
85GO:0003924: GTPase activity1.76E-02
86GO:0019843: rRNA binding1.80E-02
87GO:0050662: coenzyme binding2.10E-02
88GO:0004872: receptor activity2.20E-02
89GO:0048038: quinone binding2.31E-02
90GO:0004518: nuclease activity2.42E-02
91GO:0051015: actin filament binding2.54E-02
92GO:0016759: cellulose synthase activity2.65E-02
93GO:0016757: transferase activity, transferring glycosyl groups2.71E-02
94GO:0008483: transaminase activity2.77E-02
95GO:0016413: O-acetyltransferase activity2.89E-02
96GO:0102483: scopolin beta-glucosidase activity3.38E-02
97GO:0030247: polysaccharide binding3.38E-02
98GO:0046872: metal ion binding3.64E-02
99GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.89E-02
100GO:0016788: hydrolase activity, acting on ester bonds3.92E-02
101GO:0050897: cobalt ion binding4.03E-02
102GO:0008422: beta-glucosidase activity4.57E-02
103GO:0051539: 4 iron, 4 sulfur cluster binding4.71E-02
RankGO TermAdjusted P value
1GO:0048046: apoplast6.58E-10
2GO:0009570: chloroplast stroma5.63E-08
3GO:0009507: chloroplast1.10E-07
4GO:0009941: chloroplast envelope1.29E-06
5GO:0009505: plant-type cell wall2.02E-06
6GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.65E-06
7GO:0010319: stromule2.28E-05
8GO:0009535: chloroplast thylakoid membrane2.69E-05
9GO:0009579: thylakoid3.79E-05
10GO:0031225: anchored component of membrane8.66E-05
11GO:0009534: chloroplast thylakoid2.18E-04
12GO:0046658: anchored component of plasma membrane2.31E-04
13GO:0009344: nitrite reductase complex [NAD(P)H]2.34E-04
14GO:0005886: plasma membrane4.26E-04
15GO:0009543: chloroplast thylakoid lumen5.19E-04
16GO:0042170: plastid membrane5.20E-04
17GO:0000427: plastid-encoded plastid RNA polymerase complex5.20E-04
18GO:0016020: membrane6.84E-04
19GO:0005618: cell wall6.96E-04
20GO:0005794: Golgi apparatus8.22E-04
21GO:0005576: extracellular region1.08E-03
22GO:0009654: photosystem II oxygen evolving complex1.11E-03
23GO:0009346: citrate lyase complex1.20E-03
24GO:0005960: glycine cleavage complex1.20E-03
25GO:0005775: vacuolar lumen1.20E-03
26GO:0000139: Golgi membrane1.39E-03
27GO:0010287: plastoglobule2.90E-03
28GO:0009533: chloroplast stromal thylakoid3.58E-03
29GO:0009506: plasmodesma3.63E-03
30GO:0009539: photosystem II reaction center4.74E-03
31GO:0045298: tubulin complex5.37E-03
32GO:0016324: apical plasma membrane6.71E-03
33GO:0031977: thylakoid lumen6.88E-03
34GO:0030095: chloroplast photosystem II9.72E-03
35GO:0005874: microtubule1.03E-02
36GO:0005875: microtubule associated complex1.14E-02
37GO:0042651: thylakoid membrane1.31E-02
38GO:0009532: plastid stroma1.40E-02
39GO:0019898: extrinsic component of membrane2.20E-02
40GO:0005887: integral component of plasma membrane2.58E-02
41GO:0005773: vacuole2.60E-02
42GO:0000325: plant-type vacuole4.03E-02
43GO:0031969: chloroplast membrane4.76E-02
44GO:0031902: late endosome membrane4.85E-02
Gene type



Gene DE type