co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G62630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
2	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0046677: response to antibiotic	0.00E+00
5	GO:0006580: ethanolamine metabolic process	0.00E+00
6	GO:0015717: triose phosphate transport	0.00E+00
7	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
8	GO:0015979: photosynthesis	6.57E-22
9	GO:0009768: photosynthesis, light harvesting in photosystem I	7.68E-19
10	GO:0018298: protein-chromophore linkage	1.63E-13
11	GO:0010114: response to red light	9.71E-11
12	GO:0015995: chlorophyll biosynthetic process	5.25E-08
13	GO:0010218: response to far red light	9.19E-08
14	GO:0009637: response to blue light	1.35E-07
15	GO:0009769: photosynthesis, light harvesting in photosystem II	2.71E-07
16	GO:0009645: response to low light intensity stimulus	2.71E-07
17	GO:0009644: response to high light intensity	1.14E-05
18	GO:0010196: nonphotochemical quenching	3.77E-05
19	GO:0006949: syncytium formation	1.13E-04
20	GO:0010119: regulation of stomatal movement	1.18E-04
21	GO:0019684: photosynthesis, light reaction	1.33E-04
22	GO:0018107: peptidyl-threonine phosphorylation	1.77E-04
23	GO:0009640: photomorphogenesis	1.93E-04
24	GO:0010207: photosystem II assembly	2.02E-04
25	GO:0009826: unidimensional cell growth	2.03E-04
26	GO:0035304: regulation of protein dephosphorylation	2.16E-04
27	GO:0019752: carboxylic acid metabolic process	2.16E-04
28	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.16E-04
29	GO:0009269: response to desiccation	3.47E-04
30	GO:1902448: positive regulation of shade avoidance	3.61E-04
31	GO:0035436: triose phosphate transmembrane transport	3.61E-04
32	GO:0044211: CTP salvage	5.20E-04
33	GO:0009741: response to brassinosteroid	5.66E-04
34	GO:0009765: photosynthesis, light harvesting	6.90E-04
35	GO:2000306: positive regulation of photomorphogenesis	6.90E-04
36	GO:0030007: cellular potassium ion homeostasis	6.90E-04
37	GO:0015713: phosphoglycerate transport	6.90E-04
38	GO:0044206: UMP salvage	6.90E-04
39	GO:0030104: water homeostasis	6.90E-04
40	GO:0009828: plant-type cell wall loosening	8.34E-04
41	GO:0043097: pyrimidine nucleoside salvage	8.73E-04
42	GO:0042549: photosystem II stabilization	1.07E-03
43	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.07E-03
44	GO:0045962: positive regulation of development, heterochronic	1.07E-03
45	GO:0006206: pyrimidine nucleobase metabolic process	1.07E-03
46	GO:0009635: response to herbicide	1.07E-03
47	GO:0009643: photosynthetic acclimation	1.07E-03
48	GO:0009735: response to cytokinin	1.17E-03
49	GO:0010189: vitamin E biosynthetic process	1.27E-03
50	GO:1900056: negative regulation of leaf senescence	1.49E-03
51	GO:0050829: defense response to Gram-negative bacterium	1.49E-03
52	GO:0051510: regulation of unidimensional cell growth	1.49E-03
53	GO:0009642: response to light intensity	1.72E-03
54	GO:0055114: oxidation-reduction process	1.86E-03
55	GO:0009723: response to ethylene	1.87E-03
56	GO:0009657: plastid organization	1.96E-03
57	GO:0010206: photosystem II repair	2.21E-03
58	GO:0034765: regulation of ion transmembrane transport	2.21E-03
59	GO:0090333: regulation of stomatal closure	2.21E-03
60	GO:0010205: photoinhibition	2.48E-03
61	GO:0006779: porphyrin-containing compound biosynthetic process	2.48E-03
62	GO:0010380: regulation of chlorophyll biosynthetic process	2.48E-03
63	GO:0009664: plant-type cell wall organization	2.56E-03
64	GO:0006782: protoporphyrinogen IX biosynthetic process	2.75E-03
65	GO:0030148: sphingolipid biosynthetic process	3.03E-03
66	GO:0046856: phosphatidylinositol dephosphorylation	3.03E-03
67	GO:0043085: positive regulation of catalytic activity	3.03E-03
68	GO:0018119: peptidyl-cysteine S-nitrosylation	3.03E-03
69	GO:0043086: negative regulation of catalytic activity	3.24E-03
70	GO:0009767: photosynthetic electron transport chain	3.63E-03
71	GO:0018105: peptidyl-serine phosphorylation	4.00E-03
72	GO:0009742: brassinosteroid mediated signaling pathway	4.12E-03
73	GO:0090351: seedling development	4.26E-03
74	GO:0006289: nucleotide-excision repair	4.92E-03
75	GO:0051260: protein homooligomerization	5.62E-03
76	GO:0009409: response to cold	6.15E-03
77	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	6.35E-03
78	GO:0071215: cellular response to abscisic acid stimulus	6.35E-03
79	GO:0009416: response to light stimulus	6.89E-03
80	GO:0070417: cellular response to cold	7.11E-03
81	GO:0006520: cellular amino acid metabolic process	7.91E-03
82	GO:0006662: glycerol ether metabolic process	7.91E-03
83	GO:0009791: post-embryonic development	8.74E-03
84	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	9.16E-03
85	GO:0010193: response to ozone	9.16E-03
86	GO:0009658: chloroplast organization	1.04E-02
87	GO:0071805: potassium ion transmembrane transport	1.09E-02
88	GO:0010029: regulation of seed germination	1.23E-02
89	GO:0080167: response to karrikin	1.29E-02
90	GO:0048573: photoperiodism, flowering	1.33E-02
91	GO:0016311: dephosphorylation	1.38E-02
92	GO:0045454: cell redox homeostasis	1.54E-02
93	GO:0007568: aging	1.59E-02
94	GO:0009910: negative regulation of flower development	1.59E-02
95	GO:0034599: cellular response to oxidative stress	1.75E-02
96	GO:0006629: lipid metabolic process	1.91E-02
97	GO:0009965: leaf morphogenesis	2.20E-02
98	GO:0006812: cation transport	2.38E-02
99	GO:0009651: response to salt stress	2.41E-02
100	GO:0010224: response to UV-B	2.57E-02
101	GO:0006417: regulation of translation	2.70E-02
102	GO:0009740: gibberellic acid mediated signaling pathway	3.09E-02
103	GO:0042545: cell wall modification	3.16E-02
104	GO:0006396: RNA processing	3.29E-02
105	GO:0035556: intracellular signal transduction	3.57E-02
106	GO:0009058: biosynthetic process	3.93E-02
107	GO:0009737: response to abscisic acid	4.33E-02
108	GO:0040008: regulation of growth	4.60E-02
109	GO:0045490: pectin catabolic process	4.75E-02
110	GO:0007623: circadian rhythm	4.75E-02
111	GO:0010228: vegetative to reproductive phase transition of meristem	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
2	GO:0015269: calcium-activated potassium channel activity	0.00E+00
3	GO:0045550: geranylgeranyl reductase activity	0.00E+00
4	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
5	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
6	GO:0031409: pigment binding	7.32E-17
7	GO:0016168: chlorophyll binding	6.38E-14
8	GO:0004462: lactoylglutathione lyase activity	1.95E-05
9	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	9.14E-05
10	GO:0010242: oxygen evolving activity	9.14E-05
11	GO:0052631: sphingolipid delta-8 desaturase activity	9.14E-05
12	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	9.14E-05
13	GO:0046872: metal ion binding	1.71E-04
14	GO:0008266: poly(U) RNA binding	2.02E-04
15	GO:0016630: protochlorophyllide reductase activity	2.16E-04
16	GO:0019172: glyoxalase III activity	2.16E-04
17	GO:0071917: triose-phosphate transmembrane transporter activity	3.61E-04
18	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.61E-04
19	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	5.20E-04
20	GO:0015120: phosphoglycerate transmembrane transporter activity	6.90E-04
21	GO:0004845: uracil phosphoribosyltransferase activity	6.90E-04
22	GO:0070628: proteasome binding	6.90E-04
23	GO:0046910: pectinesterase inhibitor activity	8.31E-04
24	GO:0051538: 3 iron, 4 sulfur cluster binding	8.73E-04
25	GO:0015271: outward rectifier potassium channel activity	1.07E-03
26	GO:0031593: polyubiquitin binding	1.07E-03
27	GO:0004849: uridine kinase activity	1.27E-03
28	GO:0016831: carboxy-lyase activity	1.49E-03
29	GO:0005267: potassium channel activity	1.96E-03
30	GO:0051537: 2 iron, 2 sulfur cluster binding	2.21E-03
31	GO:0008047: enzyme activator activity	2.75E-03
32	GO:0047372: acylglycerol lipase activity	3.03E-03
33	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.32E-03
34	GO:0004022: alcohol dehydrogenase (NAD) activity	3.63E-03
35	GO:0015035: protein disulfide oxidoreductase activity	4.00E-03
36	GO:0005515: protein binding	4.09E-03
37	GO:0004190: aspartic-type endopeptidase activity	4.26E-03
38	GO:0003712: transcription cofactor activity	4.26E-03
39	GO:0043130: ubiquitin binding	4.92E-03
40	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.99E-03
41	GO:0005216: ion channel activity	5.27E-03
42	GO:0004707: MAP kinase activity	5.62E-03
43	GO:0015297: antiporter activity	6.40E-03
44	GO:0003727: single-stranded RNA binding	6.73E-03
45	GO:0047134: protein-disulfide reductase activity	7.11E-03
46	GO:0004791: thioredoxin-disulfide reductase activity	8.32E-03
47	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.00E-02
48	GO:0003684: damaged DNA binding	1.05E-02
49	GO:0005509: calcium ion binding	1.52E-02
50	GO:0005506: iron ion binding	1.65E-02
51	GO:0003993: acid phosphatase activity	1.75E-02
52	GO:0043621: protein self-association	2.14E-02
53	GO:0005198: structural molecule activity	2.20E-02
54	GO:0045330: aspartyl esterase activity	2.70E-02
55	GO:0004672: protein kinase activity	2.74E-02
56	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.89E-02
57	GO:0030599: pectinesterase activity	3.09E-02
58	GO:0016829: lyase activity	4.00E-02
59	GO:0030170: pyridoxal phosphate binding	4.07E-02
60	GO:0004674: protein serine/threonine kinase activity	4.21E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009534: chloroplast thylakoid	2.77E-37
4	GO:0009535: chloroplast thylakoid membrane	2.77E-31
5	GO:0009579: thylakoid	3.22E-23
6	GO:0009941: chloroplast envelope	1.93E-21
7	GO:0010287: plastoglobule	4.02E-20
8	GO:0009522: photosystem I	2.90E-17
9	GO:0009507: chloroplast	5.19E-14
10	GO:0030076: light-harvesting complex	2.49E-12
11	GO:0009538: photosystem I reaction center	5.42E-12
12	GO:0009523: photosystem II	9.51E-09
13	GO:0009517: PSII associated light-harvesting complex II	2.05E-08
14	GO:0030095: chloroplast photosystem II	4.36E-08
15	GO:0009543: chloroplast thylakoid lumen	9.53E-08
16	GO:0031977: thylakoid lumen	2.18E-07
17	GO:0009654: photosystem II oxygen evolving complex	9.34E-06
18	GO:0042651: thylakoid membrane	9.34E-06
19	GO:0016020: membrane	2.73E-05
20	GO:0019898: extrinsic component of membrane	3.21E-05
21	GO:0016021: integral component of membrane	4.03E-05
22	GO:0030660: Golgi-associated vesicle membrane	6.90E-04
23	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	6.90E-04
24	GO:0055035: plastid thylakoid membrane	8.73E-04
25	GO:0009533: chloroplast stromal thylakoid	1.49E-03
26	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.72E-03
27	GO:0031969: chloroplast membrane	2.04E-03
28	GO:0009570: chloroplast stroma	2.39E-03
29	GO:0005765: lysosomal membrane	3.03E-03
30	GO:0009706: chloroplast inner membrane	3.89E-03
31	GO:0071944: cell periphery	1.00E-02
32	GO:0009707: chloroplast outer membrane	1.43E-02
33	GO:0005774: vacuolar membrane	2.52E-02
34	GO:0010008: endosome membrane	2.89E-02
35	GO:0005623: cell	3.85E-02